Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 3.6e-76 288.1 141 100.0
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 3.9e-70 268.1 139 93.5
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 2.5e-69 265.4 140 90.7
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 5.6e-69 264.2 137 92.7
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.1e-68 260.4 137 90.5
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 2.0e-66 255.8 137 89.8
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.0e-66 255.8 137 89.8
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 9.9e-66 253.4 137 86.9
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.9e-65 251.9 137 87.6
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.1e-64 247.3 130 90.8
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 3.3e-61 238.4 132 87.9
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.8e-59 232.6 138 80.4
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 4.0e-59 231.5 138 80.4
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 7.6e-58 227.3 132 81.8
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 2.2e-57 225.7 135 80.7
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 4.9e-57 224.6 123 85.4
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.1e-56 223.4 135 80.0
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 5.4e-56 221.1 135 77.0
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 9.3e-56 220.3 133 78.9
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 9.3e-56 220.3 137 77.4
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.6e-55 219.5 126 82.5
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 1.6e-55 219.5 124 86.3
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 3.5e-55 218.4 132 80.3
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 3.5e-55 218.4 137 77.4
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 6.0e-55 217.6 135 77.0
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 7.9e-55 217.2 126 81.0
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.3e-54 216.5 126 81.7
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 1.3e-54 216.5 132 79.5
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 2.3e-54 215.7 132 79.5
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 3.0e-54 215.3 129 79.8
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 5.1e-54 214.5 126 80.2
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 8.7e-54 213.8 132 78.8
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 1.5e-53 213.0 129 78.3
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 2.5e-53 212.2 136 75.0
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 2.5e-53 212.2 126 78.6
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 4.3e-53 211.5 133 76.7
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 7.4e-53 210.7 136 76.5
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 7.4e-53 210.7 129 76.0
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 7.4e-53 210.7 126 78.6
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 9.6e-53 210.3 122 83.6
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 9.6e-53 210.3 130 79.2
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 1.6e-52 209.5 137 73.0
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.1e-52 209.1 126 79.4
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 4.8e-52 208.0 131 74.0
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 8.1e-52 207.2 126 80.2
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.4e-51 206.5 126 77.8
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.4e-51 205.7 126 79.4
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 3.1e-51 205.3 121 78.5
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 6.9e-51 204.1 121 77.7
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 6.9e-51 204.1 130 75.4
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 9.0e-51 203.8 126 75.4
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.5e-50 203.0 129 75.2
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.6e-50 202.2 126 78.6
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 3.4e-50 201.8 126 79.4
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 4.5e-50 201.4 127 74.8
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 5.8e-50 201.1 129 74.4
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 5.8e-50 201.1 123 74.8
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.7e-49 199.5 119 78.2
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 2.2e-49 199.1 127 75.6
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.2e-49 199.1 122 75.4
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 3.8e-49 198.4 120 79.2
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 4.9e-49 198.0 135 70.4
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 4.9e-49 198.0 130 70.0
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 8.4e-49 197.2 120 77.5
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 8.4e-49 197.2 126 75.4
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 8.4e-49 197.2 127 74.8
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 8.4e-49 197.2 127 75.6
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 1.9e-48 196.1 119 79.0
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 3.2e-48 195.3 131 67.2
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 3.2e-48 195.3 127 74.0
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 7.1e-48 194.1 127 71.7
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 9.3e-48 193.7 119 74.8
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 1.2e-47 193.4 120 75.8
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 1.2e-47 193.4 127 74.8
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 1.6e-47 193.0 131 67.2
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.7e-47 192.2 130 70.0
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 2.7e-47 192.2 131 66.4
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.6e-47 191.4 139 66.2
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.0e-46 190.3 122 75.4
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 1.0e-46 190.3 124 71.0
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.3e-46 189.9 130 71.5
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.3e-46 189.9 127 71.7
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.8e-46 189.5 128 68.8
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 5.1e-46 188.0 133 62.4
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 8.7e-46 187.2 130 65.4
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 8.7e-46 187.2 127 70.9
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.9e-45 186.0 120 76.7
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 7.4e-45 184.1 114 76.3
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 2.1e-44 182.6 126 64.3
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 2.1e-44 182.6 120 72.5
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 2.8e-44 182.2 128 70.3
