Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G095300 Prunus persica HOM05D002350 ORTHO05D000091 2.3e-84 315.5 150 100.0
Prupe.7G221200 Prunus persica HOM05D002350 ORTHO05D000091 1.7e-31 139.8 91 80.2
MD02G1064400 Malus domestica HOM05D002350 ORTHO05D000091 2.6e-24 115.9 92 67.4
FAN26G1444 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.4e-24 115.5 91 62.6
FAN26G3334 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.4e-24 115.5 91 62.6
RcHm_v2.0_Chr2g0091711 Rosa chinensis HOM05D002350 ORTHO05D000091 3.4e-24 115.5 91 62.6
FAN19G1217 Fragaria x ananassa HOM05D002350 ORTHO05D000091 1.3e-23 113.6 91 61.5
FAN23G2545 Fragaria x ananassa HOM05D002350 ORTHO05D000091 1.7e-23 113.2 91 60.4
FvH4_1g05980 Fragaria vesca HOM05D002350 ORTHO05D000091 3.8e-23 112.1 91 60.4
MD15G1195400 Malus domestica HOM05D002350 ORTHO05D000091 6.7e-20 101.3 91 57.1
FvH4_1g05990 Fragaria vesca HOM05D002350 ORTHO05D000091 6.9e-17 91.3 101 50.5
FAN19G2534 Fragaria x ananassa HOM05D002350 ORTHO05D000091 6.9e-17 91.3 101 50.5
Ciclev10007331m.g Citrus clementina HOM05D002350 ORTHO05D000091 5.9e-16 88.2 88 48.9
MELO3C015406.2 Cucumis melo HOM05D002350 ORTHO05D000091 5.9e-16 88.2 91 51.6
CsaV3_1G039730 Cucumis sativus L. HOM05D002350 ORTHO05D000091 1.3e-15 87.0 91 51.6
Atru.chr7.1447 Acer truncatum HOM05D002350 ORTHO05D000091 1.7e-15 86.7 91 49.5
PGR102G2642 Punica granatum HOM05D002350 ORTHO05D000091 1.7e-15 86.7 84 54.8
CANSAT56G1437 Cannabis sativa HOM05D002350 ORTHO05D000091 5.0e-15 85.1 88 51.1
Sed0013258 Sechium edule HOM05D002350 ORTHO05D000091 5.0e-15 85.1 91 51.6
Cfa003192 Carpinus fangiana HOM05D002350 ORTHO05D000091 8.5e-15 84.3 92 46.7
Lalb_Chr14g0371831 Lupinus albus HOM05D002350 ORTHO05D000091 8.5e-15 84.3 106 42.5
RcHm_v2.0_Chr5g0014401 Rosa chinensis HOM05D002350 ORTHO05D000091 3.2e-14 82.4 119 41.2
CiPaw.03G226000 Carya illinoinensis HOM05D002350 ORTHO05D000091 4.2e-14 82.0 92 50.0
Cfa003194 Carpinus fangiana HOM05D002350 ORTHO05D000091 5.5e-14 81.6 92 47.8
Phvul.004G176400 Phaseolus vulgaris HOM05D002350 ORTHO05D000091 7.2e-14 81.3 92 46.7
TPR.G21372 Trifolium pratense HOM05D002350 ORTHO05D000091 7.2e-14 81.3 85 47.1
Haze_25813 Corylus avellana HOM05D002350 ORTHO05D000091 1.2e-13 80.5 92 46.7
Gorai.001G008800 Gossypium raimondii HOM05D002350 ORTHO05D000091 4.6e-13 78.6 88 45.5
Nn8g39091 Nelumbo nucifera HOM05D002350 ORTHO05D000091 4.6e-13 78.6 85 47.1
Potri.006G164400 Populus trichocarpa HOM05D002350 ORTHO05D000091 6.1e-13 78.2 119 39.5
COL.COLO4_34763 Corchorus olitorius HOM05D002350 ORTHO05D000091 7.9e-13 77.8 93 46.2
RcHm_v2.0_Chr2g0091671 Rosa chinensis HOM05D002350 ORTHO05D000091 7.9e-13 77.8 87 49.4
Carub.0003s3418 Capsella rubella HOM05D002350 ORTHO05D000091 1.4e-12 77.0 119 39.5
