Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 7.5e-186 653.7 320 100.0
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 2.7e-180 635.2 320 95.9
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 8.5e-174 613.6 320 91.9
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 3.2e-173 611.7 320 91.6
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.6e-172 609.4 316 92.4
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.6e-172 608.2 316 92.4
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 6.8e-163 577.4 318 86.8
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 5.7e-162 574.3 315 87.0
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 5.7e-162 574.3 316 86.7
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 1.7e-161 572.8 319 86.5
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 4.1e-160 568.2 320 85.0
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 9.2e-160 567.0 316 85.1
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 1.2e-159 566.6 318 84.6
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 2.0e-159 565.8 315 85.4
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 3.5e-159 565.1 315 85.4
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 3.5e-159 565.1 320 84.1
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 1.7e-158 562.8 315 85.1
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 2.3e-158 562.4 316 84.2
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 2.3e-158 562.4 317 83.6
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.0e-158 562.0 317 85.2
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 8.6e-158 560.5 315 84.1
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 1.1e-157 560.1 317 84.5
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 1.5e-157 559.7 304 87.8
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 1.9e-157 559.3 316 83.2
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 2.5e-157 558.9 315 84.8
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 2.5e-157 558.9 315 84.4
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 5.6e-157 557.8 309 85.4
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 9.5e-157 557.0 314 84.4
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 9.5e-157 557.0 315 81.9
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 9.5e-157 557.0 316 83.9
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 1.6e-156 556.2 315 83.8
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 1.6e-156 556.2 321 83.5
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 1.6e-156 556.2 316 81.6
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 2.1e-156 555.8 313 84.3
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 2.8e-156 555.4 315 82.9
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 4.7e-156 554.7 316 84.2
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 4.7e-156 554.7 317 83.3
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 8.0e-156 553.9 316 81.6
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 8.0e-156 553.9 315 86.7
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 1.0e-155 553.5 313 83.7
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 2.3e-155 552.4 317 83.0
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 2.3e-155 552.4 318 84.3
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 2.3e-155 552.4 310 85.5
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 3.1e-155 552.0 320 82.5
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 4.0e-155 551.6 315 83.5
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 6.8e-155 550.8 314 83.4
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 6.8e-155 550.8 315 83.2
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 8.9e-155 550.4 315 83.2
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 1.2e-154 550.1 319 82.8
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 1.5e-154 549.7 317 83.6
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 5.8e-154 547.7 301 86.7
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 7.5e-154 547.4 322 83.9
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 9.8e-154 547.0 310 82.9
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 1.3e-153 546.6 320 80.9
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 1.3e-153 546.6 312 82.1
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 2.2e-153 545.8 297 88.6
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 2.2e-153 545.8 314 82.2
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 4.9e-153 544.7 314 82.2
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 1.4e-152 543.1 300 86.3
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 4.1e-152 541.6 315 84.8
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 1.2e-151 540.0 311 83.0
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 1.2e-151 540.0 299 85.3
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 3.5e-151 538.5 311 83.0
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 3.5e-151 538.5 321 78.8
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 7.8e-151 537.3 311 80.1
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 1.7e-150 536.2 310 82.6
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 2.3e-150 535.8 311 82.3
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 5.0e-150 534.6 300 83.7
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 1.5e-149 533.1 300 84.0
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 2.5e-149 532.3 367 72.8
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 5.6e-149 531.2 305 82.6
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 4.7e-148 528.1 301 84.1
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 1.4e-147 526.6 299 84.3
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 2.3e-147 525.8 298 86.6
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.7e-145 518.5 310 78.4
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.9e-144 516.2 270 92.2
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 1.9e-144 516.2 298 81.9
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 8.6e-142 507.3 299 80.3
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 1.5e-141 506.5 284 85.9
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 1.9e-141 506.1 319 78.1
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 1.2e-140 503.4 309 78.6
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 1.2e-140 503.4 291 81.8
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 3.6e-140 501.9 315 76.8
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 7.6e-138 494.2 299 77.9
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 1.7e-137 493.0 318 72.0
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 3.8e-137 491.9 294 78.6
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 1.4e-136 490.0 313 73.8
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.8e-131 473.0 262 87.0
