Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 3.7e-28 127.5 63 100.0
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 1.3e-22 109.0 62 87.1
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.3e-20 102.4 62 80.6
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 2.8e-20 101.3 62 80.6
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 1.0e-17 92.8 62 67.7
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.2e-17 91.7 61 68.9
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 1.1e-16 89.4 62 64.5
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 1.0e-14 82.8 63 61.9
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 3.0e-14 81.3 63 65.1
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 6.7e-14 80.1 63 60.3
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 8.7e-14 79.7 63 66.7
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.5e-13 79.0 59 61.0
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 2.5e-13 78.2 63 61.9
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.3e-13 77.8 63 60.3
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 3.3e-13 77.8 63 60.3
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 4.3e-13 77.4 63 58.7
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 5.7e-13 77.0 63 60.3
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.6e-12 75.5 63 58.7
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 1.6e-12 75.5 61 57.4
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 2.2e-12 75.1 59 64.4
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 2.2e-12 75.1 59 64.4
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 2.2e-12 75.1 59 64.4
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 2.8e-12 74.7 59 64.4
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 2.8e-12 74.7 63 60.3
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 6.3e-12 73.6 59 62.7
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 6.3e-12 73.6 59 62.7
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 6.3e-12 73.6 59 64.4
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 1.1e-11 72.8 56 62.5
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 4.1e-11 70.9 48 70.8
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 9.1e-11 69.7 63 58.7
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 9.1e-11 69.7 63 55.6
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 1.5e-10 68.9 56 58.9
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 1.5e-10 68.9 59 55.9
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 4.5e-10 67.4 56 57.1
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 5.9e-10 67.0 56 55.4
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.0e-09 66.2 56 55.4
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.3e-09 65.9 56 58.9
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 1.3e-09 65.9 56 55.4
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.2e-09 65.1 56 55.4
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 3.8e-09 64.3 53 58.5
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 3.8e-09 64.3 61 52.5
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 5.0e-09 63.9 63 52.4
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 5.0e-09 63.9 53 56.6
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 8.5e-09 63.2 53 56.6
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 8.5e-09 63.2 53 56.6
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.9e-08 62.0 53 54.7
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 1.9e-08 62.0 62 46.8
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 2.5e-08 61.6 53 56.6
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 2.5e-08 61.6 53 56.6
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 2.5e-08 61.6 53 56.6
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 2.5e-08 61.6 53 56.6
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 2.5e-08 61.6 53 56.6
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 2.5e-08 61.6 53 56.6
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 2.5e-08 61.6 53 54.7
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 2.5e-08 61.6 58 55.2
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 3.2e-08 61.2 53 54.7
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 3.2e-08 61.2 53 52.8
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 3.2e-08 61.2 56 53.6
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 4.2e-08 60.8 56 53.6
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 4.2e-08 60.8 55 52.7
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 54.7
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 54.7
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 7.2e-08 60.1 53 56.6
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 7.2e-08 60.1 53 54.7
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 7.2e-08 60.1 53 56.6
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 7.2e-08 60.1 53 56.6
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 7.2e-08 60.1 53 54.7
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 7.2e-08 60.1 53 54.7
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 7.2e-08 60.1 56 53.6
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 9.4e-08 59.7 53 52.8
Glyma.10G076300 Glycine max HOM05D007252 ORTHO05D009074 1.2e-07 59.3 63 50.8
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 1.2e-07 59.3 61 44.3
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 1.6e-07 58.9 53 52.8
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 1.6e-07 58.9 49 51.0
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 2.1e-07 58.5 53 50.9
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 2.1e-07 58.5 56 51.8
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 2.7e-07 58.2 53 56.6
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 2.7e-07 58.2 56 50.0
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 2.7e-07 58.2 55 54.5
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 3.6e-07 57.8 58 46.6
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 3.6e-07 57.8 60 46.7
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.0e-06 56.2 53 52.8
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 1.0e-06 56.2 53 52.8
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 1.4e-06 55.8 53 52.8
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 1.4e-06 55.8 53 50.9
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.4e-06 55.8 53 50.9
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.4e-06 55.8 53 50.9
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.4e-06 55.8 53 50.9
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 1.8e-06 55.5 54 51.9
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 1.8e-06 55.5 46 56.5
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 2.3e-06 55.1 53 49.1
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 3.0e-06 54.7 53 47.2
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 3.0e-06 54.7 53 47.2
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 3.0e-06 54.7 53 47.2
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 3.0e-06 54.7 53 47.2
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 3.9e-06 54.3 62 45.2
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 3.9e-06 54.3 53 49.1
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 5.1e-06 53.9 52 48.1
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 8.8e-06 53.1 54 42.6
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 8.8e-06 53.1 56 46.4


User provided reference genes

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