Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G096900 Prunus persica HOM05D018155 ORTHO05D020655 4.8e-147 524.6 292 100.0
MD14G1037700 Malus domestica HOM05D018155 ORTHO05D020655 3.0e-72 276.2 306 53.9
RcHm_v2.0_Chr3g0475721 Rosa chinensis HOM05D018155 ORTHO05D020655 1.1e-29 134.8 305 36.1
FAN05G0347 Fragaria x ananassa HOM05D018155 ORTHO05D020655 4.9e-27 125.9 295 33.2
FAN05G0995 Fragaria x ananassa HOM05D018155 ORTHO05D020655 4.9e-27 125.9 295 33.2
FvH4_6g20200 Fragaria vesca HOM05D018155 ORTHO05D020655 3.9e-24 116.3 294 31.3
FAN14G3766 Fragaria x ananassa HOM05D018155 ORTHO05D020655 5.1e-24 115.9 294 31.3
CiPaw.09G020400 Carya illinoinensis HOM05D008136 ORTHO05D002052 2.2e-19 100.5 290 30.3
Haze_19713 Corylus avellana HOM05D008136 ORTHO05D002052 2.3e-16 90.5 285 25.6
Eucgr.A02595 Eucalyptus grandis HOM05D008136 ORTHO05D002052 6.7e-16 89.0 237 28.3
Thecc.05G103000 Theobroma cacao HOM05D008136 ORTHO05D002052 1.1e-15 88.2 268 28.4
Cfa016687 Carpinus fangiana HOM05D008136 ORTHO05D002052 2.5e-15 87.0 299 28.8
QL07p036911 Quercus lobata HOM05D008136 ORTHO05D002052 2.5e-15 87.0 204 28.4
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 2.5e-15 87.0 265 28.3
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 3.3e-15 86.7 190 34.2
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 3.3e-15 86.7 276 26.8
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 1.3e-14 84.7 289 27.0
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 1.6e-14 84.3 287 26.5
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 6.3e-14 82.4 295 25.8
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 6.9e-13 79.0 263 26.2
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 1.2e-12 78.2 263 26.2
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 2.6e-12 77.0 174 28.2
Duzib106G1810 Durio zibethinus HOM05D008136 ORTHO05D002052 2.6e-12 77.0 272 26.1
BcaC07g39611 Brassica carinata HOM05D008136 ORTHO05D002052 4.5e-12 76.3 295 27.5
BolC8t50390H Brassica oleracea HOM05D008136 ORTHO05D002052 4.5e-12 76.3 295 27.5
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 4.5e-12 76.3 261 27.2
PGR004G1626 Punica granatum HOM05D008136 ORTHO05D002052 4.5e-12 76.3 249 24.1
Sabra06G0157200 Salix brachista HOM05D008136 ORTHO05D002052 5.9e-12 75.9 174 26.4
TWI74G0144 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 5.9e-12 75.9 298 29.5
C08p27700 Brassica napus HOM05D008136 ORTHO05D002052 7.6e-12 75.5 266 27.4
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 7.6e-12 75.5 270 27.0
Manes.08G032700 Manihot esculenta HOM05D008136 ORTHO05D002052 1.3e-11 74.7 295 27.1
BcaB01g00366 Brassica carinata HOM05D008136 ORTHO05D002052 1.7e-11 74.3 198 29.8
CARHR162230 Cardamine hirsuta HOM05D008136 ORTHO05D002052 1.7e-11 74.3 242 28.1
TWI53G0569 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 1.7e-11 74.3 289 28.7
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 2.2e-11 73.9 264 24.6
Lj5g0011569 Lotus japonicus HOM05D008136 ORTHO05D002052 2.2e-11 73.9 201 26.4
Atru.chr8.1380 Acer truncatum HOM05D008136 ORTHO05D002052 2.9e-11 73.6 274 25.5
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 2.9e-11 73.6 264 26.1
MSTRG.21015 Avicennia marina HOM05D002687 ORTHO05D002052 2.9e-11 73.6 261 27.6
Nn6g34711 Nelumbo nucifera HOM05D002687 ORTHO05D002052 2.9e-11 73.6 253 28.9
Sp5g09840 Schrenkiella parvula HOM05D008136 ORTHO05D002052 2.9e-11 73.6 265 27.5
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 3.8e-11 73.2 262 25.2
COL.COLO4_29586 Corchorus olitorius HOM05D008136 ORTHO05D002052 3.8e-11 73.2 267 25.8
