Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G090700 Prunus persica HOM05D000778 ORTHO05D000601 2.6e-230 802.0 484 100.0
MD12G1044500 Malus domestica HOM05D000778 ORTHO05D000601 4.3e-145 518.8 487 66.7
MD14G1043400 Malus domestica HOM05D000778 ORTHO05D000601 1.7e-141 506.9 487 65.3
RcHm_v2.0_Chr3g0477191 Rosa chinensis HOM05D000778 ORTHO05D000601 2.1e-139 500.0 487 63.2
FvH4_6g20850 Fragaria vesca HOM05D000778 ORTHO05D000601 8.2e-128 461.5 491 59.7
FAN14G3360 Fragaria x ananassa HOM05D000778 ORTHO05D000601 1.8e-127 460.3 491 59.5
FAN05G2927 Fragaria x ananassa HOM05D000778 ORTHO05D000601 1.6e-123 447.2 491 58.2
FAN05G1121 Fragaria x ananassa HOM05D000778 ORTHO05D000601 1.0e-122 444.5 491 58.0
FAN09G3334 Fragaria x ananassa HOM05D000778 ORTHO05D000601 2.3e-122 443.4 491 58.7
FAN02G0507 Fragaria x ananassa HOM05D000778 ORTHO05D000601 3.3e-113 412.9 494 55.1
Cfa020080 Carpinus fangiana HOM05D000778 ORTHO05D000601 1.5e-89 334.3 518 45.0
QL07p026771 Quercus lobata HOM05D000778 ORTHO05D000601 2.0e-86 323.9 527 44.6
Haze_20112 Corylus avellana HOM05D000778 ORTHO05D000601 2.0e-81 307.4 498 45.2
Dinv11888 Davidia involucrata HOM05D000778 ORTHO05D000601 5.1e-77 292.7 456 46.3
TWI53G1056 Tripterygium wilfordii HOM05D000778 ORTHO05D000601 1.1e-74 285.0 493 42.6
Ciclev10012108m.g Citrus clementina HOM05D000778 ORTHO05D000601 1.4e-71 274.6 497 41.6
TWI74G0228 Tripterygium wilfordii HOM05D000778 ORTHO05D000601 1.9e-71 274.2 498 41.6
TAR623G1775 Trochodendron aralioides HOM05D000778 ORTHO05D000601 1.9e-71 274.2 498 43.8
CANSAT64G0079 Cannabis sativa HOM05D000778 ORTHO05D000601 3.2e-71 273.5 496 41.9
CSS0044259 Camellia sinensis var. sinensis HOM05D000778 ORTHO05D000601 1.6e-70 271.2 498 43.2
CiPaw.10G019900 Carya illinoinensis HOM05D000778 ORTHO05D000601 8.6e-69 265.4 519 38.9
Duzib128G1870 Durio zibethinus HOM05D000778 ORTHO05D000601 7.3e-68 262.3 496 40.5
Atru.chr8.1297 Acer truncatum HOM05D000778 ORTHO05D000601 2.8e-67 260.4 497 40.4
Cpa.g.sc222.23 Carica papaya HOM05D000778 ORTHO05D000601 2.9e-64 250.4 503 41.0
ClCG10G018060 Citrullus lanatus HOM05D000778 ORTHO05D000601 3.0e-61 240.4 492 42.1
Manes.09G042700 Manihot esculenta HOM05D000778 ORTHO05D000601 8.1e-59 232.3 500 39.8
Manes.08G036400 Manihot esculenta HOM05D000778 ORTHO05D000601 5.8e-57 226.1 489 38.4
Thecc.05G108900 Theobroma cacao HOM05D000778 ORTHO05D000601 1.7e-56 224.6 502 38.4
CiPaw.09G023300 Carya illinoinensis HOM05D000778 ORTHO05D000601 2.9e-56 223.8 394 44.9
Duzib093G1343 Durio zibethinus HOM05D000778 ORTHO05D000601 2.9e-56 223.8 495 37.4
