Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 0.0e+00 1706.0 915 100.0
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 0.0e+00 1248.8 919 73.7
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1225.3 927 71.4
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1209.5 927 70.7
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1174.8 916 70.0
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1169.1 916 69.5
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1144.8 917 67.8
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1140.6 915 68.0
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 0.0e+00 1110.9 973 64.2
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 0.0e+00 1108.2 877 68.9
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1079.3 930 65.3
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.7e-297 1025.4 909 61.9
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 6.0e-289 997.7 909 60.2
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.7e-283 979.5 905 59.1
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.5e-279 966.5 912 58.1
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 2.8e-278 962.2 905 58.2
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 2.5e-271 939.1 907 56.9
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 6.3e-270 934.5 917 57.1
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.2e-268 930.2 917 57.0
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 2.0e-268 929.5 890 59.0
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 4.2e-266 921.8 921 57.1
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 7.2e-266 921.0 913 57.7
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 3.7e-262 908.7 919 56.8
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 6.3e-262 907.9 906 55.0
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 1.8e-261 906.4 906 55.1
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.1e-261 905.6 906 55.1
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 1.3e-259 900.2 907 55.3
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 8.5e-259 897.5 911 54.8
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 1.4e-256 890.2 920 56.3
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.8e-256 889.8 924 55.2
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 1.1e-250 870.5 698 67.0
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.7e-249 865.9 904 54.1
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 6.1e-249 864.8 777 61.4
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.4e-248 863.6 959 52.6
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 5.2e-248 861.7 918 53.1
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 2.2e-246 856.3 922 54.2
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 6.3e-246 854.7 882 57.3
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 2.4e-245 852.8 915 53.1
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 1.3e-243 847.0 926 51.9
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 2.2e-243 846.3 963 52.3
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 2.1e-241 839.7 913 52.6
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 4.7e-241 838.6 916 51.6
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 6.1e-241 838.2 770 59.1
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 1.4e-240 837.0 906 52.6
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 6.7e-240 834.7 917 50.5
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 9.4e-234 814.3 918 50.1
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.2e-233 813.9 918 49.5
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 6.1e-233 811.6 897 50.8
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 3.0e-232 809.3 923 50.5
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.2e-231 807.4 918 50.9
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 3.4e-231 805.8 908 50.7
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 5.7e-231 805.1 916 50.8
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 6.3e-230 801.6 918 50.3
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 9.1e-229 797.7 897 51.6
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 1.3e-227 793.9 901 49.3
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 1.2e-225 787.3 921 48.9
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 1.4e-224 783.9 910 48.8
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 4.0e-224 782.3 908 48.3
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 1.3e-222 777.3 762 56.3
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.7e-219 766.9 723 56.6
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 6.8e-216 755.0 921 47.0
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.8e-213 746.9 906 46.5
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 2.4e-213 746.5 909 46.9
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 7.0e-213 745.0 963 45.4
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 1.2e-212 744.2 928 46.8
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.3e-211 740.7 914 47.2
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 2.5e-210 736.5 906 46.2
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 5.6e-210 735.3 931 47.0
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.1e-208 729.6 917 47.3
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 1.5e-207 727.2 724 53.7
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 4.4e-207 725.7 915 45.9
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.7e-206 723.8 929 46.0
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 2.9e-206 723.0 763 52.8
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 2.0e-204 716.8 920 46.1
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 2.7e-204 716.5 908 46.1
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 3.5e-204 716.1 918 46.8
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 1.7e-203 713.8 661 60.1
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 2.3e-203 713.4 955 44.9
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.4e-200 704.1 914 45.5
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 6.4e-198 695.3 914 44.4
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 4.6e-196 689.1 910 45.5
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 6.0e-196 688.7 908 45.2
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.7e-195 687.2 931 44.6
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 2.3e-195 686.8 922 44.6
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 1.1e-194 684.5 908 44.6
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 2.1e-193 680.2 908 44.4
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 2.8e-193 679.9 907 44.2
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 3.1e-192 676.4 732 52.5
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 4.0e-192 676.0 922 44.8
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 5.2e-192 675.6 909 43.9
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.3e-190 671.0 932 44.1
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 6.4e-190 668.7 891 45.6
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 4.3e-186 656.0 917 43.6
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.2e-183 647.9 903 43.3
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 2.6e-183 646.7 869 45.9
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 5.8e-183 645.6 957 41.9
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 3.8e-182 642.9 927 42.8
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 8.4e-182 641.7 920 44.5
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 8.4e-182 641.7 679 53.2
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 7.6e-175 618.6 857 44.2
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 2.4e-173 613.6 929 42.2
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 6.7e-171 605.5 664 52.3
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 6.1e-148 529.3 714 46.1
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 1.2e-140 505.0 729 41.8
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 3.7e-137 493.4 588 49.8
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 2.4e-136 490.7 943 38.3
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 2.6e-135 487.3 825 38.4
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 5.0e-134 483.0 673 42.8
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 2.1e-132 477.6 910 36.2
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 8.8e-131 472.2 921 34.3
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 5.3e-128 463.0 816 37.7
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 4.7e-108 396.7 734 36.8
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.3e-107 394.4 588 40.6
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.3e-102 378.6 254 77.2
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.1e-101 375.6 781 35.6
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 2.2e-89 334.7 235 74.5
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.9e-86 323.9 236 72.5
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 7.3e-85 319.7 635 34.0
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 3.1e-83 314.3 860 31.0
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 7.5e-82 309.7 965 28.4
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 7.5e-82 309.7 965 28.4
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.7e-81 308.5 394 47.2
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 2.9e-81 307.8 973 28.2
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.6e-79 300.4 232 65.9
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 4.4e-74 283.9 771 29.7
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 8.7e-70 269.6 194 70.1
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 4.3e-69 267.3 187 75.4
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 5.8e-66 256.9 209 63.2
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 4.9e-65 253.8 186 71.0
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 2.1e-63 248.4 555 31.0
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 8.1e-60 236.5 342 39.8
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.4e-59 235.7 376 39.9
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 2.7e-55 221.5 174 63.8
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 8.4e-49 199.9 236 45.8
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 1.6e-47 195.7 795 27.2
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 3.5e-47 194.5 267 44.2
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 7.9e-47 193.4 331 38.1
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 2.1e-44 185.3 215 47.9
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.1e-43 183.0 144 69.4
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 7.6e-42 176.8 179 51.4
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.0e-41 176.4 109 85.3
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 3.3e-37 161.4 218 39.4
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.8e-35 155.6 218 40.4
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 9.0e-35 153.3 143 57.3
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 2.0e-34 152.1 177 47.5
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.7e-34 150.2 165 49.7
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 2.5e-32 145.2 177 45.2
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.1e-31 142.1 214 41.1
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 5.3e-27 127.5 96 62.5
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 1.0e-25 123.2 76 82.9
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 2.2e-25 122.1 95 60.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 1.9e-24 119.0 102 62.7
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.1e-19 103.2 388 26.0
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.3e-19 100.9 109 49.5
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 7.0e-19 100.5 81 61.7
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 1.0e-17 96.7 183 36.1
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 3.8e-17 94.7 276 31.2
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 5.0e-17 94.4 194 34.0
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 2.6e-13 82.0 189 34.9
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 4.1e-11 74.7 50 68.0
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 5.0e-09 67.8 170 32.9
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 1.2e-07 63.2 141 31.9
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.0e-06 60.1 88 38.6


User provided reference genes

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