Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 6.5e-176 621.3 507 100.0
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 1.1e-98 364.8 479 80.2
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.1e-97 360.5 478 78.2
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 2.7e-81 307.0 214 71.0
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 1.1e-77 295.0 335 72.8
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 4.5e-76 289.7 234 64.1
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 5.5e-74 282.7 213 64.8
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 2.1e-73 280.8 220 61.4
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 1.8e-72 277.7 166 76.5
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 3.1e-69 266.9 336 70.8
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 1.2e-68 265.0 224 60.7
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 2.0e-68 264.2 220 63.2
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 2.6e-68 263.8 204 62.3
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 4.5e-68 263.1 206 61.7
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 5.9e-68 262.7 166 72.9
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 7.7e-68 262.3 322 71.4
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 3.2e-66 256.9 220 57.7
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 1.2e-65 255.0 188 62.8
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 2.7e-65 253.8 291 73.2
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 2.7e-65 253.8 214 59.8
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 2.7e-65 253.8 418 48.3
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 6.1e-65 252.7 226 58.4
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 6.1e-65 252.7 215 61.4
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 7.9e-65 252.3 202 63.4
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 1.0e-64 251.9 199 60.8
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 1.4e-64 251.5 208 62.0
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 1.4e-64 251.5 223 58.3
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 1.4e-64 251.5 217 59.4
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 5.1e-64 249.6 220 58.6
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 2.0e-63 247.7 209 59.8
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 7.4e-63 245.7 231 57.6
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 2.2e-62 244.2 295 72.2
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 2.8e-62 243.8 223 55.6
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 3.7e-62 243.4 223 55.6
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 6.3e-62 242.7 207 58.0
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 1.8e-61 241.1 173 64.7
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 1.8e-61 241.1 220 56.8
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 3.1e-61 240.4 322 68.3
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 2.6e-60 237.3 211 55.9
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 2.6e-60 237.3 176 61.4
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 5.9e-60 236.1 204 56.9
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 7.7e-60 235.7 229 54.6
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 1.0e-59 235.3 222 54.1
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 1.7e-59 234.6 187 61.0
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 1.1e-58 231.9 229 54.6
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 1.6e-57 228.0 305 65.9
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 2.1e-57 227.6 148 70.3
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 2.7e-57 227.3 209 53.1
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 3.6e-57 226.9 305 64.3
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 4.7e-57 226.5 202 56.4
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 4.7e-57 226.5 204 54.9
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 1.0e-56 225.3 223 52.9
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 2.3e-56 224.2 178 62.9
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 6.7e-56 222.6 207 51.7
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 6.7e-56 222.6 205 54.6
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 6.7e-56 222.6 191 56.5
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 1.1e-55 221.9 321 58.9
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 7.4e-55 219.2 221 56.1
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.3e-54 218.4 475 38.9
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 1.3e-54 218.4 170 58.2
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 1.7e-54 218.0 225 52.0
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 2.2e-54 217.6 316 63.6
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 3.7e-54 216.9 206 51.0
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 4.8e-54 216.5 207 54.1
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 6.3e-54 216.1 202 54.0
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 6.3e-54 216.1 210 51.4
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 6.3e-54 216.1 210 51.4
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 1.4e-53 214.9 201 52.7