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 8.9e-131 470.7 262 86.6
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 1.2e-130 470.3 314 68.5
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.3e-129 466.8 262 86.6
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 1.7e-129 466.5 314 73.9
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 2.4e-128 462.6 286 78.3
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 1.2e-127 460.3 254 84.6
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 3.5e-127 458.8 265 82.3
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 6.2e-124 448.0 299 72.9
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 5.3e-123 444.9 254 83.1
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 1.5e-122 443.4 308 66.9
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 8.4e-113 411.0 299 70.9
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 9.3e-112 407.5 269 74.3
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 1.2e-111 407.1 287 65.2
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 4.6e-111 405.2 239 81.2
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 8.1e-108 394.4 258 74.8
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 4.0e-107 392.1 317 58.4
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 1.1e-104 384.0 218 83.0
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 1.2e-103 380.6 315 58.7
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.8e-94 350.1 210 80.0
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 5.1e-86 322.0 326 50.0
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 2.6e-85 319.7 306 51.6
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.1e-75 287.7 204 66.7
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 5.3e-75 285.4 170 81.2
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 7.0e-75 285.0 288 47.2
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 2.9e-73 279.6 299 49.8
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.1e-72 277.7 179 74.3
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 6.3e-68 261.9 170 75.3
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 7.0e-67 258.5 145 84.8
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.2e-65 253.4 165 73.9
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 7.0e-59 231.9 132 81.1
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 1.3e-57 227.6 184 62.5
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 4.0e-54 216.1 174 63.2
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 8.8e-54 214.9 119 83.2
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 1.7e-49 200.7 115 81.7
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 8.6e-49 198.4 132 71.2
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 1.2e-47 194.5 107 85.0
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 4.7e-47 192.6 104 86.5
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 4.1e-43 179.5 124 70.2
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 2.0e-37 160.6 172 52.9
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 4.9e-36 156.0 118 64.4
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 1.3e-33 147.9 105 66.7
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 5.0e-33 146.0 320 34.4
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 3.3e-32 143.3 326 35.0
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 9.5e-32 141.7 106 64.2
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 1.4e-30 137.9 95 73.7
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 1.3e-28 131.3 306 33.7
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 1.0e-25 121.7 71 81.7
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.3e-24 116.7 119 53.8
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 1.4e-19 101.3 69 69.6
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 4.1e-19 99.8 69 69.6
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 3.5e-18 96.7 95 51.6
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 1.5e-13 81.3 42 90.5
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 1.5e-13 81.3 42 90.5
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 2.0e-13 80.9 55 69.1
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 9.9e-13 78.6 291 27.5
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 2.2e-12 77.4 40 90.0
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 2.2e-12 77.4 309 26.5
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 2.2e-12 77.4 165 29.7
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 8.4e-12 75.5 283 27.2
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 1.1e-11 75.1 291 28.2
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 1.6e-10 71.2 291 25.8
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 2.1e-10 70.9 46 65.2
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 2.7e-10 70.5 307 25.4
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 3.5e-10 70.1 305 26.9
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 8.7e-09 65.5 212 28.8
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 8.7e-09 65.5 298 24.8
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 1.1e-08 65.1 212 26.4
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 1.9e-08 64.3 66 53.0
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.9e-08 64.3 284 24.6
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 2.5e-08 63.9 283 24.7
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 3.3e-08 63.5 208 26.4
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.3e-08 63.2 211 26.5
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.3e-08 63.2 211 26.5
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 5.6e-08 62.8 290 25.2
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.3e-08 62.4 217 27.2
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.6e-08 62.0 211 26.1
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.3e-07 61.6 212 26.9
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.3e-07 61.6 301 25.9
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 2.8e-07 60.5 121 34.7
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.6e-07 60.1 212 26.9
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.6e-07 60.1 212 26.9
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 4.8e-07 59.7 206 26.7
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 4.8e-07 59.7 215 27.0
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 1.1e-06 58.5 78 43.6
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.4e-06 58.2 305 23.0
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.8e-06 57.8 130 31.5
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.8e-06 57.8 134 30.6
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 3.1e-06 57.0 198 25.8


User provided reference genes

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