Glyma.01G008700 Glycine max HOM05D002350 ORTHO05D000091 1.4e-12 77.0 93 44.1
VMungo0464G0493 Vigna mungo HOM05D002350 ORTHO05D000091 1.4e-12 77.0 92 43.5
Haze_25814 Corylus avellana HOM05D002350 ORTHO05D000091 1.8e-12 76.6 92 44.6
Gohir.D07G008700 Gossypium hirsutum HOM05D002350 ORTHO05D000091 2.3e-12 76.3 88 44.3
Potri.007G081300 Populus trichocarpa HOM05D002350 ORTHO05D000091 2.3e-12 76.3 119 39.5
TAR624G0594 Trochodendron aralioides HOM05D002350 ORTHO05D000091 2.3e-12 76.3 89 44.9
Medtr6g088660 Medicago truncatula HOM05D002350 ORTHO05D000091 3.0e-12 75.9 90 43.3
arahy.Tifrunner.gnm1.ann1.2RFB5Y Arachis hypogaea HOM05D002350 ORTHO05D000091 3.9e-12 75.5 85 44.7
arahy.Tifrunner.gnm1.ann1.7X0VYH Arachis hypogaea HOM05D002350 ORTHO05D000091 3.9e-12 75.5 85 44.7
arahy.Tifrunner.gnm1.ann1.HAD3B9 Arachis hypogaea HOM05D002350 ORTHO05D000091 5.1e-12 75.1 85 45.9
BraA10t43806Z Brassica rapa HOM05D002350 ORTHO05D000091 6.7e-12 74.7 85 45.9
arahy.Tifrunner.gnm1.ann1.9LQV7C Arachis hypogaea HOM05D002350 ORTHO05D000091 8.8e-12 74.3 85 45.9
Aqoxy7G03876 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 1.1e-11 73.9 89 43.8
AT2G19920 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 1.1e-11 73.9 93 45.2
A10p17220 Brassica napus HOM05D002350 ORTHO05D000091 1.1e-11 73.9 85 45.9
Eucgr.C03764 Eucalyptus grandis HOM05D002350 ORTHO05D000091 1.1e-11 73.9 84 46.4
Thecc.09G101800 Theobroma cacao HOM05D002350 ORTHO05D000091 2.5e-11 72.8 89 44.9
TAR624G0664 Trochodendron aralioides HOM05D002350 ORTHO05D000091 2.5e-11 72.8 89 42.7
Thhalv10001896m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 3.3e-11 72.4 85 44.7
Sp3g33240 Schrenkiella parvula HOM05D002350 ORTHO05D000091 3.3e-11 72.4 85 44.7
Aa31LG8G16870 Aethionema arabicum HOM05D002350 ORTHO05D000091 4.3e-11 72.0 85 44.7
Duzib150G1289 Durio zibethinus HOM05D002350 ORTHO05D000091 4.3e-11 72.0 83 48.2
Oeu064188.1 Olea europaea HOM05D002350 ORTHO05D000091 4.3e-11 72.0 91 45.1
AL3G48290 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 5.7e-11 71.6 93 43.0
Thhalv10001897m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 5.7e-11 71.6 120 35.8
Lj2g0003052 Lotus japonicus HOM05D002350 ORTHO05D000091 5.7e-11 71.6 91 39.6
BcaB03g16779 Brassica carinata HOM05D002350 ORTHO05D000091 9.7e-11 70.9 85 43.5
BcaC06g36654 Brassica carinata HOM05D002350 ORTHO05D000091 9.7e-11 70.9 85 43.5
BcaC07g41231 Brassica carinata HOM05D002350 ORTHO05D000091 9.7e-11 70.9 90 42.2
A07p00780 Brassica napus HOM05D002350 ORTHO05D000091 9.7e-11 70.9 85 43.5
A09p59080 Brassica napus HOM05D002350 ORTHO05D000091 9.7e-11 70.9 90 42.2
C07p01790 Brassica napus HOM05D002350 ORTHO05D000091 9.7e-11 70.9 85 43.5
