Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G080200 Prunus persica HOM05D007056 ORTHO05D008278 1.8e-156 555.8 274 100.0
MD14G1054600 Malus domestica HOM05D007056 ORTHO05D008278 5.5e-121 438.0 277 80.9
FAN09G4108 Fragaria x ananassa HOM05D007056 ORTHO05D008278 6.5e-114 414.5 268 77.6
FAN14G2508 Fragaria x ananassa HOM05D007056 ORTHO05D008278 2.5e-113 412.5 268 77.2
RcHm_v2.0_Chr3g0479281 Rosa chinensis HOM05D007056 ORTHO05D008278 6.7e-111 404.4 267 76.0
Potri.016G060000 Populus trichocarpa HOM05D007056 ORTHO05D008278 7.7e-107 391.0 268 73.5
Ciclev10012466m.g Citrus clementina HOM05D007056 ORTHO05D008278 3.2e-105 385.6 269 72.9
CiPaw.09G028900 Carya illinoinensis HOM05D007056 ORTHO05D008278 5.5e-105 384.8 268 74.6
Thecc.05G174400 Theobroma cacao HOM05D007056 ORTHO05D008278 5.5e-105 384.8 276 70.7
QL07p024320 Quercus lobata HOM05D007056 ORTHO05D008278 2.1e-104 382.9 268 72.4
QL07p024358 Quercus lobata HOM05D007056 ORTHO05D008278 2.1e-104 382.9 268 72.4
Sabra16G0062800 Salix brachista HOM05D007056 ORTHO05D008278 2.1e-104 382.9 271 72.0
CANSAT64G0992 Cannabis sativa HOM05D007056 ORTHO05D008278 3.6e-104 382.1 237 76.4
Gorai.012G099400 Gossypium raimondii HOM05D007056 ORTHO05D008278 4.7e-104 381.7 270 71.5
Gohir.D04G089300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 8.0e-104 380.9 270 72.2
Duzib093G0790 Durio zibethinus HOM05D007056 ORTHO05D008278 1.0e-103 380.6 280 71.1
Lalb_Chr18g0048001 Lupinus albus HOM05D007056 ORTHO05D008278 2.0e-102 376.3 274 71.2
PGR142G3072 Punica granatum HOM05D007056 ORTHO05D008278 2.0e-102 376.3 274 70.4
Glyma.19G149400 Glycine max HOM05D007056 ORTHO05D008278 2.6e-102 375.9 226 77.9
Actinidia38590 Actinidia chinensis HOM05D007056 ORTHO05D008278 4.4e-102 375.2 272 71.7
TWI77G0776 Tripterygium wilfordii HOM05D007056 ORTHO05D008278 4.4e-102 375.2 267 71.9
Dinv16370 Davidia involucrata HOM05D007056 ORTHO05D008278 1.3e-101 373.6 270 71.1
VMungo1383G1827 Vigna mungo HOM05D007056 ORTHO05D008278 1.3e-101 373.6 226 78.3
Ca_08534_v3 Cicer arietinum L. HOM05D007056 ORTHO05D008278 2.2e-101 372.9 219 79.5
Lj2A365G87 Lonicera japonica HOM05D007056 ORTHO05D008278 6.3e-101 371.3 201 85.1
arahy.Tifrunner.gnm1.ann1.DK1M71 Arachis hypogaea HOM05D007056 ORTHO05D008278 8.3e-101 370.9 222 78.8
Nn2g15729 Nelumbo nucifera HOM05D007056 ORTHO05D008278 8.3e-101 370.9 269 71.0
TAR369G0080 Trochodendron aralioides HOM05D007056 ORTHO05D008278 1.8e-100 369.8 273 70.0
Cfa020149 Carpinus fangiana HOM05D007056 ORTHO05D008278 2.4e-100 369.4 269 71.4
Lj1g0028043 Lotus japonicus HOM05D007056 ORTHO05D008278 2.4e-100 369.4 235 77.0
CSS0008084 Camellia sinensis var. sinensis HOM05D007056 ORTHO05D008278 5.4e-100 368.2 268 73.1
EL10Ac3g06891 Beta vulgaris HOM05D007056 ORTHO05D008278 7.0e-100 367.9 245 73.1
MBI19_g17420_MAGBIO Magnolia biondii HOM05D007056 ORTHO05D008278 9.1e-100 367.5 256 70.7
arahy.Tifrunner.gnm1.ann1.LTU6F0 Arachis hypogaea HOM05D007056 ORTHO05D008278 1.2e-99 367.1 232 75.9
Medtr7g093540 Medicago truncatula HOM05D007056 ORTHO05D008278 1.2e-99 367.1 222 77.9
Cpa.g.sc85.61 Carica papaya HOM05D007056 ORTHO05D008278 4.5e-99 365.2 268 68.7
Atru.chr8.1149 Acer truncatum HOM05D007056 ORTHO05D008278 5.9e-99 364.8 218 78.9
AUR62011999 Chenopodium quinoa HOM05D007056 ORTHO05D008278 5.9e-99 364.8 242 74.8
