Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G105900 Prunus persica HOM05D002400 ORTHO05D002568 9.5e-77 290.0 141 100.0
Prupe.7G105500 Prunus persica HOM05D002400 ORTHO05D002568 2.8e-68 261.9 139 92.1
MD14G1025600 Malus domestica HOM05D002400 ORTHO05D002568 5.7e-37 157.9 138 55.8
RcHm_v2.0_Chr3g0474031 Rosa chinensis HOM05D002400 ORTHO05D002568 1.6e-36 156.4 134 56.0
FvH4_6g19030 Fragaria vesca HOM05D002400 ORTHO05D002568 2.6e-34 149.1 134 53.0
FAN02G4410 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.5e-34 148.3 134 53.7
FAN14G2096 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.5e-34 148.3 134 53.7
RcHm_v2.0_Chr3g0474111 Rosa chinensis HOM05D002400 ORTHO05D002568 2.9e-33 145.6 135 54.8
RcHm_v2.0_Chr3g0474191 Rosa chinensis HOM05D002400 ORTHO05D002568 2.9e-33 145.6 137 54.0
MD14G1025200 Malus domestica HOM05D002400 ORTHO05D002568 5.0e-33 144.8 133 53.4
MD14G1025400 Malus domestica HOM05D002400 ORTHO05D002568 1.1e-32 143.7 136 51.5
Prupe.6G311500 Prunus persica HOM05D002400 ORTHO05D002568 5.5e-32 141.4 134 51.5
Prupe.7G105000 Prunus persica HOM05D002400 ORTHO05D002568 7.9e-31 137.5 136 52.2
MD14G1025300 Malus domestica HOM05D002400 ORTHO05D002568 1.5e-29 133.3 136 47.8
RcHm_v2.0_Chr3g0475381 Rosa chinensis HOM05D002400 ORTHO05D002568 4.3e-29 131.7 136 48.5
FAN05G4425 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.7e-29 131.3 130 51.5
RcHm_v2.0_Chr3g0474001 Rosa chinensis HOM05D002400 ORTHO05D002568 5.7e-29 131.3 130 52.3
RcHm_v2.0_Chr3g0474041 Rosa chinensis HOM05D002400 ORTHO05D002568 7.4e-29 131.0 134 50.0
RcHm_v2.0_Chr3g0474021 Rosa chinensis HOM05D002400 ORTHO05D002568 1.6e-28 129.8 135 51.9
RcHm_v2.0_Chr3g0474171 Rosa chinensis HOM05D002400 ORTHO05D002568 6.3e-28 127.9 135 49.6
FAN09G2665 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.4e-27 125.9 130 50.8
FvH4_6g19010 Fragaria vesca HOM05D002400 ORTHO05D002568 3.1e-27 125.6 130 51.5
MD00G1221800 Malus domestica HOM05D002400 ORTHO05D002568 9.1e-27 124.0 129 49.6
FvH4_6g19020 Fragaria vesca HOM05D002400 ORTHO05D002568 1.2e-26 123.6 136 47.8
FvH4_6g33920 Fragaria vesca HOM05D002400 ORTHO05D002568 1.2e-26 123.6 135 47.4
FAN14G5626 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.2e-26 123.6 135 47.4
MD14G1026600 Malus domestica HOM05D002400 ORTHO05D002568 1.2e-26 123.6 134 48.5
FAN02G2106 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.5e-26 121.7 130 49.2
FAN14G3084 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.7e-25 119.8 119 52.9
RcHm_v2.0_Chr3g0474091 Rosa chinensis HOM05D002400 ORTHO05D002568 3.8e-25 118.6 137 44.5
FvH4_5g26410 Fragaria vesca HOM05D002400 ORTHO05D002568 1.4e-24 116.7 134 47.0
MD12G1026500 Malus domestica HOM05D002400 ORTHO05D002568 1.4e-24 116.7 115 52.2
MD14G1024100 Malus domestica HOM05D002400 ORTHO05D002568 1.9e-24 116.3 134 44.8
RcHm_v2.0_Chr7g0217271 Rosa chinensis HOM05D002400 ORTHO05D002568 2.5e-24 115.9 136 46.3
Prupe.7G108600 Prunus persica HOM05D002400 ORTHO05D002568 3.2e-24 115.5 135 44.4