Gohir.A01G199900 Gossypium hirsutum HOM05D000778 ORTHO05D000601 4.9e-56 223.0 493 37.9
Actinidia37771 Actinidia chinensis HOM05D000778 ORTHO05D000601 6.4e-56 222.6 494 38.9
Potri.016G066600 Populus trichocarpa HOM05D000778 ORTHO05D000601 2.1e-54 217.6 505 38.6
Lalb_Chr25g0287891 Lupinus albus HOM05D000778 ORTHO05D000601 6.6e-53 212.6 497 38.6
Sed0026206 Sechium edule HOM05D000778 ORTHO05D000601 9.6e-52 208.8 492 37.0
Hma1.2p1_0969F.1_g242590 Hydrangea macrophylla HOM05D000778 ORTHO05D000601 3.6e-51 206.8 509 38.5
Rhsim03G0062900 Rhododendron simsii HOM05D000778 ORTHO05D000601 1.1e-50 205.3 495 39.4
MELO3C009566.2 Cucumis melo HOM05D000778 ORTHO05D000601 1.8e-50 204.5 493 37.9
Nn6g34603 Nelumbo nucifera HOM05D000778 ORTHO05D000601 3.4e-49 200.3 501 38.7
Sed0001287 Sechium edule HOM05D000778 ORTHO05D000601 9.9e-49 198.7 495 36.0
Potri.006G200400 Populus trichocarpa HOM05D000778 ORTHO05D000601 5.4e-47 193.0 505 36.0
CsaV3_3G038240 Cucumis sativus L. HOM05D000778 ORTHO05D000601 7.1e-47 192.6 493 37.1
PSO384G4839 Papaver somniferum HOM05D000778 ORTHO05D000601 7.1e-47 192.6 410 38.8
vmacro07492 Vaccinium macrocarpon HOM05D000778 ORTHO05D000601 4.6e-46 189.9 500 38.0
COL.COLO4_29512 Corchorus olitorius HOM05D000778 ORTHO05D000601 2.3e-45 187.6 491 35.6
Gohir.D01G189900 Gossypium hirsutum HOM05D000778 ORTHO05D000601 3.0e-45 187.2 492 34.6
Glyma.10G084200 Glycine max HOM05D000778 ORTHO05D000601 2.5e-44 184.1 489 37.2
PSO339G2773 Papaver somniferum HOM05D000778 ORTHO05D000601 2.5e-44 184.1 410 38.0
PGR004G2624 Punica granatum HOM05D000778 ORTHO05D000601 2.5e-44 184.1 499 37.3
Aqoxy1G00588 Aquilegia oxysepala HOM05D000778 ORTHO05D000601 1.6e-43 181.4 468 35.9
Actinidia07950 Actinidia chinensis HOM05D000778 ORTHO05D000601 2.8e-43 180.6 450 37.3
Glyma.19G201500 Glycine max HOM05D000778 ORTHO05D000601 4.8e-43 179.9 492 35.6
MBI05_g28095_MAGBIO Magnolia biondii HOM05D000778 ORTHO05D000601 1.4e-42 178.3 457 37.6
Sabra06G0154300 Salix brachista HOM05D000778 ORTHO05D000601 4.0e-42 176.8 567 33.7
Phvul.007G266000 Phaseolus vulgaris HOM05D000778 ORTHO05D000601 9.0e-42 175.6 492 36.4
Gorai.002G233700 Gossypium raimondii HOM05D000778 ORTHO05D000601 2.0e-41 174.5 379 38.8
Oeu044681.1 Olea europaea HOM05D000778 ORTHO05D000601 5.8e-41 172.9 484 32.2
Glyma.02G192600 Glycine max HOM05D000778 ORTHO05D000601 9.9e-41 172.2 481 36.6
VMungo0720G0778 Vigna mungo HOM05D000778 ORTHO05D000601 3.8e-40 170.2 492 35.8
CAN.G911.9 Capsicum annuum HOM05D000778 ORTHO05D000601 1.1e-39 168.7 486 33.7