Aqoxy2G00097 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 7.7e-99 364.4 233 74.7
Eucgr.K01848 Eucalyptus grandis HOM05D007056 ORTHO05D008278 1.0e-98 364.0 219 79.5
Phvul.001G143900 Phaseolus vulgaris HOM05D007056 ORTHO05D008278 3.8e-98 362.1 199 84.9
Cc06_g15700 Coffea canephora HOM05D007056 ORTHO05D008278 1.1e-97 360.5 269 68.0
Os02g0774500 Oryza sativa ssp. japonica HOM05D007056 ORTHO05D008278 1.1e-97 360.5 194 86.6
CARHR086600 Cardamine hirsuta HOM05D007056 ORTHO05D008278 1.9e-97 359.8 233 75.1
SGA_v2.0_scaffold69G23055 Striga asiatica HOM05D007056 ORTHO05D008278 1.9e-97 359.8 206 80.6
BcaB06g25552 Brassica carinata HOM05D007056 ORTHO05D008278 3.2e-97 359.0 201 83.6
COL.COLO4_05956 Corchorus olitorius HOM05D007056 ORTHO05D008278 4.2e-97 358.6 273 65.9
AUR62015338 Chenopodium quinoa HOM05D007056 ORTHO05D008278 5.5e-97 358.2 243 74.1
THA.LOC104809936 Tarenaya hassleriana HOM05D007056 ORTHO05D008278 5.5e-97 358.2 220 76.4
Ah.04g152820 Amaranthus hybridus HOM05D007056 ORTHO05D008278 7.2e-97 357.8 274 66.4
CAN.G128.50 Capsicum annuum HOM05D007056 ORTHO05D008278 1.2e-96 357.1 243 74.1
Zm00001eb256530 Zea mays HOM05D007056 ORTHO05D008278 1.6e-96 356.7 203 81.8
AL3G23650 Arabidopsis lyrata HOM05D007056 ORTHO05D008278 2.1e-96 356.3 199 83.4
AT3G12040 Arabidopsis thaliana HOM05D007056 ORTHO05D008278 2.1e-96 356.3 255 69.8
ATR0598G297 Amborella trichopoda HOM05D007056 ORTHO05D008278 4.7e-96 355.1 198 81.8
Thhalv10021378m.g Eutrema salsugineum HOM05D007056 ORTHO05D008278 6.1e-96 354.8 199 82.9
Carub.0003s1138 Capsella rubella HOM05D007056 ORTHO05D008278 8.0e-96 354.4 240 71.7
CsaV3_3G038650 Cucumis sativus L. HOM05D007056 ORTHO05D008278 8.0e-96 354.4 274 65.7
PGSC0003DMG400023706 Solanum tuberosum HOM05D007056 ORTHO05D008278 8.0e-96 354.4 195 86.2
A05p37300 Brassica napus HOM05D007056 ORTHO05D008278 1.0e-95 354.0 251 69.7
Sp3g10270 Schrenkiella parvula HOM05D007056 ORTHO05D008278 1.0e-95 354.0 250 70.4
Solyc10g080560.2 Solanum lycopersicum HOM05D007056 ORTHO05D008278 1.0e-95 354.0 230 76.5
BcaC05g29295 Brassica carinata HOM05D007056 ORTHO05D008278 3.0e-95 352.4 255 68.6
BraA05t22526Z Brassica rapa HOM05D007056 ORTHO05D008278 3.0e-95 352.4 255 68.2
Sopen10g031100 Solanum pennellii HOM05D007056 ORTHO05D008278 5.2e-95 351.7 195 85.6
Nitab4.5_0001079g0030 Nicotiana tabacum HOM05D007056 ORTHO05D008278 6.8e-95 351.3 255 69.4
DCAR_019779 Daucus carota HOM05D007056 ORTHO05D008278 5.7e-94 348.2 230 73.0
C05p55770 Brassica napus HOM05D007056 ORTHO05D008278 7.5e-94 347.8 256 68.4
BolC5t34244H Brassica oleracea HOM05D007056 ORTHO05D008278 7.5e-94 347.8 256 68.4
HanXRQChr01g0010031 Helianthus annuus HOM05D007056 ORTHO05D008278 1.7e-93 346.7 226 72.1
Rhsim04G0094900 Rhododendron simsii HOM05D007056 ORTHO05D008278 4.9e-93 345.1 198 80.8
HPP92_004381 Vanilla planifolia HOM05D007056 ORTHO05D008278 1.8e-92 343.2 195 81.0
Aa31sc80G100 Aethionema arabicum HOM05D007056 ORTHO05D008278 3.1e-92 342.4 246 68.3
TPR.G35780 Trifolium pratense HOM05D007056 ORTHO05D008278 3.1e-92 342.4 234 70.5
SEGI_25756 Sequoiadendron giganteum HOM05D007056 ORTHO05D008278 5.4e-92 341.7 198 78.8
CDE06G2434 Ceratophyllum demersum HOM05D007056 ORTHO05D008278 2.7e-91 339.3 245 66.5
GSVIVG01033475001 Vitis vinifera HOM05D007056 ORTHO05D008278 4.5e-91 338.6 288 63.9
