Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 6.7e-148 527.3 267 100.0
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 3.5e-120 435.3 260 85.4
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 7.7e-120 434.1 260 85.0
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 1.2e-112 410.2 259 82.2
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 1.0e-111 407.1 237 85.2
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 1.1e-110 403.7 259 79.9
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 3.6e-109 398.7 259 74.9
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 6.8e-108 394.4 261 77.4
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 1.2e-107 393.7 241 80.5
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 1.2e-107 393.7 241 80.5
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 2.6e-107 392.5 247 79.4
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.6e-107 392.5 245 82.4
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 7.5e-107 391.0 261 75.5
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 2.2e-106 389.4 236 80.1
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 3.7e-106 388.7 236 79.7
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 4.1e-105 385.2 259 76.1
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 4.1e-105 385.2 272 75.0
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.2e-104 383.6 259 75.3
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.7e-103 379.8 272 73.9
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 3.0e-103 379.0 264 73.1
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 5.0e-103 378.3 246 77.2
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 6.6e-103 377.9 264 72.7
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.5e-102 376.7 253 77.1
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 1.9e-102 376.3 249 75.9
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 3.3e-102 375.6 225 81.3
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 7.3e-102 374.4 259 73.0
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 7.3e-102 374.4 263 74.1
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 9.5e-102 374.0 222 82.0
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.2e-101 373.6 221 84.6
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.2e-101 373.6 261 73.9
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.2e-101 373.6 230 81.3
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 2.1e-101 372.9 264 71.2
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 2.1e-101 372.9 241 76.8
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 2.8e-101 372.5 242 78.5
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 3.6e-101 372.1 259 73.7
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 3.6e-101 372.1 263 72.6
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 3.6e-101 372.1 214 85.5
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 4.7e-101 371.7 241 77.2
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 4.7e-101 371.7 226 81.4
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 8.1e-101 370.9 259 72.6
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 8.1e-101 370.9 230 80.4
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 1.4e-100 370.2 249 75.9
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 1.8e-100 369.8 220 81.8
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 2.3e-100 369.4 218 82.6
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 2.3e-100 369.4 259 73.0
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 3.1e-100 369.0 264 72.3
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 3.1e-100 369.0 251 77.3
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 3.1e-100 369.0 239 76.6
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 4.0e-100 368.6 231 80.1
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 5.2e-100 368.2 218 81.7
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 6.8e-100 367.9 230 77.0
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 6.8e-100 367.9 218 82.6
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 1.2e-99 367.1 249 75.5
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 1.2e-99 367.1 259 69.9
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 2.0e-99 366.3 259 71.8
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 2.0e-99 366.3 214 81.8
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 2.6e-99 365.9 260 70.8
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 5.8e-99 364.8 221 80.1
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 5.8e-99 364.8 259 72.2
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 7.5e-99 364.4 260 72.3
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 9.8e-99 364.0 228 76.8
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 9.8e-99 364.0 255 73.3
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 9.8e-99 364.0 216 81.9
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.3e-98 363.6 260 69.2
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 1.7e-98 363.2 249 75.1
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 1.7e-98 363.2 228 79.8
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 1.7e-98 363.2 259 68.3
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 1.7e-98 363.2 230 77.8
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 2.2e-98 362.8 226 78.8
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 2.9e-98 362.5 261 72.8
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 2.9e-98 362.5 249 74.7
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 2.9e-98 362.5 237 77.6
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 3.7e-98 362.1 230 75.7
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 3.7e-98 362.1 226 78.8
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 4.9e-98 361.7 275 70.2
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 4.9e-98 361.7 224 79.0
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 6.4e-98 361.3 214 81.3
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 8.3e-98 360.9 250 74.4
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 1.4e-97 360.1 214 81.3
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 1.9e-97 359.8 259 71.0
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 2.4e-97 359.4 253 74.3
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 3.2e-97 359.0 239 74.9
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 4.1e-97 358.6 230 74.8
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 1.6e-96 356.7 214 81.8
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 1.0e-95 354.0 248 73.8
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.0e-95 354.0 224 77.2
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.3e-95 353.6 214 79.4
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.3e-95 353.6 227 75.8
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 1.7e-95 353.2 230 75.2
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 5.1e-95 351.7 221 79.6
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 8.6e-95 350.9 249 71.1
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.3e-94 348.6 266 67.7
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 7.3e-94 347.8 226 75.7
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 2.0e-91 339.7 197 83.8
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 1.7e-90 336.7 246 70.3
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 4.9e-90 335.1 221 72.4
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 7.1e-89 331.3 219 72.1
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 3.5e-88 328.9 208 76.0
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 2.3e-87 326.2 196 81.6
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 4.7e-85 318.5 227 69.2
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 4.0e-84 315.5 260 65.8
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 5.2e-84 315.1 182 83.0
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 5.2e-84 315.1 253 65.6
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 2.6e-83 312.8 204 75.5
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 4.9e-82 308.5 237 67.1
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 8.4e-82 307.8 177 81.4
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 6.0e-80 301.6 326 52.8
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 7.8e-80 301.2 227 65.6
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 8.7e-79 297.7 212 68.4
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 1.9e-78 296.6 213 68.5
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 5.3e-76 288.5 212 66.0
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.2e-75 287.3 183 75.4
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 9.9e-75 284.3 228 61.8
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.1e-73 280.8 183 74.3
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 1.1e-73 280.8 221 65.6
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 7.1e-73 278.1 211 66.8
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 6.0e-72 275.0 199 71.9
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 7.9e-72 274.6 170 82.4
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.0e-71 274.2 221 61.5
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 4.3e-70 268.9 213 66.7
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 1.4e-68 263.8 214 64.0
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 2.4e-68 263.1 211 60.7
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 8.4e-66 254.6 260 56.2
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 1.4e-65 253.8 177 73.4
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 6.9e-60 235.0 187 64.2
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 1.3e-58 230.7 127 87.4
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 5.5e-57 225.3 224 55.8
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 1.9e-54 216.9 121 86.0
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.0e-47 194.5 120 80.8
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.8e-47 193.7 115 83.5
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 4.3e-46 189.1 108 88.9
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 4.1e-44 182.6 209 46.4
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 2.2e-42 176.8 108 77.8
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 3.9e-39 166.0 91 85.7
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 3.9e-39 166.0 98 78.6
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 9.7e-38 161.4 110 73.6
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.3e-37 161.0 123 64.2
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 3.7e-37 159.5 125 56.8
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 4.8e-37 159.1 97 82.5
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 2.2e-34 150.2 157 51.6
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 3.6e-32 142.9 116 61.2
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 6.7e-31 138.7 100 68.0
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 1.1e-30 137.9 194 41.8
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 9.7e-30 134.8 94 70.2
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 4.5e-27 125.9 80 77.5
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.7e-26 124.0 67 85.1
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 6.5e-26 122.1 65 86.2
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 6.5e-26 122.1 65 86.2
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 6.5e-26 122.1 67 83.6
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 6.1e-24 115.5 70 82.9
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.0e-19 100.5 69 66.7
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 2.9e-18 96.7 197 38.6
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.1e-16 90.5 70 67.1
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.7e-16 90.1 92 48.9
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 1.8e-15 87.4 46 91.3
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 4.5e-11 72.8 63 57.1
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.8e-07 60.8 34 76.5
SEGI_21930 Sequoiadendron giganteum HOM05D004449 ORTHO05D386504 8.8e-07 58.5 79 43.0


User provided reference genes

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