Sopen01g002820 Solanum pennellii HOM05D000778 ORTHO05D000601 1.4e-39 168.3 442 36.9
Sabra16G0068000 Salix brachista HOM05D000778 ORTHO05D000601 4.2e-39 166.8 499 35.3
PGSC0003DMG400021339 Solanum tuberosum HOM05D000778 ORTHO05D000601 5.5e-39 166.4 476 35.7
Duzib106G2033 Durio zibethinus HOM05D000778 ORTHO05D000601 7.1e-39 166.0 383 36.8
Medtr1g055085 Medicago truncatula HOM05D000778 ORTHO05D000601 9.3e-39 165.6 489 35.8
Solyc01g006830.3 Solanum lycopersicum HOM05D000778 ORTHO05D000601 3.5e-38 163.7 437 37.5
Hund14988 Selenicereus undatus HOM05D000778 ORTHO05D000601 6.0e-38 162.9 496 32.9
Nitab4.5_0010873g0010 Nicotiana tabacum HOM05D000778 ORTHO05D000601 1.3e-37 161.8 440 37.3
Nn2g14388 Nelumbo nucifera HOM05D000778 ORTHO05D000601 1.8e-37 161.4 498 33.9
Ca_11666_v3 Cicer arietinum L. HOM05D000778 ORTHO05D000601 9.6e-36 155.6 418 33.3
Lj5g0005651 Lotus japonicus HOM05D000778 ORTHO05D000601 4.8e-35 153.3 451 34.6
Phvul.001G197800 Phaseolus vulgaris HOM05D000778 ORTHO05D000601 1.1e-34 152.1 410 36.6
Medtr7g106750 Medicago truncatula HOM05D000778 ORTHO05D000601 2.4e-34 151.0 408 34.8
Nitab4.5_0000721g0190 Nicotiana tabacum HOM05D000778 ORTHO05D000601 6.9e-34 149.4 491 31.2
Oeu058124.1 Olea europaea HOM05D000778 ORTHO05D000601 2.6e-33 147.5 488 31.6
Sc22g0003130 Simmondsia chinensis HOM05D000778 ORTHO05D000601 2.6e-33 147.5 495 34.9
TPR.G34436 Trifolium pratense HOM05D000778 ORTHO05D000601 3.4e-33 147.1 434 35.3
DCAR_016912 Daucus carota HOM05D000778 ORTHO05D000601 1.7e-32 144.8 441 36.1
Nitab4.5_0000220g0130 Nicotiana tabacum HOM05D000778 ORTHO05D000601 4.9e-32 143.3 342 39.8
CAN.G674.21 Capsicum annuum HOM05D000778 ORTHO05D000601 8.4e-32 142.5 482 31.7
MSTRG.5916 Avicennia marina HOM05D000778 ORTHO05D000601 1.9e-31 141.4 448 34.2
Cc06_g06890 Coffea canephora HOM05D000778 ORTHO05D000601 1.9e-31 141.4 472 33.1
Lj1g0026823 Lotus japonicus HOM05D000778 ORTHO05D000601 2.7e-30 137.5 449 36.5
EL10Ac5g11820 Beta vulgaris HOM05D000778 ORTHO05D000601 7.9e-30 136.0 364 33.5
MSTRG.10417 Avicennia marina HOM05D000778 ORTHO05D000601 5.1e-29 133.3 459 29.0
THA.LOC104815201 Tarenaya hassleriana HOM05D000778 ORTHO05D000601 8.7e-29 132.5 498 31.3
Peaxi162Scf00203g00812 Petunia axillaris HOM05D000778 ORTHO05D000601 7.4e-28 129.4 448 31.7
Glyma.03G204200 Glycine max HOM05D000778 ORTHO05D000601 9.7e-28 129.0 298 39.3
VMungo1383G2391 Vigna mungo HOM05D000778 ORTHO05D000601 9.7e-28 129.0 488 31.8
Sopen10g032240 Solanum pennellii HOM05D000778 ORTHO05D000601 1.6e-27 128.3 425 32.0
Lalb_Chr20g0111241 Lupinus albus HOM05D000778 ORTHO05D000601 2.8e-27 127.5 495 33.1