Peaxi162Scf00249g01221 Petunia axillaris HOM05D007056 ORTHO05D008278 7.8e-91 337.8 245 69.0
Lsat_1_v5_gn_5_165300 Lactuca sativa HOM05D007056 ORTHO05D008278 5.0e-90 335.1 227 72.2
unitig_27.g25110 Utricularia gibba HOM05D007056 ORTHO05D008278 1.2e-88 330.5 248 66.1
SMO146G0068 Selaginella moellendorffii HOM05D007056 ORTHO05D008278 1.2e-86 323.9 233 67.8
AagrBONN_evm.TU.Sc2ySwM_344.2853 Anthoceros agrestis HOM05D007056 ORTHO05D008278 2.0e-86 323.2 200 75.5
FvH4_6g21980 Fragaria vesca HOM05D007056 ORTHO05D008278 3.4e-86 322.4 216 75.9
Hund24814 Selenicereus undatus HOM05D007056 ORTHO05D008278 3.2e-84 315.8 274 62.4
Aqoxy3G01855 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 4.6e-83 312.0 237 66.2
Mapoly0003s0280 Marchantia polymorpha HOM05D007056 ORTHO05D008278 3.9e-82 308.9 270 58.1
PSO541G5037 Papaver somniferum HOM05D007056 ORTHO05D008278 6.6e-82 308.1 274 62.8
Psat3g067120 Pisum sativum HOM05D007056 ORTHO05D008278 1.5e-81 307.0 167 81.4
PSO675G9168 Papaver somniferum HOM05D007056 ORTHO05D008278 1.6e-80 303.5 274 61.7
BcaB06g25551 Brassica carinata HOM05D007056 ORTHO05D008278 8.9e-79 297.7 165 81.8
ECA248G2501 Erigeron canadensis HOM05D007056 ORTHO05D008278 8.9e-79 297.7 171 78.9
Pp3c1_41490 Physcomitrium patens HOM05D007056 ORTHO05D008278 1.5e-78 297.0 277 57.0
Oeu024494.3 Olea europaea HOM05D007056 ORTHO05D008278 1.4e-76 290.4 262 61.1
vmacro22110 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 3.2e-76 289.3 362 47.8
ECA248G2516 Erigeron canadensis HOM05D007056 ORTHO05D008278 5.0e-74 282.0 164 76.8
CBR_g48019 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-73 280.4 225 60.9
Sed0027134 Sechium edule HOM05D007056 ORTHO05D008278 7.5e-70 268.1 217 67.7
Gohir.A04G057300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 4.9e-61 238.8 197 65.5
Migut.J01851 Erythranthe guttata HOM05D007056 ORTHO05D008278 7.3e-57 224.9 122 83.6
FAN02G0430 Fragaria x ananassa HOM05D007056 ORTHO05D008278 9.6e-57 224.6 172 69.8
Psat3g067080 Pisum sativum HOM05D007056 ORTHO05D008278 2.1e-56 223.4 137 79.6
Psat3g067040 Pisum sativum HOM05D007056 ORTHO05D008278 1.3e-53 214.2 197 58.4
ECA248G3402 Erigeron canadensis HOM05D000009 ORTHO05D000008 4.2e-52 209.1 121 76.9
ClCG10G017660 Citrullus lanatus HOM05D007056 ORTHO05D008278 3.5e-51 206.1 216 55.1
Manes.08G042900 Manihot esculenta HOM05D007056 ORTHO05D008278 6.6e-50 201.8 175 66.3
MELO3C009610.2 Cucumis melo HOM05D007056 ORTHO05D008278 9.0e-47 191.4 268 45.9
Haze_20013 Corylus avellana HOM05D007056 ORTHO05D008278 1.1e-44 184.5 491 32.4
Sc13g0002370 Simmondsia chinensis HOM05D007056 ORTHO05D008278 5.1e-42 175.6 173 57.8
Nitab4.5_0001440g0050 Nicotiana tabacum HOM05D007056 ORTHO05D008278 7.4e-41 171.8 94 80.9
PRCOL_00003183 Prasinoderma coloniale HOM05D007056 ORTHO05D008278 1.5e-33 147.5 215 43.7
Hma1.2p1_0645F.1_g194860 Hydrangea macrophylla HOM05D007056 ORTHO05D008278 4.3e-33 146.0 73 84.9
ECA233G2032 Erigeron canadensis HOM05D007056 ORTHO05D008278 2.9e-29 133.3 88 70.5
SHI31778 Sapria himalayana HOM05D007056 ORTHO05D008278 1.8e-26 124.0 72 76.4
vmacro22990 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 4.5e-14 82.8 96 49.0
SHI31775 Sapria himalayana HOM05D000002 ORTHO05D000001 7.4e-09 65.5 74 51.4


User provided reference genes

Program Settings