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.8e-11 73.2 177 28.8
TAR633G1301 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.8e-11 73.2 177 29.9
Ca_09051_v3 Cicer arietinum L. HOM05D008136 ORTHO05D002052 5.0e-11 72.8 193 26.4
Thhalv10010982m.g Eutrema salsugineum HOM05D008136 ORTHO05D002052 5.0e-11 72.8 284 28.2
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 8.5e-11 72.0 264 23.9
Potri.016G071200 Populus trichocarpa HOM05D038355 ORTHO05D002052 8.5e-11 72.0 288 23.3
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 1.1e-10 71.6 175 24.6
Nn2g14283 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.1e-10 71.6 231 24.7
Aa31LG5G8690 Aethionema arabicum HOM05D002687 ORTHO05D002052 1.9e-10 70.9 261 31.4
arahy.Tifrunner.gnm1.ann1.AI123M Arachis hypogaea HOM05D002687 ORTHO05D002052 2.5e-10 70.5 254 26.0
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 2.5e-10 70.5 271 26.6
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 2.5e-10 70.5 261 25.3
A09p45540 Brassica napus HOM05D008136 ORTHO05D002052 3.2e-10 70.1 292 28.4
BraA09t40016Z Brassica rapa HOM05D008136 ORTHO05D002052 3.2e-10 70.1 292 28.4
Carub.0005s1885 Capsella rubella HOM05D008136 ORTHO05D002052 5.5e-10 69.3 177 28.2
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 5.5e-10 69.3 265 26.8
Lalb_Chr06g0172611 Lupinus albus HOM05D008136 ORTHO05D002052 5.5e-10 69.3 272 25.0
Potri.009G019800 Populus trichocarpa HOM05D002687 ORTHO05D002052 5.5e-10 69.3 183 27.9
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.5e-10 69.3 173 26.0
CiPaw.10G016800 Carya illinoinensis HOM05D008136 ORTHO05D002052 9.3e-10 68.6 178 28.1
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 9.3e-10 68.6 262 24.4
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 9.3e-10 68.6 270 24.4
FvH4_3g26690 Fragaria vesca HOM05D002687 ORTHO05D002052 1.2e-09 68.2 266 24.1
Medtr7g106130 Medicago truncatula HOM05D008136 ORTHO05D002052 1.2e-09 68.2 291 25.1
Sed0011968 Sechium edule HOM05D008136 ORTHO05D002052 1.2e-09 68.2 274 25.5
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 1.2e-09 68.2 272 25.7
BcaC06g32916 Brassica carinata HOM05D008136 ORTHO05D002052 1.6e-09 67.8 263 27.8
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 1.6e-09 67.8 253 24.9
FAN13G1417 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.6e-09 67.8 169 26.6
FAN21G1704 Fragaria x ananassa HOM05D002687 ORTHO05D002052 1.6e-09 67.8 266 24.1
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 1.6e-09 67.8 169 27.8
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 2.1e-09 67.4 175 26.3
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 2.1e-09 67.4 272 25.4
A03p48880 Brassica napus HOM05D008136 ORTHO05D002052 2.7e-09 67.0 177 29.4
BraA03t13990Z Brassica rapa HOM05D008136 ORTHO05D002052 2.7e-09 67.0 177 29.4
AUR62031792 Chenopodium quinoa HOM05D002687 ORTHO05D002052 2.7e-09 67.0 180 26.1
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 2.7e-09 67.0 174 27.6
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 2.7e-09 67.0 260 24.6
unitig_27.g25123 Utricularia gibba HOM05D000738 ORTHO05D000675 2.7e-09 67.0 196 28.1
AUR62001543 Chenopodium quinoa HOM05D002687 ORTHO05D002052 3.6e-09 66.6 175 24.0
FAN11G1248 Fragaria x ananassa HOM05D002687 ORTHO05D002052 3.6e-09 66.6 264 23.5
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 3.6e-09 66.6 238 22.7
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 3.6e-09 66.6 272 25.4
BcaC06g33391 Brassica carinata HOM05D008136 ORTHO05D002052 4.6e-09 66.2 176 29.0
C07p46980 Brassica napus HOM05D008136 ORTHO05D002052 4.6e-09 66.2 176 29.0
