Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 2.0e-55 218.8 107 100.0
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 9.2e-48 193.4 107 86.9
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.9e-45 185.7 107 79.4
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 3.3e-45 184.9 107 79.4
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 4.3e-45 184.5 107 78.5
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 9.5e-45 183.3 107 79.4
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 9.5e-45 183.3 107 82.2
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 6.8e-43 177.2 107 75.7
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 1.5e-42 176.0 108 78.7
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 2.6e-42 175.3 107 74.8
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 2.6e-42 175.3 108 75.9
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 3.4e-42 174.9 107 79.4
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 9.9e-42 173.3 107 79.4
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 2.2e-41 172.2 107 74.8
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 4.9e-41 171.0 107 74.8
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 6.4e-41 170.6 107 78.5
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 8.4e-41 170.2 107 74.8
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 1.9e-40 169.1 108 75.9
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 4.1e-40 167.9 108 73.1
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 9.2e-40 166.8 107 72.0
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.2e-39 166.4 108 75.0
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.6e-39 166.0 108 74.1
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 6.0e-39 164.1 107 72.0
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 6.0e-39 164.1 108 70.4
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 7.8e-39 163.7 108 73.1
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 7.8e-39 163.7 108 72.2
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.0e-38 163.3 108 72.2
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 1.0e-38 163.3 107 71.0
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 1.3e-38 162.9 108 73.1
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 1.3e-38 162.9 108 71.3
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 1.3e-38 162.9 104 73.1
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.7e-38 162.5 107 71.0
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.7e-38 162.5 107 71.0
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 2.3e-38 162.2 108 73.1
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 3.0e-38 161.8 108 71.3
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 3.0e-38 161.8 103 75.7
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 8.6e-38 160.2 107 70.1
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.5e-37 159.5 107 69.2
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 3.3e-37 158.3 107 66.4
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 4.3e-37 157.9 109 69.7
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 4.3e-37 157.9 108 69.4
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 7.3e-37 157.1 106 69.8
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 1.6e-36 156.0 107 66.4
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 2.1e-36 155.6 107 68.2
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 2.8e-36 155.2 107 64.5
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 3.6e-36 154.8 108 68.5
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 4.7e-36 154.5 108 65.7
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.1e-35 153.3 108 66.7
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 1.1e-35 153.3 107 66.4
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 1.4e-35 152.9 107 68.2
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 2.4e-35 152.1 108 67.6
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 2.4e-35 152.1 108 65.7
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 3.1e-35 151.8 107 63.6
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 3.1e-35 151.8 107 63.6
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 3.1e-35 151.8 107 63.6
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 3.1e-35 151.8 107 63.6
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 4.0e-35 151.4 107 66.4
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 6.9e-35 150.6 108 67.6
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 9.0e-35 150.2 107 62.6
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 9.0e-35 150.2 108 66.7
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 9.0e-35 150.2 107 66.4
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 65.7
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.2e-34 149.8 107 59.8
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 65.7
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 1.5e-34 149.4 107 60.7
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 1.5e-34 149.4 107 66.4
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 2.0e-34 149.1 107 61.7
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.6e-34 148.7 108 66.7
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.6e-34 148.7 108 66.7
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 3.4e-34 148.3 107 60.7
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 3.4e-34 148.3 107 60.7
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 3.4e-34 148.3 107 63.6
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 5.8e-34 147.5 108 67.6
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 5.8e-34 147.5 107 64.5
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 9.9e-34 146.7 107 59.8
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 9.9e-34 146.7 107 59.8
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.2e-33 145.6 107 58.9
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 2.9e-33 145.2 107 57.9
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 3.8e-33 144.8 100 71.0
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 4.9e-33 144.4 107 59.8
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 6.4e-33 144.1 107 58.9
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 6.4e-33 144.1 107 58.9
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 1.1e-32 143.3 107 63.6
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 1.1e-32 143.3 106 59.4
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.9e-32 142.5 107 59.8
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 1.9e-32 142.5 107 62.6
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.4e-32 142.1 107 59.8
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 4.2e-32 141.4 108 60.2
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 4.2e-32 141.4 107 59.8
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 9.3e-32 140.2 108 57.4
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 9.3e-32 140.2 111 62.2
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.6e-31 139.4 107 57.9
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 2.1e-31 139.0 109 57.8
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 2.1e-31 139.0 107 59.8
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 3.5e-31 138.3 108 57.4
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 3.5e-31 138.3 85 76.5
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 4.6e-31 137.9 107 60.7
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 4.6e-31 137.9 107 57.9
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 4.6e-31 137.9 84 76.2
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 4.6e-31 137.9 107 57.0
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 6.0e-31 137.5 107 59.8
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 6.0e-31 137.5 107 57.0
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 7.8e-31 137.1 108 58.3
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 7.8e-31 137.1 107 57.0
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 7.8e-31 137.1 89 73.0
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.0e-30 136.7 108 58.3
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.0e-30 136.7 85 75.3
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 1.3e-30 136.3 107 58.9
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 1.7e-30 136.0 107 57.0
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 8.7e-30 133.7 90 67.8
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 1.1e-29 133.3 108 58.3
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 1.9e-29 132.5 87 70.1
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 3.3e-29 131.7 94 67.0
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 58.3
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 5.6e-29 131.0 103 63.1
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 7.3e-29 130.6 84 72.6
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 7.3e-29 130.6 108 56.5
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 9.6e-29 130.2 98 58.2
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.6e-28 129.4 107 61.7
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 4.8e-28 127.9 95 58.9
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 1.4e-27 126.3 108 55.6
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 1.8e-27 125.9 108 55.6
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 4.0e-27 124.8 88 62.5
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 4.0e-27 124.8 108 54.6
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 1.2e-26 123.2 91 61.5
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 1.2e-26 123.2 107 51.4
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 1.5e-26 122.9 108 50.9
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 3.4e-26 121.7 107 53.3
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 9.9e-26 120.2 86 66.3
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.7e-25 119.4 86 66.3
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 3.8e-25 118.2 107 48.6
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 5.4e-24 114.4 83 61.4
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 5.4e-24 114.4 83 61.4
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 9.3e-24 113.6 84 60.7
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 1.2e-23 113.2 65 86.2
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 1.6e-23 112.8 84 69.0
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 2.1e-23 112.5 107 44.9
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 3.5e-23 111.7 87 63.2
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 6.0e-23 110.9 86 53.5
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 2.3e-22 109.0 71 62.0
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 3.0e-22 108.6 84 59.5
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 3.9e-22 108.2 84 59.5
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 5.6e-21 104.4 87 50.6
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 1.1e-19 100.1 108 43.5
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 1.8e-19 99.4 85 57.6
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 1.5e-18 96.3 109 43.1
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 1.5e-18 96.3 87 57.5
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 5.8e-18 94.4 65 75.4
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 2.2e-17 92.4 100 42.0
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 8.4e-17 90.5 82 48.8
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.9e-16 89.4 100 41.0
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 7.1e-16 87.4 60 71.7
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 1.2e-15 86.7 80 53.8
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 1.2e-15 86.7 85 52.9
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 4.3e-13 78.2 111 40.5
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 2.6e-10 68.9 109 35.8
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 5.8e-10 67.8 109 37.6
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 3.0e-06 55.5 61 41.0
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 3.0e-06 55.5 61 41.0
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 6.7e-06 54.3 41 63.4


User provided reference genes

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