FvH4_6g18954 Fragaria vesca HOM05D002400 ORTHO05D002568 4.2e-24 115.2 136 46.3
FAN18G2424 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.2e-24 115.2 134 46.3
FvH4_6g19040 Fragaria vesca HOM05D002400 ORTHO05D002568 7.2e-24 114.4 134 41.8
FvH4_6g33960 Fragaria vesca HOM05D002400 ORTHO05D002568 7.2e-24 114.4 135 45.9
FAN09G1471 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.4e-24 114.0 136 47.8
MD14G1025100 Malus domestica HOM05D002400 ORTHO05D002568 9.4e-24 114.0 124 46.0
MD12G1026800 Malus domestica HOM05D002400 ORTHO05D002568 1.6e-23 113.2 131 43.5
RcHm_v2.0_Chr3g0475391 Rosa chinensis HOM05D002400 ORTHO05D002568 1.0e-22 110.5 109 47.7
MD14G1024900 Malus domestica HOM05D002400 ORTHO05D002568 3.0e-22 109.0 126 46.8
FAN18G4571 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.9e-22 108.6 133 43.6
FvH4_5g26390 Fragaria vesca HOM05D002400 ORTHO05D002568 5.1e-22 108.2 136 43.4
RcHm_v2.0_Chr7g0205891 Rosa chinensis HOM05D002400 ORTHO05D002568 5.1e-22 108.2 134 46.3
FvH4_5g20530 Fragaria vesca HOM05D002400 ORTHO05D002568 8.8e-22 107.5 133 44.4
RcHm_v2.0_Chr7g0205961 Rosa chinensis HOM05D002400 ORTHO05D002568 8.8e-22 107.5 133 44.4
MD12G1202000 Malus domestica HOM05D002400 ORTHO05D002568 1.5e-21 106.7 134 43.3
FAN08G1360 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.3e-21 105.5 132 44.7
FAN14G2794 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.4e-21 105.1 138 42.8
FvH4_6g22710 Fragaria vesca HOM05D002400 ORTHO05D002568 9.7e-21 104.0 134 44.8
FAN09G3427 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.3e-20 103.6 138 42.0
MD04G1058800 Malus domestica HOM05D002400 ORTHO05D002568 1.3e-20 103.6 132 47.7
MD14G1026300 Malus domestica HOM05D002400 ORTHO05D002568 1.3e-20 103.6 133 46.6
FAN05G0221 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.7e-20 103.2 138 40.6
FAN14G5260 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.2e-20 102.8 138 42.0
MD14G1026000 Malus domestica HOM05D002400 ORTHO05D002568 2.2e-20 102.8 137 40.9
MD14G1026400 Malus domestica HOM05D002400 ORTHO05D002568 2.8e-20 102.4 133 45.9
FAN18G1895 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.7e-20 102.1 112 47.3
Prupe.7G106200 Prunus persica HOM05D002400 ORTHO05D002568 1.1e-19 100.5 113 51.3
RcHm_v2.0_Chr3g0473911 Rosa chinensis HOM05D002400 ORTHO05D002568 1.4e-19 100.1 136 41.2
FAN05G4159 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.8e-19 99.8 136 40.4
MD12G1217700 Malus domestica HOM05D002400 ORTHO05D002568 3.1e-19 99.0 133 40.6
FAN08G0492 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.3e-19 98.2 100 50.0
Prupe.6G269600 Prunus persica HOM05D002400 ORTHO05D002568 5.3e-19 98.2 105 48.6
FAN02G2515 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.9e-19 97.8 135 42.2
MD12G1201900 Malus domestica HOM05D002400 ORTHO05D002568 9.1e-19 97.4 142 40.1
FAN18G0377 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.2e-18 97.1 132 42.4