Solyc10g081730.2 Solanum lycopersicum HOM05D000778 ORTHO05D000601 4.8e-27 126.7 424 31.8
arahy.Tifrunner.gnm1.ann1.HKB63Q Arachis hypogaea HOM05D000778 ORTHO05D000601 1.1e-26 125.6 489 32.3
PGSC0003DMG400028228 Solanum tuberosum HOM05D000778 ORTHO05D000601 1.8e-26 124.8 492 31.1
Nitab4.5_0001918g0080 Nicotiana tabacum HOM05D000778 ORTHO05D000601 3.1e-26 124.0 430 31.4
Hund10830 Selenicereus undatus HOM05D000778 ORTHO05D000601 3.1e-26 124.0 406 33.0
SalBow1G6066 Salvia bowleyana HOM05D000778 ORTHO05D000601 4.1e-26 123.6 368 34.0
arahy.Tifrunner.gnm1.ann1.MF78WR Arachis hypogaea HOM05D000778 ORTHO05D000601 5.3e-26 123.2 489 32.3
Peaxi162Scf00687g00057 Petunia axillaris HOM05D000778 ORTHO05D000601 6.9e-26 122.9 299 37.1
Ah.02g116100 Amaranthus hybridus HOM05D000778 ORTHO05D000601 2.0e-25 121.3 334 34.4
DCAR_009072 Daucus carota HOM05D000778 ORTHO05D000601 2.6e-25 120.9 489 30.3
ATR0697G012 Amborella trichopoda HOM05D000778 ORTHO05D000601 2.2e-24 117.9 470 30.6
MSTRG.26585 Avicennia marina HOM05D000778 ORTHO05D000601 2.9e-24 117.5 412 29.4
TPR.G21246 Trifolium pratense HOM05D000778 ORTHO05D000601 2.9e-24 117.5 431 32.3
DCAR_013455 Daucus carota HOM05D000778 ORTHO05D000601 1.1e-23 115.5 415 33.3
TAR369G0228 Trochodendron aralioides HOM05D000778 ORTHO05D000601 1.1e-23 115.5 208 44.7
DCAR_020683 Daucus carota HOM05D000778 ORTHO05D000601 3.2e-23 114.0 449 30.5
TAR369G0692 Trochodendron aralioides HOM05D000778 ORTHO05D000601 4.6e-22 110.2 254 36.2
Aa31LG5G21020 Aethionema arabicum HOM05D000778 ORTHO05D000601 6.1e-22 109.8 409 31.8
Migut.J00737 Erythranthe guttata HOM05D000778 ORTHO05D000601 3.0e-21 107.5 474 28.5
AUR62036333 Chenopodium quinoa HOM05D065301 ORTHO05D000601 3.9e-21 107.1 452 39.4
AUR62030689 Chenopodium quinoa HOM05D065301 ORTHO05D000601 1.5e-20 105.1 496 36.7
THA.LOC104803621 Tarenaya hassleriana HOM05D000778 ORTHO05D000601 1.5e-20 105.1 395 32.4
SGA_v2.0_scaffold41G15773 Striga asiatica HOM05D000778 ORTHO05D000601 2.0e-20 104.8 415 30.4
Actinidia03969 Actinidia chinensis HOM05D000778 ORTHO05D000601 2.5e-20 104.4 278 35.6
Psat6g118600 Pisum sativum HOM05D000778 ORTHO05D000601 3.3e-20 104.0 280 34.3
Carub.0004s1763 Capsella rubella HOM05D000778 ORTHO05D000601 1.4e-18 98.6 385 30.9
CARHR130130 Cardamine hirsuta HOM05D000778 ORTHO05D000601 1.4e-18 98.6 450 29.8
Psat3g028040 Pisum sativum HOM05D000778 ORTHO05D000601 3.1e-18 97.4 397 30.2
ECA238G1457 Erigeron canadensis HOM05D000778 ORTHO05D000601 2.0e-17 94.7 437 29.3
Eucgr.A02553 Eucalyptus grandis HOM05D000778 ORTHO05D000601 2.6e-17 94.4 452 27.2