C08p42360 Brassica napus HOM05D002350 ORTHO05D000091 9.7e-11 70.9 90 42.2
BolC7t40582H Brassica oleracea HOM05D002350 ORTHO05D000091 9.7e-11 70.9 85 43.5
BraA07t27876Z Brassica rapa HOM05D002350 ORTHO05D000091 9.7e-11 70.9 85 43.5
BraA09t41291Z Brassica rapa HOM05D002350 ORTHO05D000091 9.7e-11 70.9 90 42.2
CARHR110370 Cardamine hirsuta HOM05D002350 ORTHO05D000091 9.7e-11 70.9 92 44.6
Duzib168G1106 Durio zibethinus HOM05D002350 ORTHO05D000091 9.7e-11 70.9 92 41.3
Psat1g046880 Pisum sativum HOM05D002350 ORTHO05D000091 9.7e-11 70.9 91 41.8
AL3G48270 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 1.3e-10 70.5 85 42.4
AL3G48310 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 1.7e-10 70.1 85 43.5
AT2G19910 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 1.7e-10 70.1 85 42.4
ClCG03G016200 Citrullus lanatus HOM05D002350 ORTHO05D000091 1.7e-10 70.1 91 47.3
Migut.N01382 Erythranthe guttata HOM05D002350 ORTHO05D000091 1.7e-10 70.1 87 39.1
GSVIVG01015313001 Vitis vinifera HOM05D002350 ORTHO05D000091 1.7e-10 70.1 87 46.0
CSS0048603 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 2.2e-10 69.7 89 41.6
A07p00750 Brassica napus HOM05D002350 ORTHO05D000091 2.8e-10 69.3 113 36.3
C07p01760 Brassica napus HOM05D002350 ORTHO05D000091 2.8e-10 69.3 120 37.5
BraA07t27873Z Brassica rapa HOM05D002350 ORTHO05D000091 2.8e-10 69.3 120 37.5
RcHm_v2.0_Chr2g0091721 Rosa chinensis HOM05D002350 ORTHO05D000091 2.8e-10 69.3 74 50.0
BcaC06g36656 Brassica carinata HOM05D002350 ORTHO05D000091 3.7e-10 68.9 120 37.5
BolC7t40580H Brassica oleracea HOM05D002350 ORTHO05D000091 3.7e-10 68.9 120 37.5
BraA07t27871Z Brassica rapa HOM05D002350 ORTHO05D000091 3.7e-10 68.9 138 37.0
Duzib168G2169 Durio zibethinus HOM05D002350 ORTHO05D000091 4.8e-10 68.6 89 38.2
BolC7t40573H Brassica oleracea HOM05D002350 ORTHO05D000091 6.3e-10 68.2 138 36.2
Lj4C391G5 Lonicera japonica HOM05D002350 ORTHO05D000091 6.3e-10 68.2 100 39.0
Sopen12g003370 Solanum pennellii HOM05D002350 ORTHO05D000091 6.3e-10 68.2 88 42.0
THA.LOC104808318 Tarenaya hassleriana HOM05D002350 ORTHO05D000091 6.3e-10 68.2 77 46.8
Gohir.A07G008300 Gossypium hirsutum HOM05D002350 ORTHO05D000091 8.2e-10 67.8 88 40.9
BcaB08g34892 Brassica carinata HOM05D002350 ORTHO05D000091 1.1e-09 67.4 90 40.0
BcaC06g36662 Brassica carinata HOM05D002350 ORTHO05D000091 1.4e-09 67.0 85 44.7
CANSAT56G4254 Cannabis sativa HOM05D002350 ORTHO05D000091 1.4e-09 67.0 91 45.1
SEGI_05646 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 1.4e-09 67.0 85 45.9
SEGI_17992 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 1.4e-09 67.0 85 45.9
BcaB03g16778 Brassica carinata HOM05D002350 ORTHO05D000091 1.8e-09 66.6 85 41.2