MD14G1025800 Malus domestica HOM05D002400 ORTHO05D002568 1.2e-18 97.1 131 42.0
Prupe.2G052100 Prunus persica HOM05D002400 ORTHO05D002568 1.2e-18 97.1 114 44.7
FvH4_6g18952 Fragaria vesca HOM05D002400 ORTHO05D002568 1.5e-18 96.7 133 39.8
MD12G1217800 Malus domestica HOM05D002400 ORTHO05D002568 1.5e-18 96.7 133 40.6
vmacro05682 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 2.6e-18 95.9 135 41.5
FvH4_6g18920 Fragaria vesca HOM05D002400 ORTHO05D002568 1.0e-17 94.0 136 39.0
FAN14G4887 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.0e-17 94.0 109 42.2
MD14G1026700 Malus domestica HOM05D002400 ORTHO05D002568 1.0e-17 94.0 162 38.9
Prupe.7G106400 Prunus persica HOM05D002400 ORTHO05D002568 1.0e-17 94.0 128 43.0
FAN06G0647 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.3e-17 93.6 126 42.1
FvH4_6g18982 Fragaria vesca HOM05D002400 ORTHO05D002568 2.2e-17 92.8 103 46.6
FAN02G3141 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.2e-17 92.8 105 41.0
RcHm_v2.0_Chr3g0473961 Rosa chinensis HOM05D002400 ORTHO05D002568 2.2e-17 92.8 140 40.0
FvH4_7g12363 Fragaria vesca HOM05D002400 ORTHO05D002568 2.9e-17 92.4 98 49.0
FAN09G1480 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.9e-17 92.4 136 37.5
RcHm_v2.0_Chr3g0458171 Rosa chinensis HOM05D002400 ORTHO05D002568 2.9e-17 92.4 106 45.3
FvH4_6g05280 Fragaria vesca HOM05D002400 ORTHO05D002568 3.8e-17 92.0 143 37.1
FAN14G3389 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.8e-17 92.0 143 37.1
RcHm_v2.0_Chr1g0330111 Rosa chinensis HOM05D002400 ORTHO05D002568 3.8e-17 92.0 142 40.8
FAN06G2837 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.0e-17 91.7 126 42.1
FAN14G4031 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.0e-17 91.7 88 48.9
FvH4_6g08300 Fragaria vesca HOM05D002400 ORTHO05D002568 6.5e-17 91.3 105 40.0
FAN14G3017 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.5e-17 91.3 105 40.0
Prupe.7G104800 Prunus persica HOM05D002400 ORTHO05D002568 6.5e-17 91.3 94 53.2
RcHm_v2.0_Chr3g0474141 Rosa chinensis HOM05D002400 ORTHO05D002568 6.5e-17 91.3 184 34.8
FvH4_6g19051 Fragaria vesca HOM05D002400 ORTHO05D002568 1.4e-16 90.1 134 36.6
FAN05G2337 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.4e-16 90.1 143 36.4
FAN14G5637 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.4e-16 90.1 143 36.4
vmacro12123 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 1.4e-16 90.1 134 41.0
FAN06G5021 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.9e-16 89.7 114 43.9
FvH4_1g23521 Fragaria vesca HOM05D002400 ORTHO05D002568 3.2e-16 89.0 139 38.8
FvH4_6g33902 Fragaria vesca HOM05D002400 ORTHO05D002568 3.2e-16 89.0 113 42.5
FAN05G1596 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.2e-16 89.0 105 38.1
FvH4_6g18950 Fragaria vesca HOM05D002400 ORTHO05D002568 4.2e-16 88.6 95 50.5
FAN05G1326 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.2e-16 88.6 95 51.6
FAN05G1294 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.4e-16 87.4 104 41.3
