Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 3.8e-235 817.8 408 100.0
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 5.7e-215 750.7 408 90.9
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 3.6e-209 731.5 408 88.5
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 3.6e-209 731.5 408 88.2
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 1.7e-203 712.6 408 85.8
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.7e-203 712.6 408 85.8
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 3.8e-203 711.4 408 85.3
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 1.1e-202 709.9 408 85.0
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 4.9e-198 694.5 398 85.4
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.8e-197 692.6 400 84.8
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.4e-197 692.2 398 84.9
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 8.0e-193 677.2 408 81.1
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 1.4e-192 676.4 407 82.6
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 1.4e-192 676.4 407 82.6
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 3.0e-192 675.2 408 79.9
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 1.5e-191 672.9 410 79.0
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 2.6e-191 672.2 409 79.2
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 4.4e-191 671.4 411 78.1
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 4.4e-191 671.4 407 81.8
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 7.5e-191 670.6 408 79.2
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.3e-190 669.8 408 78.7
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 4.9e-190 667.9 408 79.2
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 8.3e-190 667.2 408 78.2
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 8.3e-190 667.2 409 79.0
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 1.1e-189 666.8 408 78.2
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 3.2e-189 665.2 408 78.7
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 4.1e-189 664.8 408 80.6
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 9.2e-189 663.7 408 78.4
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 7.8e-188 660.6 409 79.2
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 1.0e-187 660.2 408 77.9
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 5.0e-187 657.9 408 77.7
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 3.3e-186 655.2 408 78.9
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 4.3e-186 654.8 408 77.5
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 7.3e-186 654.1 408 77.2
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 7.3e-186 654.1 408 78.4
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.6e-185 652.9 408 77.0
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 8.0e-185 650.6 408 76.7
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.1e-184 650.2 408 75.7
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.8e-184 649.4 408 75.2
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 5.2e-184 647.9 408 77.0
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 3.7e-182 641.7 408 76.7
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 4.9e-182 641.3 408 77.5
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.1e-181 640.2 408 77.0
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 5.4e-181 637.9 408 74.5
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 1.6e-180 636.3 407 76.4
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 2.7e-180 635.6 407 76.7
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 3.5e-180 635.2 408 75.7
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.0e-179 633.6 408 75.7
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 3.0e-179 632.1 410 74.6
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 8.6e-179 630.6 408 75.0
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 1.9e-178 629.4 409 74.6
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 1.9e-178 629.4 408 73.8
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 4.3e-178 628.2 410 73.4
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 4.3e-178 628.2 408 74.3
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 7.3e-178 627.5 409 74.1
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 3.6e-177 625.2 409 73.6
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 4.7e-177 624.8 408 75.2
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 1.1e-176 623.6 407 74.7
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 1.8e-176 622.9 407 74.4
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 2.3e-176 622.5 408 74.8
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 3.1e-176 622.1 408 73.8
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 6.8e-176 620.9 408 73.8
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 8.9e-176 620.5 408 74.3
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 2.6e-175 619.0 404 75.0
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 9.9e-175 617.1 402 73.6
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.3e-174 616.7 408 73.0
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 1.9e-173 612.8 409 73.1
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 3.2e-173 612.1 409 73.1
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 5.4e-173 611.3 408 71.8
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 7.1e-173 610.9 408 73.8
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 3.5e-172 608.6 408 72.3
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 3.5e-172 608.6 408 72.3
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 4.6e-172 608.2 402 72.1
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 8.6e-171 604.0 408 71.3
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 1.5e-170 603.2 412 71.8
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 1.5e-170 603.2 439 69.7
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 5.6e-170 601.3 412 71.6
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 7.3e-170 600.9 404 75.0
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 1.6e-169 599.7 412 71.4
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 2.1e-169 599.4 404 74.8
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 2.1e-169 599.4 409 71.4
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 2.8e-169 599.0 406 71.9
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 2.8e-169 599.0 408 71.1
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 3.6e-169 598.6 412 71.1
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 8.1e-169 597.4 412 71.1
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 8.1e-169 597.4 412 71.1
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 8.1e-169 597.4 412 71.1
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 8.1e-169 597.4 412 72.6
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 1.1e-168 597.0 409 71.4
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 2.4e-168 595.9 409 70.4
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 2.4e-168 595.9 408 71.3
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 3.1e-168 595.5 410 71.2
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 8.9e-168 594.0 401 72.3
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 2.6e-167 592.4 408 72.8
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 9.9e-167 590.5 409 70.2
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 2.2e-166 589.3 403 71.0
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 1.4e-165 586.6 406 72.4
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 1.9e-165 586.3 423 67.1
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 5.4e-165 584.7 406 70.7
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 5.4e-165 584.7 410 70.5
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 7.1e-165 584.3 412 70.9
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 2.1e-164 582.8 408 68.6
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 7.8e-164 580.9 405 69.9
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 1.0e-163 580.5 405 69.9
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.9e-162 576.2 360 77.2
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 1.6e-161 573.2 405 68.9
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 8.1e-161 570.9 407 68.1
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 1.4e-160 570.1 408 68.4
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 2.0e-159 566.2 356 75.3
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 6.4e-158 561.2 494 60.3
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 4.3e-154 548.5 409 66.7
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 1.8e-152 543.1 313 85.6
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 4.0e-152 542.0 417 63.3
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 3.4e-151 538.9 408 65.4
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 2.7e-148 529.3 405 64.0
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 6.0e-148 528.1 405 63.5
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 1.9e-146 523.1 351 72.1
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.3e-139 500.4 403 59.1
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 1.8e-139 500.0 406 60.6
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 1.1e-138 497.3 408 62.0
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 7.9e-132 474.6 405 57.3
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 3.0e-131 472.6 315 73.7
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 2.5e-130 469.5 416 55.3
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 2.2e-118 429.9 360 60.0
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 1.9e-117 426.8 273 73.3
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.5e-111 407.1 273 70.7
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 3.5e-111 406.0 267 74.9
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 1.0e-107 394.4 316 61.1
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 2.1e-100 370.2 410 47.6
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 2.7e-100 369.8 426 45.8
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 9.7e-98 361.3 412 52.7
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 9.4e-93 344.7 421 46.8
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 6.8e-91 338.6 413 45.8
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 5.0e-86 322.4 253 66.4
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 2.5e-77 293.5 443 40.6
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 2.9e-73 280.0 161 83.9
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 5.4e-72 275.8 173 79.8
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 2.5e-69 266.9 176 72.7
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 1.3e-65 254.6 176 71.6
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 1.6e-60 237.7 135 85.2
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 4.0e-59 233.0 213 54.5
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 6.8e-59 232.3 173 61.3
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 1.6e-52 211.1 354 36.4
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.1e-52 210.7 193 53.9
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 8.9e-51 205.3 112 84.8
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 5.8e-50 202.6 148 62.2
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 4.8e-36 156.4 93 79.6
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 1.0e-30 138.7 97 67.0
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 2.9e-25 120.6 97 67.0
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 5.1e-22 109.8 84 71.4
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 4.8e-20 103.2 70 71.4
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 1.3e-17 95.1 242 29.3
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 6.7e-14 82.8 57 71.9


User provided reference genes

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