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 3.7e-44 181.8 127 70.1
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 4.8e-44 181.4 124 70.2
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 4.8e-44 181.4 120 69.2
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 8.1e-44 180.6 123 69.9
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 1.1e-43 180.3 124 69.4
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.1e-43 180.3 120 75.0
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.4e-43 179.9 126 64.3
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 3.1e-43 178.7 124 71.8
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 4.0e-43 178.3 124 70.2
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 1.2e-42 176.8 122 72.1
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.2e-42 176.8 126 63.5
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 2.0e-42 176.0 123 68.3
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.6e-42 175.6 126 64.3
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 3.4e-42 175.3 124 67.7
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 5.8e-42 174.5 118 69.5
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 7.6e-42 174.1 124 70.2
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.0e-41 173.7 124 68.5
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.0e-41 173.7 128 65.6
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.7e-41 172.9 135 60.0
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.2e-41 172.6 124 70.2
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 3.8e-41 171.8 114 73.7
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 6.5e-41 171.0 126 61.9
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.1e-40 170.2 127 63.8
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.9e-40 169.5 127 63.0
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 2.5e-40 169.1 127 63.0
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 3.2e-40 168.7 128 60.9
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 3.2e-40 168.7 126 61.1
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 3.2e-40 168.7 126 61.1
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 3.2e-40 168.7 126 61.1
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 4.2e-40 168.3 128 60.2
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 5.5e-40 167.9 119 64.7
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 7.1e-40 167.5 116 71.6
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 7.1e-40 167.5 119 66.4
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.3e-40 167.2 105 78.1
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.6e-39 166.4 110 69.1
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 1.6e-39 166.4 125 63.2
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 2.7e-39 165.6 129 58.9
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 2.7e-39 165.6 129 58.9
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 2.7e-39 165.6 129 59.7
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 1.0e-38 163.7 128 68.0
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 1.3e-38 163.3 129 58.9
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.8e-38 162.9 127 59.8
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.8e-38 162.9 109 73.4
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 3.0e-38 162.2 128 60.2
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 3.0e-38 162.2 128 60.2
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 3.9e-38 161.8 120 63.3
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 3.9e-38 161.8 120 63.3
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 3.9e-38 161.8 119 63.0
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 5.1e-38 161.4 121 62.0
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 8.7e-38 160.6 132 59.8
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 4.3e-37 158.3 132 59.1
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 5.7e-37 157.9 121 63.6
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 7.4e-37 157.5 121 62.0
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 9.6e-37 157.1 132 57.6
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 9.6e-37 157.1 133 59.4
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 8.2e-36 154.1 119 59.7
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 1.1e-35 153.7 117 61.5
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.4e-35 152.5 121 61.2
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 4.1e-35 151.8 119 62.2
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 5.3e-35 151.4 125 56.0
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 2.0e-34 149.4 135 57.8
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 4.5e-34 148.3 116 57.8
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.9e-33 145.6 99 70.7
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.7e-31 139.0 119 52.9
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 6.1e-31 137.9 124 56.5
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.3e-28 130.2 123 51.2
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 6.5e-25 117.9 103 57.3
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 7.2e-24 114.4 58 86.2
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 3.3e-21 105.5 65 78.5
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 9.7e-21 104.0 72 66.7
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 1.4e-19 100.1 62 79.0
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 1.4e-19 100.1 64 78.1
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 3.1e-19 99.0 63 76.2
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.0e-18 96.3 64 71.9
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.0e-18 96.3 64 71.9
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 2.6e-18 95.9 54 75.9
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.4e-18 95.5 81 66.7
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 4.2e-16 88.6 112 38.4
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.5e-16 88.2 53 75.5
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 9.4e-16 87.4 66 53.0
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.2e-15 87.0 64 67.2
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 4.4e-13 78.6 51 78.4
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.2e-12 76.3 118 37.3
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 3.7e-12 75.5 68 57.4
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 2.4e-11 72.8 59 61.0
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.0e-09 67.4 64 50.0
arahy.Tifrunner.gnm1.ann1.P0I4D3 Arachis hypogaea HOM05D003887 ORTHO05D004523 1.0e-06 57.4 35 80.0
HanXRQChr02g0053341 Helianthus annuus HOM05D003887 ORTHO05D048295 3.0e-06 55.8 35 68.6
Nitab4.5_0006280g0090 Nicotiana tabacum HOM05D003887 ORTHO05D048295 4.0e-06 55.5 43 58.1


User provided reference genes

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