Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 2.0e-67 258.8 121 100.0
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 6.5e-58 227.3 112 92.0
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 1.4e-52 209.5 104 92.3
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.2e-51 206.5 104 91.3
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.2e-51 206.5 104 91.3
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.2e-51 206.5 104 91.3
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 2.7e-51 205.3 104 90.4
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 2.7e-51 205.3 104 90.4
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 2.7e-51 205.3 104 90.4
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 3.5e-51 204.9 104 88.5
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 3.5e-51 204.9 104 88.5
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 3.5e-51 204.9 104 88.5
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 3.5e-51 204.9 104 88.5
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 3.5e-51 204.9 104 89.4
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 5.9e-51 204.1 104 89.4
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 5.9e-51 204.1 104 89.4
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 5.9e-51 204.1 104 90.4
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 5.9e-51 204.1 104 89.4
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 7.7e-51 203.8 104 88.5
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 7.7e-51 203.8 104 89.4
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 7.7e-51 203.8 104 88.5
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 7.7e-51 203.8 104 89.4
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 1.0e-50 203.4 104 88.5
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 1.3e-50 203.0 104 88.5
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 1.3e-50 203.0 104 89.4
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 1.3e-50 203.0 104 88.5
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 1.7e-50 202.6 104 87.5
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 1.7e-50 202.6 104 88.5
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.7e-50 202.6 104 89.4
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 1.7e-50 202.6 104 88.5
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 1.7e-50 202.6 104 88.5
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 2.2e-50 202.2 104 89.4
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 2.2e-50 202.2 104 89.4
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 2.2e-50 202.2 117 79.5
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 2.2e-50 202.2 104 88.5
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 2.9e-50 201.8 104 88.5
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 2.9e-50 201.8 104 87.5
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 2.9e-50 201.8 104 88.5
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 2.9e-50 201.8 104 88.5
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 3.8e-50 201.4 104 88.5
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 3.8e-50 201.4 104 87.5
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 3.8e-50 201.4 104 87.5
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 5.0e-50 201.1 104 87.5
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 5.0e-50 201.1 104 86.5
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 6.5e-50 200.7 104 87.5
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 6.5e-50 200.7 104 87.5
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 6.5e-50 200.7 104 87.5
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 6.5e-50 200.7 104 87.5
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 6.5e-50 200.7 104 87.5
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 6.5e-50 200.7 104 87.5
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 6.5e-50 200.7 104 87.5
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 6.5e-50 200.7 104 87.5
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 6.5e-50 200.7 104 87.5
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 6.5e-50 200.7 104 87.5
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 8.5e-50 200.3 104 86.5
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 8.5e-50 200.3 104 86.5
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 8.5e-50 200.3 104 88.5
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 8.5e-50 200.3 104 88.5
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 8.5e-50 200.3 104 86.5
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 8.5e-50 200.3 104 87.5
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 1.1e-49 199.9 104 86.5
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 1.1e-49 199.9 104 87.5
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 1.5e-49 199.5 104 87.5
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 1.5e-49 199.5 104 87.5
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 1.5e-49 199.5 104 87.5
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 1.5e-49 199.5 104 86.5
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 1.5e-49 199.5 104 86.5
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 1.5e-49 199.5 104 86.5
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 1.9e-49 199.1 104 86.5
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 1.9e-49 199.1 104 86.5
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 1.9e-49 199.1 104 87.5
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 1.9e-49 199.1 104 86.5
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 1.9e-49 199.1 104 86.5
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.5e-49 198.7 104 86.5
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.5e-49 198.7 104 86.5
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 2.5e-49 198.7 104 86.5
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 2.5e-49 198.7 104 87.5
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 2.5e-49 198.7 104 87.5
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 2.5e-49 198.7 104 87.5
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 2.5e-49 198.7 104 86.5
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 3.2e-49 198.4 104 87.5
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 3.2e-49 198.4 104 86.5
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 4.2e-49 198.0 104 86.5
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 4.2e-49 198.0 104 86.5
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 4.2e-49 198.0 104 86.5
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 4.2e-49 198.0 104 86.5
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 4.2e-49 198.0 104 86.5
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 4.2e-49 198.0 104 85.6
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 5.5e-49 197.6 104 86.5
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 5.5e-49 197.6 104 86.5
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 5.5e-49 197.6 104 85.6
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 7.2e-49 197.2 104 85.6
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 7.2e-49 197.2 104 85.6
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 7.2e-49 197.2 104 86.5
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 9.4e-49 196.8 104 84.6
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 9.4e-49 196.8 104 86.5
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 9.4e-49 196.8 104 86.5
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 1.2e-48 196.4 104 86.5
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.6e-48 196.1 104 85.6
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.6e-48 196.1 104 84.6
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 2.1e-48 195.7 104 86.5
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 2.7e-48 195.3 104 84.6
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 3.6e-48 194.9 104 84.6
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 4.7e-48 194.5 104 84.6
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 4.7e-48 194.5 104 84.6
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 4.7e-48 194.5 104 84.6
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 6.1e-48 194.1 104 84.6
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 6.1e-48 194.1 104 84.6
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.4e-47 193.0 104 83.7
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.4e-47 193.0 104 83.7
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 1.8e-47 192.6 104 82.7
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 2.3e-47 192.2 100 87.0
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 3.0e-47 191.8 120 76.7
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 8.8e-47 190.3 90 94.4
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 8.8e-47 190.3 104 83.7
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 3.4e-46 188.3 104 82.7
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 1.7e-45 186.0 91 91.2
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 1.1e-44 183.3 104 79.8
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 9.1e-44 180.3 91 87.9
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 2.0e-43 179.1 104 78.8
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 5.9e-43 177.6 104 77.9
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 5.9e-43 177.6 95 84.2
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 1.3e-42 176.4 91 84.6
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 3.8e-42 174.9 104 76.9
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 5.0e-42 174.5 104 76.0
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.1e-41 173.3 93 87.1
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 5.5e-41 171.0 104 73.1
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 6.1e-40 167.5 104 73.1
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 6.8e-39 164.1 104 68.3
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 8.3e-37 157.1 93 79.6
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 5.0e-34 147.9 104 64.4
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 1.6e-32 142.9 74 86.5
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 1.9e-25 119.4 69 78.3
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 2.1e-24 115.9 96 55.2
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 1.8e-23 112.8 82 68.3
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 5.8e-22 107.8 53 84.9
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 3.2e-12 75.5 33 90.9
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 3.2e-12 75.5 33 90.9
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 6.2e-08 61.2 65 52.3


User provided reference genes

Program Settings