Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G098300 Prunus persica HOM05D006689 ORTHO05D008349 4.6e-194 681.0 341 100.0
MD14G1035800 Malus domestica HOM05D006689 ORTHO05D008349 1.7e-151 539.7 350 78.9
FvH4_6g19910 Fragaria vesca HOM05D006689 ORTHO05D008349 1.8e-137 493.0 304 78.0
FAN14G3242 Fragaria x ananassa HOM05D006689 ORTHO05D008349 6.8e-129 464.5 304 74.7
FAN02G4476 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.5e-128 463.4 321 72.0
FAN05G1672 Fragaria x ananassa HOM05D006689 ORTHO05D008349 9.2e-126 454.1 304 73.4
MD12G1034600 Malus domestica HOM05D006689 ORTHO05D008349 6.6e-124 448.0 288 79.2
Psat3g030240 Pisum sativum HOM05D006689 ORTHO05D008349 9.6e-123 444.1 338 64.2
CSS0035173 Camellia sinensis var. sinensis HOM05D006689 ORTHO05D008349 1.6e-122 443.4 304 69.7
CANSAT64G2446 Cannabis sativa HOM05D006689 ORTHO05D008349 1.1e-121 440.7 343 65.9
Lalb_Chr01g0017911 Lupinus albus HOM05D006689 ORTHO05D008349 1.1e-121 440.7 324 65.7
Lj1g0003895 Lotus japonicus HOM05D006689 ORTHO05D008349 4.0e-121 438.7 331 65.3
Actinidia32058 Actinidia chinensis HOM05D006689 ORTHO05D008349 1.7e-119 433.3 332 66.0
PGR004G2039 Punica granatum HOM05D006689 ORTHO05D008349 1.7e-119 433.3 341 63.6
QL07p037495 Quercus lobata HOM05D006689 ORTHO05D008349 2.9e-119 432.6 342 65.5
TPR.G23318 Trifolium pratense HOM05D006689 ORTHO05D008349 2.9e-119 432.6 326 65.0
GSVIVG01033928001 Vitis vinifera HOM05D006689 ORTHO05D008349 1.9e-118 429.9 297 69.7
Lalb_Chr20g0111471 Lupinus albus HOM05D006689 ORTHO05D008349 2.4e-118 429.5 299 67.9
TWI74G1155 Tripterygium wilfordii HOM05D006689 ORTHO05D008349 3.2e-118 429.1 334 65.3
TAR633G1471 Trochodendron aralioides HOM05D006689 ORTHO05D008349 2.1e-117 426.4 348 62.4
Aqoxy4G02685 Aquilegia oxysepala HOM05D006689 ORTHO05D008349 1.7e-116 423.3 315 63.2
Duzib106G1273 Durio zibethinus HOM05D006689 ORTHO05D008349 3.9e-116 422.2 344 63.4
Cfa016668 Carpinus fangiana HOM05D006689 ORTHO05D008349 5.6e-115 418.3 309 68.0
FAN09G0196 Fragaria x ananassa HOM05D006689 ORTHO05D008349 9.6e-115 417.5 406 56.2
Hma1.2p1_0064F.1_g034840 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 1.6e-114 416.8 296 67.9
QL07p037513 Quercus lobata HOM05D006689 ORTHO05D008349 2.1e-114 416.4 310 66.1
Atru.chr8.1397 Acer truncatum HOM05D006689 ORTHO05D008349 1.8e-113 413.3 302 67.2
Cc06_g06350 Coffea canephora HOM05D006689 ORTHO05D008349 3.1e-113 412.5 309 63.1
Potri.016G072700 Populus trichocarpa HOM05D006689 ORTHO05D008349 3.1e-113 412.5 300 68.3
CiPaw.09G018700 Carya illinoinensis HOM05D006689 ORTHO05D008349 2.0e-112 409.8 322 64.0
Cpa.g.sc104.62 Carica papaya HOM05D006689 ORTHO05D008349 2.6e-112 409.5 343 61.5