SGA_v2.0_scaffold392G50679 Striga asiatica HOM05D000778 ORTHO05D000601 7.7e-17 92.8 359 31.5
BcaB02g09392 Brassica carinata HOM05D000778 ORTHO05D000601 2.9e-16 90.9 390 30.0
AL4G31980 Arabidopsis lyrata HOM05D000778 ORTHO05D000601 1.9e-15 88.2 393 30.0
Thhalv10016634m.g Eutrema salsugineum HOM05D000778 ORTHO05D000601 2.5e-15 87.8 431 29.7
AT2G35880 Arabidopsis thaliana HOM05D000778 ORTHO05D000601 7.2e-15 86.3 418 28.5
Os11g0571900 Oryza sativa ssp. japonica HOM05D000778 ORTHO05D000601 7.2e-15 86.3 342 29.8
CDE04G1512 Ceratophyllum demersum HOM05D000778 ORTHO05D000601 6.1e-14 83.2 454 28.6
BcaC02g11700 Brassica carinata HOM05D000778 ORTHO05D000601 7.9e-14 82.8 424 29.2
C04p12180 Brassica napus HOM05D000778 ORTHO05D000601 7.9e-14 82.8 424 29.2
Lj3g0016584 Lotus japonicus HOM05D000778 ORTHO05D000601 7.9e-14 82.8 337 31.8
ATR1120G030 Amborella trichopoda HOM05D000778 ORTHO05D000601 1.0e-13 82.4 443 28.2
Zm00001eb114200 Zea mays HOM05D000778 ORTHO05D000601 1.4e-13 82.0 395 28.9
BraA05t19934Z Brassica rapa HOM05D000778 ORTHO05D000601 3.0e-13 80.9 352 30.4
A05p09820 Brassica napus HOM05D000778 ORTHO05D000601 5.1e-13 80.1 358 29.9
Lsat_1_v5_gn_2_101800 Lactuca sativa HOM05D000778 ORTHO05D000601 5.1e-13 80.1 403 29.3
BcaB01g03873 Brassica carinata HOM05D000778 ORTHO05D000601 8.8e-13 79.3 313 31.9
Migut.L01849 Erythranthe guttata HOM05D000778 ORTHO05D000601 1.1e-12 79.0 437 30.2
HanXRQChr14g0453281 Helianthus annuus HOM05D000778 ORTHO05D000601 4.4e-12 77.0 393 27.0
BolC3t14711H Brassica oleracea HOM05D000778 ORTHO05D000601 5.7e-12 76.6 326 31.3
BraA03t11232Z Brassica rapa HOM05D000778 ORTHO05D000601 5.7e-12 76.6 340 30.3
Zm00001eb200130 Zea mays HOM05D000778 ORTHO05D000601 9.7e-12 75.9 374 27.8
Sp4g18130 Schrenkiella parvula HOM05D000778 ORTHO05D000601 1.3e-11 75.5 428 27.1
ECA248G0938 Erigeron canadensis HOM05D000778 ORTHO05D000601 2.2e-11 74.7 384 29.9
BcaC01g05696 Brassica carinata HOM05D000778 ORTHO05D000601 3.7e-11 73.9 389 29.3
HanXRQChr07g0196611 Helianthus annuus HOM05D000778 ORTHO05D000601 3.7e-11 73.9 321 30.2
HPP92_011042 Vanilla planifolia HOM05D000778 ORTHO05D000601 6.3e-11 73.2 442 27.8
unitig_26.g9154 Utricularia gibba HOM05D000778 ORTHO05D000601 8.2e-11 72.8 445 24.5
C03p23090 Brassica napus HOM05D000778 ORTHO05D000601 1.1e-10 72.4 388 28.9
Ca_04605_v3 Cicer arietinum L. HOM05D000778 ORTHO05D000601 1.8e-10 71.6 267 31.5
Nn2g12061 Nelumbo nucifera HOM05D000778 ORTHO05D000601 1.8e-10 71.6 490 26.5
Dinv32116 Davidia involucrata HOM05D015976 ORTHO05D019085 7.0e-10 69.7 78 50.0