FAN04G0043 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.6e-15 86.7 105 44.8
MD14G1157200 Malus domestica HOM05D002400 ORTHO05D002568 1.6e-15 86.7 142 39.4
RcHm_v2.0_Chr3g0481121 Rosa chinensis HOM05D002400 ORTHO05D002568 1.6e-15 86.7 131 35.9
FvH4_7g04740 Fragaria vesca HOM05D002400 ORTHO05D002568 2.1e-15 86.3 123 40.7
FAN06G1414 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.1e-15 86.3 123 40.7
FAN09G4054 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.7e-15 85.9 111 41.4
RcHm_v2.0_Chr5g0069001 Rosa chinensis HOM05D002400 ORTHO05D002568 3.6e-15 85.5 183 32.8
FAN14G5775 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.7e-15 85.1 131 39.7
FAN05G2917 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.1e-15 84.7 124 38.7
RcHm_v2.0_Chr3g0474131 Rosa chinensis HOM05D002400 ORTHO05D002568 6.1e-15 84.7 86 51.2
Prupe.1G551800 Prunus persica HOM05D002400 ORTHO05D002568 7.9e-15 84.3 138 37.7
RcHm_v2.0_Chr3g0474161 Rosa chinensis HOM05D002400 ORTHO05D002568 1.4e-14 83.6 79 54.4
RcHm_v2.0_Chr5g0068981 Rosa chinensis HOM05D002400 ORTHO05D002568 1.4e-14 83.6 172 33.1
FvH4_6g18911 Fragaria vesca HOM05D002400 ORTHO05D002568 2.3e-14 82.8 124 37.9
FvH4_6g19370 Fragaria vesca HOM05D002400 ORTHO05D002568 2.3e-14 82.8 131 38.9
FAN18G0503 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.3e-14 82.8 81 51.9
MD04G1145400 Malus domestica HOM05D002400 ORTHO05D002568 2.3e-14 82.8 102 46.1
FAN14G5794 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.0e-14 82.4 82 53.7
FAN09G3087 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.9e-14 82.0 99 41.4
FvH4_6g19090 Fragaria vesca HOM05D002400 ORTHO05D002568 6.7e-14 81.3 100 46.0
FAN03G0307 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.8e-14 80.9 123 39.0
MD04G1145900 Malus domestica HOM05D002400 ORTHO05D002568 1.5e-13 80.1 104 45.2
FvH4_6g19361 Fragaria vesca HOM05D002400 ORTHO05D002568 3.3e-13 79.0 134 35.8
FAN14G5714 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.4e-13 78.6 137 36.5
MD12G1025400 Malus domestica HOM05D002400 ORTHO05D002568 5.7e-13 78.2 133 39.8
FAN06G4070 Fragaria x ananassa HOM05D002400 ORTHO05D002568 7.4e-13 77.8 124 38.7
Prupe.5G196300 Prunus persica HOM05D002400 ORTHO05D002568 7.4e-13 77.8 85 47.1
MD04G1145500 Malus domestica HOM05D002400 ORTHO05D002568 1.7e-12 76.6 154 35.7
vmacro05683 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 1.7e-12 76.6 154 33.1
FAN13G3133 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.2e-12 76.3 80 46.2
Dinv05457 Davidia involucrata HOM05D002400 ORTHO05D002568 2.8e-12 75.9 114 37.7
RcHm_v2.0_Chr3g0474181 Rosa chinensis HOM05D002400 ORTHO05D002568 4.8e-12 75.1 69 58.0
MD02G1269000 Malus domestica HOM05D002400 ORTHO05D002568 8.2e-12 74.3 83 48.2
Dinv02723 Davidia involucrata HOM05D002400 ORTHO05D002568 4.1e-11 72.0 113 39.8
FAN18G0208 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.3e-11 71.6 106 37.7