Eucgr.A02606 Eucalyptus grandis HOM05D006689 ORTHO05D008349 3.8e-111 405.6 319 61.4
Nn6g34760 Nelumbo nucifera HOM05D006689 ORTHO05D008349 4.9e-111 405.2 331 61.3
BcaB04g18654 Brassica carinata HOM05D006689 ORTHO05D008349 1.4e-110 403.7 326 60.7
Aa31LG3G5030 Aethionema arabicum HOM05D006689 ORTHO05D008349 7.1e-110 401.4 327 61.8
Solyc01g007790.4 Solanum lycopersicum HOM05D006689 ORTHO05D008349 1.2e-109 400.6 328 59.1
AL3G23170 Arabidopsis lyrata HOM05D006689 ORTHO05D008349 4.6e-109 398.7 322 61.5
CARHR086170 Cardamine hirsuta HOM05D006689 ORTHO05D008349 4.6e-109 398.7 299 65.2
Thhalv10021180m.g Eutrema salsugineum HOM05D006689 ORTHO05D008349 7.9e-109 397.9 307 62.9
Sopen01g003330 Solanum pennellii HOM05D006689 ORTHO05D008349 3.9e-108 395.6 305 61.6
PSO384G4437 Papaver somniferum HOM05D006689 ORTHO05D008349 5.1e-108 395.2 333 56.8
Sp3g09850 Schrenkiella parvula HOM05D006689 ORTHO05D008349 5.1e-108 395.2 306 64.1
PSO339G4581 Papaver somniferum HOM05D006689 ORTHO05D008349 8.7e-108 394.4 297 61.3
Sc07g0005680 Simmondsia chinensis HOM05D006689 ORTHO05D008349 8.7e-108 394.4 299 64.2
A03p37220 Brassica napus HOM05D006689 ORTHO05D008349 1.9e-107 393.3 319 61.1
Gorai.009G398000 Gossypium raimondii HOM05D006689 ORTHO05D008349 2.5e-107 392.9 329 60.2
BraA03t12881Z Brassica rapa HOM05D006689 ORTHO05D008349 7.4e-107 391.3 300 64.0
CsaV3_6G040970 Cucumis sativus L. HOM05D006689 ORTHO05D008349 7.4e-107 391.3 295 60.0
C03p45070 Brassica napus HOM05D006689 ORTHO05D008349 2.8e-106 389.4 311 62.4
BraA05t22567Z Brassica rapa HOM05D006689 ORTHO05D008349 4.8e-106 388.7 297 63.3
AT3G11620 Arabidopsis thaliana HOM05D006689 ORTHO05D008349 6.2e-106 388.3 282 66.3
C05p56320 Brassica napus HOM05D006689 ORTHO05D008349 6.2e-106 388.3 306 62.7
BcaC01g04099 Brassica carinata HOM05D006689 ORTHO05D008349 8.1e-106 387.9 310 62.3
RcHm_v2.0_Chr3g0475311 Rosa chinensis HOM05D006689 ORTHO05D008349 1.4e-105 387.1 235 79.6
FAN05G0890 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.4e-105 386.3 263 72.6
A05p37720 Brassica napus HOM05D006689 ORTHO05D008349 4.0e-105 385.6 332 59.3
Carub.0003s1094 Capsella rubella HOM05D006689 ORTHO05D008349 4.0e-105 385.6 325 59.4
BolC5t34296H Brassica oleracea HOM05D006689 ORTHO05D008349 1.3e-103 380.6 282 64.9
DCAR_013430 Daucus carota HOM05D006689 ORTHO05D008349 1.4e-102 377.1 332 57.8
Oeu017715.1 Olea europaea HOM05D006689 ORTHO05D008349 1.9e-102 376.7 314 58.9
Ciclev10011965m.g Citrus clementina HOM05D006689 ORTHO05D008349 4.2e-102 375.6 332 55.4
HPP92_023075 Vanilla planifolia HOM05D006689 ORTHO05D008349 7.9e-101 371.3 297 60.6