PSO339G5199 Papaver somniferum HOM05D000778 ORTHO05D000601 7.0e-10 69.7 344 27.9
Zm00001eb333920 Zea mays HOM05D000778 ORTHO05D000601 9.1e-10 69.3 229 34.1
unitig_749.g14210 Utricularia gibba HOM05D000778 ORTHO05D000601 1.2e-09 68.9 398 26.4
BolC4t22862H Brassica oleracea HOM05D000778 ORTHO05D000601 2.0e-09 68.2 428 27.8
SGA_v2.0_scaffold31G12822 Striga asiatica HOM05D000778 ORTHO05D000601 3.5e-09 67.4 382 30.1
Lsat_1_v5_gn_1_58580 Lactuca sativa HOM05D000778 ORTHO05D000601 7.7e-09 66.2 290 31.0
PSO384G2510 Papaver somniferum HOM05D000778 ORTHO05D000601 7.7e-09 66.2 464 26.5
SalBow5G4642 Salvia bowleyana HOM05D000778 ORTHO05D000601 1.0e-08 65.9 333 28.8
HanXRQChr13g0398691 Helianthus annuus HOM05D000778 ORTHO05D000601 1.3e-08 65.5 166 34.3
Actinidia03861 Actinidia chinensis HOM05D000778 ORTHO05D000601 2.2e-08 64.7 140 37.9
Dinv31587 Davidia involucrata HOM05D015976 ORTHO05D000601 2.2e-08 64.7 78 48.7
HanXRQChr13g0402941 Helianthus annuus HOM05D000778 ORTHO05D000601 2.2e-08 64.7 318 27.0
TAR626G1583 Trochodendron aralioides HOM05D000778 ORTHO05D000601 2.9e-08 64.3 286 28.7
CDE07G0965 Ceratophyllum demersum HOM05D000778 ORTHO05D000601 3.8e-08 63.9 420 26.7
MELO3C003697.2 Cucumis melo HOM05D000778 ORTHO05D000601 6.5e-08 63.2 218 33.0
A03p19800 Brassica napus HOM05D000778 ORTHO05D000601 1.1e-07 62.4 250 31.2
Dinv39727 Davidia involucrata HOM05D001608 ORTHO05D002070 1.1e-07 62.4 78 47.4
HanXRQChr02g0052901 Helianthus annuus HOM05D000778 ORTHO05D000601 1.1e-07 62.4 286 26.2
ECA233G1996 Erigeron canadensis HOM05D000778 ORTHO05D000601 1.5e-07 62.0 309 29.8
HanXRQChr02g0050231 Helianthus annuus HOM05D000778 ORTHO05D000601 1.9e-07 61.6 292 26.7
TAR626G0265 Trochodendron aralioides HOM05D000778 ORTHO05D000601 3.2e-07 60.8 348 26.1
Lsat_1_v5_gn_6_21500 Lactuca sativa HOM05D000778 ORTHO05D000601 9.4e-07 59.3 279 28.7
Ciclev10014569m.g Citrus clementina HOM05D000960 ORTHO05D000683 1.2e-06 58.9 257 27.6
MBI01_g36595_MAGBIO Magnolia biondii HOM05D000778 ORTHO05D000601 1.2e-06 58.9 333 28.5
HPP92_016657 Vanilla planifolia HOM05D000778 ORTHO05D000601 1.2e-06 58.9 46 71.7
TAR383G0311 Trochodendron aralioides HOM05D000778 ORTHO05D000601 1.6e-06 58.5 428 25.7
COL.COLO4_18857 Corchorus olitorius HOM05D000778 ORTHO05D000601 2.1e-06 58.2 428 26.4
CsaV3_3G046420 Cucumis sativus L. HOM05D000778 ORTHO05D000601 2.1e-06 58.2 218 32.1
ClCG05G016890 Citrullus lanatus HOM05D000778 ORTHO05D000601 3.6e-06 57.4 185 34.6
HPP92_016638 Vanilla planifolia HOM05D000778 ORTHO05D000601 3.6e-06 57.4 274 31.0


User provided reference genes

Program Settings