Haze_24215 Corylus avellana HOM05D002400 ORTHO05D002568 7.0e-11 71.2 143 32.9
FvH4_5g32301 Fragaria vesca HOM05D002400 ORTHO05D002568 7.0e-11 71.2 133 35.3
vmacro12117 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 9.1e-11 70.9 110 35.5
FvH4_6g18961 Fragaria vesca HOM05D002400 ORTHO05D002568 1.2e-10 70.5 184 27.7
Manes.09G032300 Manihot esculenta HOM05D002400 ORTHO05D002568 1.6e-10 70.1 140 30.0
MD14G1026200 Malus domestica HOM05D002400 ORTHO05D002568 2.0e-10 69.7 83 47.0
Haze_16779 Corylus avellana HOM05D002400 ORTHO05D002568 4.5e-10 68.6 140 33.6
FAN04G1411 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.5e-10 68.6 103 37.9
FAN09G0521 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.0e-09 67.4 102 35.3
Haze_04784 Corylus avellana HOM05D002400 ORTHO05D002568 1.3e-09 67.0 140 32.9
FvH4_5g29160 Fragaria vesca HOM05D002400 ORTHO05D002568 1.7e-09 66.6 105 35.2
FAN18G0337 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.7e-09 66.6 105 35.2
FAN04G2586 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.2e-09 66.2 81 46.9
Haze_04775 Corylus avellana HOM05D002400 ORTHO05D002568 3.8e-09 65.5 119 35.3
Cfa005419 Carpinus fangiana HOM05D002400 ORTHO05D002568 5.0e-09 65.1 128 34.4
FvH4_7g09171 Fragaria vesca HOM05D000003 ORTHO05D002568 5.0e-09 65.1 79 45.6
FAN04G1392 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.5e-09 64.3 105 34.3
Cfa005421 Carpinus fangiana HOM05D002400 ORTHO05D002568 1.1e-08 63.9 112 36.6
FAN05G2957 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.5e-08 63.5 95 41.1
Haze_24470 Corylus avellana HOM05D002400 ORTHO05D002568 2.5e-08 62.8 116 35.3
FAN09G4576 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.2e-08 62.4 55 50.9
MD15G1012200 Malus domestica HOM05D002400 ORTHO05D002568 4.2e-08 62.0 107 38.3
Cfa005420 Carpinus fangiana HOM05D002400 ORTHO05D002568 5.5e-08 61.6 93 39.8
Dinv02727 Davidia involucrata HOM05D002400 ORTHO05D002568 5.5e-08 61.6 114 31.6
FAN26G2620 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.5e-08 61.6 63 49.2
FAN19G0352 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.4e-08 60.8 82 39.0
Dinv05456 Davidia involucrata HOM05D002400 ORTHO05D002568 1.2e-07 60.5 114 31.6
FAN05G0305 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.2e-07 60.5 88 35.2
QL02p059625 Quercus lobata HOM05D002400 ORTHO05D002568 1.2e-07 60.5 88 38.6
TWI60G1609 Tripterygium wilfordii HOM05D002400 ORTHO05D002568 2.1e-07 59.7 131 34.4
TWI81G0137 Tripterygium wilfordii HOM05D002400 ORTHO05D002568 4.7e-07 58.5 138 33.3
FAN08G3505 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.1e-07 58.2 119 36.1
FAN10G1459 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.1e-07 58.2 53 49.1
FvH4_5g20611 Fragaria vesca HOM05D002400 ORTHO05D002568 8.0e-07 57.8 61 42.6
Cfa005946 Carpinus fangiana HOM05D002400 ORTHO05D002568 1.0e-06 57.4 87 36.8
Duzib132G1153 Durio zibethinus HOM05D002400 ORTHO05D002568 1.4e-06 57.0 119 29.4


User provided reference genes

Program Settings