BcaB06g25602 Brassica carinata HOM05D006689 ORTHO05D008349 1.0e-100 370.9 310 60.3
arahy.Tifrunner.gnm1.ann1.YAPI8V Arachis hypogaea HOM05D006689 ORTHO05D008349 1.8e-100 370.2 333 55.3
Phvul.001G194040 Phaseolus vulgaris HOM05D006689 ORTHO05D008349 3.9e-100 369.0 290 61.4
Zm00001eb362600 Zea mays HOM05D006689 ORTHO05D008349 8.7e-100 367.9 297 59.9
Haze_19679 Corylus avellana HOM05D006689 ORTHO05D008349 2.4e-97 359.8 350 56.3
MBI17_g00993_MAGBIO Magnolia biondii HOM05D006689 ORTHO05D008349 5.3e-97 358.6 299 58.9
BcaC05g29349 Brassica carinata HOM05D006689 ORTHO05D008349 6.9e-97 358.2 280 62.1
HanXRQChr13g0398201 Helianthus annuus HOM05D006689 ORTHO05D008349 1.2e-96 357.5 308 54.5
Sed0011891 Sechium edule HOM05D006689 ORTHO05D008349 2.5e-94 349.7 259 62.5
Rhsim03G0067100 Rhododendron simsii HOM05D006689 ORTHO05D008349 4.2e-94 349.0 458 44.1
Nitab4.5_0000665g0040 Nicotiana tabacum HOM05D006689 ORTHO05D008349 2.3e-92 343.2 314 53.8
ClCG04G010350 Citrullus lanatus HOM05D006689 ORTHO05D008349 3.9e-92 342.4 295 55.3
ECA233G1524 Erigeron canadensis HOM05D006689 ORTHO05D008349 1.1e-91 340.9 282 56.7
SEGI_26711 Sequoiadendron giganteum HOM05D006689 ORTHO05D008349 3.3e-91 339.3 301 53.5
Peaxi162Scf00419g00069 Petunia axillaris HOM05D006689 ORTHO05D008349 3.7e-90 335.9 321 54.2
arahy.Tifrunner.gnm1.ann1.ZIE5B9 Arachis hypogaea HOM05D006689 ORTHO05D008349 2.4e-89 333.2 333 51.4
Medtr7g105800 Medicago truncatula HOM05D006689 ORTHO05D008349 3.1e-89 332.8 238 65.5
ATR0772G132 Amborella trichopoda HOM05D006689 ORTHO05D008349 3.8e-87 325.9 280 57.1
Gohir.D04G095300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 1.1e-83 314.3 250 63.2
Manes.09G048600 Manihot esculenta HOM05D006689 ORTHO05D008349 1.6e-82 310.5 229 67.7
Pp3c13_7330 Physcomitrium patens HOM05D006689 ORTHO05D008349 4.8e-82 308.9 336 45.5
Lsat_1_v5_gn_6_35180 Lactuca sativa HOM05D006689 ORTHO05D008349 6.9e-81 305.1 284 52.8
Sabra16G0075500 Salix brachista HOM05D006689 ORTHO05D008349 2.2e-79 300.1 344 51.5
Migut.L01819 Erythranthe guttata HOM05D006689 ORTHO05D008349 7.9e-77 291.6 235 58.3
Nitab4.5_0000020g0370 Nicotiana tabacum HOM05D006689 ORTHO05D008349 7.4e-75 285.0 233 57.5
Thecc.05G100700 Theobroma cacao HOM05D006689 ORTHO05D008349 5.0e-71 272.3 208 65.4
Hma1.2p1_0064F.1_g034850 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 1.2e-69 267.7 202 64.4
SalBow5G2063 Salvia bowleyana HOM05D006689 ORTHO05D008349 1.8e-68 263.8 341 45.2
SMO272G0021 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 5.7e-67 258.8 281 43.8
CAN.G574.36 Capsicum annuum HOM05D006689 ORTHO05D008349 1.3e-66 257.7 208 59.6
