Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 3.7e-213 744.6 366 100.0
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 4.6e-163 578.2 362 80.4
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 1.0e-159 567.0 364 78.8
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 3.4e-142 508.8 363 73.3
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 4.9e-141 505.0 364 72.8
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 3.9e-138 495.4 362 70.4
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.9e-138 495.4 362 70.4
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 6.6e-138 494.6 365 70.7
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.5e-137 493.4 392 66.6
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.5e-137 493.4 392 66.6
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.7e-133 479.9 393 65.4
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 5.8e-126 454.9 360 65.0
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 7.1e-124 448.0 367 64.3
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 3.9e-122 442.2 364 65.1
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 1.9e-121 439.9 367 64.3
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 4.3e-121 438.7 367 64.3
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.8e-119 433.3 362 64.1
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 4.0e-119 432.2 367 61.9
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.7e-117 426.8 366 62.0
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 7.1e-116 421.4 361 60.1
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.1e-115 419.9 361 60.1
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 3.9e-114 415.6 367 62.1
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 6.7e-114 414.8 366 59.8
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 8.7e-114 414.5 357 63.6
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 4.3e-113 412.1 366 60.7
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 9.6e-113 411.0 362 59.4
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 9.6e-113 411.0 363 62.3
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 2.1e-112 409.8 372 59.7
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 2.8e-112 409.5 365 59.7
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 6.2e-112 408.3 362 62.4
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 4.0e-111 405.6 362 60.5
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 1.7e-109 400.2 366 57.9
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 2.9e-109 399.4 380 58.2
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 2.9e-109 399.4 380 58.2
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 1.4e-108 397.1 372 55.6
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.2e-107 394.0 364 59.3
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.6e-107 393.7 379 56.5
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.1e-107 393.3 379 57.3
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.0e-106 391.0 343 58.0
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 1.1e-105 387.5 360 58.6
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.3e-105 386.0 366 58.2
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.3e-105 386.0 366 58.2
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 1.6e-104 383.6 359 59.1
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 2.1e-104 383.3 368 58.4
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 1.5e-102 377.1 361 58.7
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 7.6e-102 374.8 364 58.2
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 2.9e-101 372.9 366 54.4
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 1.1e-100 370.9 360 56.1
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 3.2e-100 369.4 322 61.8
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 5.5e-100 368.6 362 56.1
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 5.5e-100 368.6 373 53.9
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 4.6e-99 365.5 360 55.8
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 5.1e-98 362.1 366 56.6
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 9.7e-97 357.8 355 53.8
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.6e-96 357.1 360 54.7
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 2.8e-96 356.3 356 53.9
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 6.3e-96 355.1 363 54.8
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.4e-95 354.0 363 52.9
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 1.4e-95 354.0 368 53.3
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 2.4e-95 353.2 354 54.0
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 3.1e-95 352.8 360 55.0
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 1.2e-94 350.9 360 54.2
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 3.4e-94 349.4 363 55.4
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 3.4e-94 349.4 367 52.9
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 2.9e-93 346.3 358 54.2
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 5.0e-93 345.5 363 54.5
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 6.5e-93 345.1 306 58.8
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 6.5e-93 345.1 363 52.1
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 1.4e-92 344.0 361 55.4
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.5e-92 343.2 361 53.7
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 4.2e-92 342.4 356 53.7
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 1.2e-91 340.9 370 52.7
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.2e-91 340.9 377 51.2
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.6e-91 340.5 385 51.7
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 2.1e-91 340.1 378 52.9
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 2.1e-91 340.1 356 53.4
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.0e-90 337.8 362 51.9
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.4e-90 337.4 365 50.4
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 1.4e-90 337.4 378 50.0
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.4e-90 337.4 380 52.1
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 2.3e-90 336.7 369 52.3
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 3.0e-90 336.3 360 53.3
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.9e-90 335.9 365 52.9
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 5.1e-90 335.5 361 52.4
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 6.7e-90 335.1 368 50.8
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 7.4e-89 331.6 281 61.6
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 3.7e-88 329.3 358 51.7
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 6.3e-88 328.6 368 51.4
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 6.3e-88 328.6 364 51.6
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 1.1e-87 327.8 356 51.4
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 1.4e-87 327.4 356 51.1
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.4e-87 327.4 268 61.2