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 4.6e-09 66.2 178 28.1
BolC7t45215H Brassica oleracea HOM05D008136 ORTHO05D002052 4.6e-09 66.2 176 29.0
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 4.6e-09 66.2 180 25.6
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 4.6e-09 66.2 177 27.1
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 6.1e-09 65.9 178 28.1
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 6.1e-09 65.9 178 28.1
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 6.1e-09 65.9 257 24.1
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 6.1e-09 65.9 256 27.0
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 6.1e-09 65.9 179 29.1
FAN16G1005 Fragaria x ananassa HOM05D002687 ORTHO05D002052 7.9e-09 65.5 266 23.3
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 7.9e-09 65.5 273 23.8
Ca_01639_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 1.0e-08 65.1 258 24.0
Oeu009048.1 Olea europaea HOM05D002687 ORTHO05D002052 1.0e-08 65.1 256 24.2
THA.LOC104825213 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 1.3e-08 64.7 287 23.3
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.3e-08 64.7 255 25.5
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.3e-08 64.7 255 25.5
Atru.chr8.1376 Acer truncatum HOM05D015120 ORTHO05D010666 1.8e-08 64.3 182 28.0
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 1.8e-08 64.3 178 27.0
MSTRG.12384 Avicennia marina HOM05D002687 ORTHO05D002052 1.8e-08 64.3 263 26.2
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 1.8e-08 64.3 177 27.1
Sed0009075 Sechium edule HOM05D002687 ORTHO05D002052 1.8e-08 64.3 266 24.1
EL10Ac7g16313 Beta vulgaris HOM05D002687 ORTHO05D002052 2.3e-08 63.9 173 26.0
FAN18G4184 Fragaria x ananassa HOM05D003158 ORTHO05D003560 2.3e-08 63.9 167 28.7
Lj1g0025222 Lotus japonicus HOM05D008136 ORTHO05D002052 2.3e-08 63.9 251 23.5
Medtr2g087000 Medicago truncatula HOM05D002687 ORTHO05D002052 2.3e-08 63.9 228 24.6
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 3.0e-08 63.5 263 25.5
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 3.0e-08 63.5 267 26.6
Duzib093G0447 Durio zibethinus HOM05D008136 ORTHO05D002052 3.0e-08 63.5 309 22.3
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 3.9e-08 63.2 279 24.4
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 3.9e-08 63.2 268 23.5
AL4G21170 Arabidopsis lyrata HOM05D002687 ORTHO05D002052 5.1e-08 62.8 178 27.5
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 5.1e-08 62.8 278 25.2
RcHm_v2.0_Chr7g0211331 Rosa chinensis HOM05D010052 ORTHO05D010666 5.1e-08 62.8 176 25.6
Thhalv10002076m.g Eutrema salsugineum HOM05D002687 ORTHO05D002052 6.7e-08 62.4 177 28.2
THA.LOC104800513 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 6.7e-08 62.4 179 28.5
TPR.G35558 Trifolium pratense HOM05D008136 ORTHO05D002052 6.7e-08 62.4 249 27.3
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 6.7e-08 62.4 251 26.7
CiPaw.14G095600 Carya illinoinensis HOM05D002687 ORTHO05D002052 8.7e-08 62.0 165 24.8
CiPaw.14G095800 Carya illinoinensis HOM05D002687 ORTHO05D002052 8.7e-08 62.0 165 24.8
CiPaw.14G095900 Carya illinoinensis HOM05D002687 ORTHO05D002052 8.7e-08 62.0 165 25.5
Haze_23313 Corylus avellana HOM05D002687 ORTHO05D002052 8.7e-08 62.0 265 25.3
FAN18G3409 Fragaria x ananassa HOM05D010052 ORTHO05D010666 8.7e-08 62.0 178 26.4
Gohir.D07G116000 Gossypium hirsutum HOM05D002687 ORTHO05D002052 8.7e-08 62.0 175 23.4
Gohir.D09G097800 Gossypium hirsutum HOM05D002687 ORTHO05D002052 8.7e-08 62.0 191 25.7
Gorai.006G114600 Gossypium raimondii HOM05D002687 ORTHO05D002052 8.7e-08 62.0 191 25.7