SMO165G0131 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 2.5e-62 243.4 311 39.2
AUR62037035 Chenopodium quinoa HOM05D006689 ORTHO05D008349 2.0e-56 223.8 193 59.6
AUR62006266 Chenopodium quinoa HOM05D006689 ORTHO05D008349 2.1e-53 213.8 193 58.0
Glyma.19G197900 Glycine max HOM05D006689 ORTHO05D008349 3.4e-51 206.5 298 39.6
Hund19873 Selenicereus undatus HOM05D006689 ORTHO05D008349 5.7e-51 205.7 302 42.4
Glyma.03G200300 Glycine max HOM05D006689 ORTHO05D008349 1.3e-50 204.5 146 65.8
MELO3C024575.2 Cucumis melo HOM05D006689 ORTHO05D008349 3.1e-49 199.9 302 39.7
CDE02G4301 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 5.4e-49 199.1 172 57.0
EL10Ac7g16816 Beta vulgaris HOM05D006689 ORTHO05D008349 1.6e-48 197.6 155 65.8
vmacro07460 Vaccinium macrocarpon HOM05D006689 ORTHO05D008349 2.1e-45 187.2 426 33.6
PGSC0003DMG400016416 Solanum tuberosum HOM05D006689 ORTHO05D008349 3.6e-45 186.4 143 58.7
unitig_22.g6018 Utricularia gibba HOM05D006689 ORTHO05D008349 9.8e-43 178.3 297 34.0
BolC3t16769H Brassica oleracea HOM05D006689 ORTHO05D008349 2.8e-42 176.8 127 69.3
Gohir.A04G061300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 6.3e-42 175.6 105 77.1
Gohir.A04G061585 Gossypium hirsutum HOM05D006689 ORTHO05D008349 7.3e-38 162.2 156 52.6
COL.COLO4_29616 Corchorus olitorius HOM05D006689 ORTHO05D008349 1.0e-31 141.7 84 77.4
SGA_v2.0_scaffold184G40008 Striga asiatica HOM05D006689 ORTHO05D008349 3.6e-29 133.3 95 60.0
Aa31LG3G5020 Aethionema arabicum HOM05D006689 ORTHO05D008349 1.8e-28 131.0 87 69.0
CDE02G1185 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 1.8e-28 131.0 89 61.8
Actinidia03903 Actinidia chinensis HOM05D006689 ORTHO05D008349 4.0e-28 129.8 142 50.7
Ah.08g210180 Amaranthus hybridus HOM05D006689 ORTHO05D008349 1.1e-25 121.7 76 71.1
Cre09.g388319 Chlamydomonas reinhardtii HOM05D006689 ORTHO05D008349 7.8e-24 115.5 331 27.8
MCO04G525 Micromonas commoda HOM05D006689 ORTHO05D008349 9.5e-22 108.6 318 27.0
RcHm_v2.0_Chr3g0475321 Rosa chinensis HOM05D006689 ORTHO05D008349 9.5e-22 108.6 76 65.8
PRCOL_00001274 Prasinoderma coloniale HOM05D006689 ORTHO05D008349 4.0e-20 103.2 292 28.1
Cfa021542 Carpinus fangiana HOM05D000750 ORTHO05D011662 2.7e-08 63.9 62 53.2
Hma1.2p1_1624F.1_g294270 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 6.6e-07 59.3 43 67.4
arahy.Tifrunner.gnm1.ann1.HW4B1R Arachis hypogaea HOM05D006689 ORTHO05D008349 2.5e-06 57.4 52 46.2
Ca_12392_v3 Cicer arietinum L. HOM05D000112 ORTHO05D023238 2.5e-06 57.4 116 35.3
Sabra16G0075600 Salix brachista HOM05D006689 ORTHO05D008349 2.5e-06 57.4 42 61.9


User provided reference genes

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