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.8e-87 327.0 360 51.1
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 3.1e-87 326.2 358 51.1
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 4.1e-87 325.9 356 51.1
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 5.3e-87 325.5 356 52.2
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 9.1e-87 324.7 363 50.1
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 1.5e-86 323.9 356 51.7
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 2.0e-86 323.6 288 58.0
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.7e-85 320.5 362 51.7
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.7e-85 320.5 367 54.0
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 2.9e-85 319.7 356 50.3
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 2.9e-85 319.7 366 49.7
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 2.9e-85 319.7 286 57.0
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 2.9e-85 319.7 361 48.2
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 3.8e-85 319.3 368 47.6
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 5.0e-85 318.9 361 50.1
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 1.1e-84 317.8 361 48.2
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 2.5e-84 316.6 356 50.6
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 2.5e-84 316.6 271 57.9
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 5.5e-84 315.5 269 59.9
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 7.2e-84 315.1 359 49.3
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 9.4e-84 314.7 357 50.4
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 2.1e-83 313.5 362 49.7
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 3.6e-83 312.8 335 54.0
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 3.0e-82 309.7 280 54.3
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 1.5e-81 307.4 358 50.6
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 3.3e-81 306.2 374 47.1
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 3.3e-81 306.2 356 48.3
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 5.7e-81 305.4 360 48.9
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.3e-80 304.3 361 49.3
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.8e-80 303.1 315 52.7
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 4.5e-78 295.8 364 48.1
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 1.6e-75 287.3 363 46.6
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.6e-75 286.2 375 45.1
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.3e-74 283.5 306 51.3
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.4e-71 274.2 315 49.2
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.4e-71 274.2 362 48.1
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 1.2e-70 271.2 364 46.4
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.3e-69 267.7 320 48.8
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 2.5e-68 263.5 270 51.1
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 2.5e-68 263.5 270 51.1
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 7.2e-68 261.9 270 51.1
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 2.7e-67 260.0 315 48.6
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.8e-66 257.3 229 56.8
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.3e-66 256.9 319 50.2
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 2.8e-64 250.0 378 42.3
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 4.8e-64 249.2 268 50.0
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 5.4e-63 245.7 256 52.3
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 2.9e-61 240.0 315 45.1
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 2.9e-61 240.0 430 36.5
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.8e-61 239.6 359 42.3
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 1.8e-58 230.7 297 43.8
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.4e-55 221.1 215 56.3
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 5.4e-55 219.2 316 44.9
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 1.0e-53 214.9 262 46.2
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 4.0e-50 203.0 243 46.5
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.0e-49 200.7 326 38.0
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.6e-49 200.3 321 39.6
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 5.4e-47 192.6 184 56.5
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.6e-43 181.0 248 39.9
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 3.1e-42 176.8 147 61.2
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 1.2e-38 164.9 448 27.7
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 1.6e-38 164.5 193 49.7
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 1.6e-38 164.5 220 44.1
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 8.1e-35 152.1 136 52.2
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 1.1e-34 151.8 162 54.3
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 5.4e-31 139.4 281 33.1
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.7e-29 134.4 172 43.0
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 5.1e-29 132.9 161 47.8
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 7.3e-28 129.0 203 43.3
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 7.3e-28 129.0 213 41.8
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 5.2e-26 122.9 156 50.6
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 3.8e-24 116.7 156 42.9
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 4.6e-22 109.8 75 61.3
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 3.3e-20 103.6 132 40.9
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 3.3e-20 103.6 110 46.4
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 1.2e-19 101.7 355 27.3
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.4e-18 98.2 101 55.4
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 3.8e-16 90.1 101 45.5
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 3.8e-16 90.1 116 40.5
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 8.4e-16 89.0 83 59.0
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 1.4e-15 88.2 78 53.8
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 1.2e-14 85.1 153 32.0
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 7.3e-12 75.9 103 39.8
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 2.1e-11 74.3 42 81.0
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 4.0e-10 70.1 113 35.4
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 1.2e-09 68.6 55 56.4
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.5e-09 66.6 133 41.4
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 5.8e-09 66.2 56 53.6
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.7e-08 64.7 47 68.1
Cfa022807 Carpinus fangiana HOM05D003781 ORTHO05D004299 2.2e-08 64.3 280 25.7
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 6.4e-08 62.8 43 72.1
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 1.2e-06 58.5 49 55.1


User provided reference genes

Program Settings