BcaB02g10079 Brassica carinata HOM05D002687 ORTHO05D002052 1.1e-07 61.6 247 25.9
BcaC01g04930 Brassica carinata HOM05D002687 ORTHO05D002052 1.1e-07 61.6 177 28.8
C03p31980 Brassica napus HOM05D002687 ORTHO05D002052 1.1e-07 61.6 177 28.8
BolC3t15541H Brassica oleracea HOM05D002687 ORTHO05D002052 1.1e-07 61.6 177 28.8
FAN04G3011 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.1e-07 61.6 185 25.4
Gorai.001G124500 Gossypium raimondii HOM05D002687 ORTHO05D002052 1.1e-07 61.6 175 23.4
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 1.1e-07 61.6 259 24.3
AT3G52460 Arabidopsis thaliana HOM05D008136 ORTHO05D002052 1.5e-07 61.2 256 29.7
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 1.5e-07 61.2 173 28.3
FvH4_5g22901 Fragaria vesca HOM05D010052 ORTHO05D010666 1.5e-07 61.2 176 26.1
Glyma.13G313600 Glycine max HOM05D002687 ORTHO05D002052 1.5e-07 61.2 199 22.6
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 1.9e-07 60.8 180 25.6
A03p26690 Brassica napus HOM05D002687 ORTHO05D002052 2.5e-07 60.5 177 28.8
BraA03t11881Z Brassica rapa HOM05D002687 ORTHO05D002052 2.5e-07 60.5 177 28.8
RcHm_v2.0_Chr5g0048091 Rosa chinensis HOM05D002687 ORTHO05D002052 2.5e-07 60.5 269 23.8
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 3.3e-07 60.1 262 23.3
PGR119G0132 Punica granatum HOM05D002687 ORTHO05D002052 4.3e-07 59.7 175 26.3
Ciclev10013405m.g Citrus clementina HOM05D008136 ORTHO05D002052 5.7e-07 59.3 279 24.4
Ciclev10029176m.g Citrus clementina HOM05D002687 ORTHO05D002052 7.4e-07 58.9 263 27.8
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 7.4e-07 58.9 263 24.0
THA.LOC104823630 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 7.4e-07 58.9 282 25.2
Duzib170G0577 Durio zibethinus HOM05D002687 ORTHO05D002052 9.7e-07 58.5 163 24.5
Gohir.A07G112600 Gossypium hirsutum HOM05D002687 ORTHO05D002052 9.7e-07 58.5 163 23.3
Psat5g260320 Pisum sativum HOM05D002687 ORTHO05D002052 9.7e-07 58.5 240 27.5
Thecc.09G275200 Theobroma cacao HOM05D002687 ORTHO05D002052 9.7e-07 58.5 163 25.2
CAN.G1463.1 Capsicum annuum HOM05D002687 ORTHO05D002065 1.3e-06 58.2 174 25.3
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.3e-06 58.2 290 23.4
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 1.6e-06 57.8 174 25.3
RcHm_v2.0_Chr3g0475711 Rosa chinensis HOM05D002687 ORTHO05D002052 1.6e-06 57.8 180 25.0
SGA_v2.0_scaffold100G29631 Striga asiatica HOM05D002687 ORTHO05D002052 1.6e-06 57.8 253 23.3
Eucgr.J00544 Eucalyptus grandis HOM05D002687 ORTHO05D002052 2.2e-06 57.4 270 24.4
Glyma.19G199000 Glycine max HOM05D008136 ORTHO05D002052 2.2e-06 57.4 179 25.7
Prupe.7G097000 Prunus persica HOM05D002687 ORTHO05D002052 2.2e-06 57.4 176 24.4
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 2.2e-06 57.4 272 22.1
Solyc06g074050.3 Solanum lycopersicum HOM05D002687 ORTHO05D002052 2.2e-06 57.4 168 24.4
CiPaw.14G095400 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.8e-06 57.0 166 25.9
CANSAT64G0025 Cannabis sativa HOM05D008136 ORTHO05D002052 3.7e-06 56.6 182 22.5
Lalb_Chr14g0376011 Lupinus albus HOM05D002687 ORTHO05D002052 3.7e-06 56.6 230 25.7
MBI01_g04539_MAGBIO Magnolia biondii HOM05D002687 ORTHO05D002052 6.3e-06 55.8 265 25.7
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 6.3e-06 55.8 290 22.4
Lsat_1_v5_gn_3_114421 Lactuca sativa HOM05D002687 ORTHO05D002052 8.2e-06 55.5 175 23.4
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 8.2e-06 55.5 168 23.2
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 8.2e-06 55.5 168 23.2


User provided reference genes

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