Dinv41662 Davidia involucrata HOM05D002350 ORTHO05D000091 1.8e-09 66.6 82 42.7
Sc08g0007950 Simmondsia chinensis HOM05D002350 ORTHO05D000091 1.8e-09 66.6 89 40.4
Nitab4.5_0011131g0010 Nicotiana tabacum HOM05D002350 ORTHO05D000091 2.4e-09 66.2 88 40.9
ATR0705G139 Amborella trichopoda HOM05D002350 ORTHO05D000091 3.1e-09 65.9 86 44.2
CAN.G1642.9 Capsicum annuum HOM05D002350 ORTHO05D000091 5.3e-09 65.1 89 39.3
Lj4C392G1 Lonicera japonica HOM05D002350 ORTHO05D000091 5.3e-09 65.1 82 45.1
Nitab4.5_0000566g0160 Nicotiana tabacum HOM05D002350 ORTHO05D000091 5.3e-09 65.1 88 39.8
QL02p042039 Quercus lobata HOM05D002350 ORTHO05D000091 5.3e-09 65.1 121 34.7
Sabra06G0136400 Salix brachista HOM05D002350 ORTHO05D000091 5.3e-09 65.1 135 35.6
SGA_v2.0_scaffold501G52502 Striga asiatica HOM05D002350 ORTHO05D000091 6.9e-09 64.7 89 39.3
AT2G19930 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 9.1e-09 64.3 85 40.0
ECA236G2339 Erigeron canadensis HOM05D002350 ORTHO05D000091 1.2e-08 63.9 101 38.6
Cc06_g10350 Coffea canephora HOM05D002350 ORTHO05D000091 1.5e-08 63.5 89 41.6
Carub.0003s3417 Capsella rubella HOM05D002350 ORTHO05D000091 2.0e-08 63.2 85 40.0
Actinidia32657 Actinidia chinensis HOM05D002350 ORTHO05D000091 2.6e-08 62.8 82 41.5
Ca_25564_v3 Cicer arietinum L. HOM05D002350 ORTHO05D000091 2.6e-08 62.8 62 48.4
SalBow5G3880 Salvia bowleyana HOM05D002350 ORTHO05D000091 2.6e-08 62.8 92 39.1
PGSC0003DMG402000361 Solanum tuberosum HOM05D002350 ORTHO05D000091 3.4e-08 62.4 88 38.6
Manes.16G110000 Manihot esculenta HOM05D002350 ORTHO05D000091 4.5e-08 62.0 82 45.1
Lsat_1_v5_gn_8_96860 Lactuca sativa HOM05D002350 ORTHO05D000091 7.7e-08 61.2 86 40.7
PSO832G0190 Papaver somniferum HOM05D002350 ORTHO05D000091 1.3e-07 60.5 106 34.0
Rhsim03G0237500 Rhododendron simsii HOM05D002350 ORTHO05D000091 1.3e-07 60.5 90 41.1
Sabra06G0125300 Salix brachista HOM05D002350 ORTHO05D000091 1.7e-07 60.1 85 43.5
MSTRG.10607 Avicennia marina HOM05D002350 ORTHO05D000091 2.2e-07 59.7 74 39.2
EL10Ac8g18397 Beta vulgaris HOM05D002350 ORTHO05D000091 2.2e-07 59.7 86 38.4
MBI04_g30106_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 3.8e-07 58.9 78 41.0
PSO210G7085 Papaver somniferum HOM05D002350 ORTHO05D000091 3.8e-07 58.9 83 37.3
PSO210G2001 Papaver somniferum HOM05D002350 ORTHO05D000091 5.0e-07 58.5 83 36.1
Cpa.g.sc40.69 Carica papaya HOM05D002350 ORTHO05D000091 1.1e-06 57.4 85 37.6
BcaB03g16780 Brassica carinata HOM05D002350 ORTHO05D000091 1.4e-06 57.0 83 41.0
HanXRQChr16g0507611 Helianthus annuus HOM05D002350 ORTHO05D000091 1.4e-06 57.0 101 37.6
Cc06_g10360 Coffea canephora HOM05D002350 ORTHO05D000091 3.2e-06 55.8 88 37.5


User provided reference genes

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