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 3.1e-53 213.8 204 54.9
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 9.1e-53 212.2 194 51.5
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 4.5e-52 209.9 195 54.4
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 7.7e-52 209.1 208 50.5
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 7.7e-52 209.1 225 49.8
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 4.2e-50 203.4 207 50.2
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 4.2e-50 203.4 207 50.2
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 9.4e-50 202.2 216 48.6
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 1.6e-49 201.4 201 49.8
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.1e-49 201.1 363 80.7
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 3.6e-49 200.3 210 49.0
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 4.7e-49 199.9 224 48.7
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 1.0e-48 198.7 225 49.8
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 6.7e-48 196.1 215 49.3
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 6.7e-48 196.1 203 49.8
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 3.7e-46 190.3 209 50.2
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 9.1e-45 185.7 182 54.9
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 1.2e-44 185.3 107 76.6
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 1.6e-44 184.9 223 45.3
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 1.0e-43 182.2 205 51.7
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 9.4e-42 175.6 176 54.0
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 1.2e-41 175.3 107 73.8
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 2.1e-41 174.5 180 49.4
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 4.7e-41 173.3 175 52.6
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 3.0e-40 170.6 200 44.5
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 3.0e-40 170.6 200 44.5
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 2.0e-39 167.9 118 62.7
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 5.7e-39 166.4 471 30.6
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 1.3e-38 165.2 203 43.3
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 6.5e-35 152.9 111 65.8
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 9.8e-31 139.0 107 59.8
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 2.4e-29 134.4 87 66.7
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 1.2e-25 122.1 107 54.2
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.6e-17 95.1 56 78.6
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 2.8e-17 94.4 471 22.7
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 1.0e-16 92.4 55 78.2
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 5.2e-16 90.1 55 76.4
Zm00001eb365120 Zea mays HOM05D006980 ORTHO05D008704 2.2e-14 84.7 215 32.1
Manes.07G071796 Manihot esculenta HOM05D006980 ORTHO05D008704 1.5e-10 72.0 45 66.7
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 5.6e-10 70.1 53 52.8
Ciclev10028524m.g Citrus clementina HOM05D007402 ORTHO05D003673 5.6e-10 70.1 142 28.9
Manes.11G141800 Manihot esculenta HOM05D007402 ORTHO05D003673 4.7e-09 67.0 144 27.8
Zm00001eb423490 Zea mays HOM05D006980 ORTHO05D008704 8.1e-09 66.2 54 50.0
Zm00001eb434620 Zea mays HOM05D006980 ORTHO05D008704 8.1e-09 66.2 54 50.0
PGR004G2397 Punica granatum HOM05D007402 ORTHO05D003673 2.6e-07 61.2 142 27.5
Lj2P1035T18 Lonicera japonica HOM05D007402 ORTHO05D003673 3.4e-07 60.8 144 27.1
Oeu029122.1 Olea europaea HOM05D006980 ORTHO05D008704 3.4e-07 60.8 52 48.1
TWI75G1283 Tripterygium wilfordii HOM05D007402 ORTHO05D003673 4.4e-07 60.5 142 28.9
CANSAT54G0200 Cannabis sativa HOM05D007402 ORTHO05D003673 9.8e-07 59.3 142 25.4
Nn7g37996 Nelumbo nucifera HOM05D007402 ORTHO05D003673 9.8e-07 59.3 142 28.2
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 1.7e-06 58.5 144 27.1
Glyma.17G099400 Glycine max HOM05D002453 ORTHO05D002107 1.7e-06 58.5 132 30.3
Potri.018G093700 Populus trichocarpa HOM05D007402 ORTHO05D003673 1.7e-06 58.5 142 26.8
BcaC01g01383 Brassica carinata HOM05D002453 ORTHO05D008746 2.2e-06 58.2 80 38.8
C03p91440 Brassica napus HOM05D002453 ORTHO05D008746 2.2e-06 58.2 80 38.8
BolC3t21463H Brassica oleracea HOM05D002753 ORTHO05D003097 2.2e-06 58.2 80 38.8
BolC4t22892H Brassica oleracea HOM05D006980 ORTHO05D008704 2.2e-06 58.2 41 58.5
BcaNung00625 Brassica carinata HOM05D002236 ORTHO05D002341 2.9e-06 57.8 74 36.5
HPP92_006001 Vanilla planifolia HOM05D006858 ORTHO05D008767 2.9e-06 57.8 59 44.1
A01p03410 Brassica napus HOM05D000001 ORTHO05D000003 3.7e-06 57.4 74 36.5
MD11G1131200 Malus domestica HOM05D007402 ORTHO05D003673 3.7e-06 57.4 142 26.1
C01p03720 Brassica napus HOM05D000001 ORTHO05D000003 4.9e-06 57.0 74 35.1
BolC1t00364H Brassica oleracea HOM05D000001 ORTHO05D000003 4.9e-06 57.0 74 35.1
Haze_23904 Corylus avellana HOM05D007402 ORTHO05D003673 4.9e-06 57.0 142 26.8
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 4.9e-06 57.0 132 28.0
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 8.3e-06 56.2 132 26.5


User provided reference genes

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