Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G077500 Prunus persica HOM05D005723 ORTHO05D005968 2.4e-162 575.5 301 100.0
MD12G1056700 Malus domestica HOM05D005723 ORTHO05D005968 1.5e-135 486.5 301 83.7
RcHm_v2.0_Chr3g0479531 Rosa chinensis HOM05D005723 ORTHO05D005968 1.4e-125 453.4 312 74.7
FAN14G2504 Fragaria x ananassa HOM05D005723 ORTHO05D005968 6.5e-123 444.5 316 73.7
FAN02G2166 Fragaria x ananassa HOM05D005723 ORTHO05D005968 4.2e-122 441.8 315 73.3
MD14G1055000 Malus domestica HOM05D005723 ORTHO05D005968 2.4e-117 426.0 282 77.7
Cfa020161 Carpinus fangiana HOM05D005723 ORTHO05D005968 7.6e-116 421.0 307 74.6
Manes.08G043200 Manihot esculenta HOM05D005723 ORTHO05D005968 9.3e-114 414.1 304 70.1
FvH4_6g22180 Fragaria vesca HOM05D005723 ORTHO05D005968 2.7e-113 412.5 284 76.1
CiPaw.09G030000 Carya illinoinensis HOM05D005723 ORTHO05D005968 1.5e-111 406.8 303 72.3
FAN05G3703 Fragaria x ananassa HOM05D005723 ORTHO05D005968 3.3e-111 405.6 296 72.6
Actinidia17274 Actinidia chinensis HOM05D005723 ORTHO05D005968 1.5e-108 396.7 306 67.3
Sopen03g015150 Solanum pennellii HOM05D005723 ORTHO05D005968 2.6e-108 396.0 304 66.8
Solyc03g062830.3 Solanum lycopersicum HOM05D005723 ORTHO05D005968 5.9e-108 394.8 304 66.8
Peaxi162Scf00258g00623 Petunia axillaris HOM05D005723 ORTHO05D005968 1.0e-107 394.0 306 66.7
Gohir.A09G128200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 5.0e-107 391.7 303 67.0
CANSAT64G2568 Cannabis sativa HOM05D005723 ORTHO05D005968 6.5e-107 391.3 306 66.0
Hma1.2p1_0648F.1_g195110 Hydrangea macrophylla HOM05D005723 ORTHO05D005968 3.2e-106 389.0 322 63.0
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 7.2e-106 387.9 309 65.0
TWI53G1132 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 9.4e-106 387.5 309 66.3
QL07p023897 Quercus lobata HOM05D005723 ORTHO05D005968 1.2e-105 387.1 305 67.9
Gohir.D09G124200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 2.1e-105 386.3 303 66.3
HanXRQChr13g0390481 Helianthus annuus HOM05D005723 ORTHO05D005968 2.7e-105 386.0 303 65.7
Sc13g0002300 Simmondsia chinensis HOM05D005723 ORTHO05D005968 3.6e-105 385.6 233 80.3
Sabra06G0148000 Salix brachista HOM05D005723 ORTHO05D005968 6.1e-105 384.8 211 84.8
Gorai.006G143000 Gossypium raimondii HOM05D005723 ORTHO05D005968 1.0e-104 384.0 304 66.4
Atru.chr8.1119 Acer truncatum HOM05D005723 ORTHO05D005968 1.8e-104 383.3 300 65.0
Potri.016G045300 Populus trichocarpa HOM05D005723 ORTHO05D005968 2.3e-104 382.9 225 80.4
THA.LOC104824477 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 2.0e-103 379.8 303 65.3
THA.LOC104802583 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 2.6e-103 379.4 311 65.0
Potri.006G192800 Populus trichocarpa HOM05D005723 ORTHO05D005968 4.4e-103 378.6 211 83.4
Thhalv10017043m.g Eutrema salsugineum HOM05D005723 ORTHO05D005968 3.7e-102 375.6 303 65.0
CARHR137150 Cardamine hirsuta HOM05D005723 ORTHO05D005968 1.8e-101 373.2 303 65.0
Thecc.05G171800 Theobroma cacao HOM05D005723 ORTHO05D005968 4.1e-101 372.1 310 61.9
Aa31LG1G24130 Aethionema arabicum HOM05D005723 ORTHO05D005968 6.9e-101 371.3 302 63.2
SGA_v2.0_scaffold274G46488 Striga asiatica HOM05D005723 ORTHO05D005968 1.2e-100 370.5 234 74.8
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 1.5e-100 370.2 300 64.3
Psat3g068400 Pisum sativum HOM05D005723 ORTHO05D005968 1.5e-100 370.2 303 63.0
MELO3C009621.2 Cucumis melo HOM05D005723 ORTHO05D005968 2.6e-100 369.4 311 64.0
Lju124A25G33 Lonicera japonica HOM05D005723 ORTHO05D005968 2.6e-100 369.4 202 83.7
AT2G42070 Arabidopsis thaliana HOM05D005723 ORTHO05D005968 3.4e-100 369.0 302 64.9
Cc06_g15920 Coffea canephora HOM05D005723 ORTHO05D005968 4.5e-100 368.6 234 75.6
AL4G40430 Arabidopsis lyrata HOM05D005723 ORTHO05D005968 5.9e-100 368.2 302 64.2
Ca_08526_v3 Cicer arietinum L. HOM05D005723 ORTHO05D005968 5.9e-100 368.2 301 62.1
Nitab4.5_0000324g0030 Nicotiana tabacum HOM05D005723 ORTHO05D005968 5.9e-100 368.2 202 84.2
A03p23560 Brassica napus HOM05D005723 ORTHO05D005968 7.7e-100 367.9 303 63.7
BraA03t11573Z Brassica rapa HOM05D005723 ORTHO05D005968 7.7e-100 367.9 303 63.7
Sed0013306 Sechium edule HOM05D005723 ORTHO05D005968 1.3e-99 367.1 317 62.5
GSVIVG01033492001 Vitis vinifera HOM05D005723 ORTHO05D005968 3.8e-99 365.5 235 74.9
Migut.K00036 Erythranthe guttata HOM05D005723 ORTHO05D005968 5.0e-99 365.2 234 73.9
Nn2g15696 Nelumbo nucifera HOM05D005723 ORTHO05D005968 6.5e-99 364.8 304 60.9
BcaB01g03439 Brassica carinata HOM05D005723 ORTHO05D005968 8.5e-99 364.4 304 63.8
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 8.5e-99 364.4 304 64.1
Carub.0004s2440 Capsella rubella HOM05D005723 ORTHO05D005968 1.9e-98 363.2 302 63.9
Medtr7g093280 Medicago truncatula HOM05D005723 ORTHO05D005968 7.2e-98 361.3 236 72.0
EL10Ac3g06909 Beta vulgaris HOM05D005723 ORTHO05D005968 9.4e-98 360.9 237 73.8
Lalb_Chr18g0047891 Lupinus albus HOM05D005723 ORTHO05D005968 9.4e-98 360.9 225 74.7
Phvul.001G142700 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 9.4e-98 360.9 233 73.0
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 1.2e-97 360.5 286 66.1
TPR.G18229 Trifolium pratense HOM05D005723 ORTHO05D005968 1.2e-97 360.5 233 73.0
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 2.1e-97 359.8 202 79.7
VMungo1383G0807 Vigna mungo HOM05D005723 ORTHO05D005968 2.1e-97 359.8 233 73.4
Glyma.09G111000 Glycine max HOM05D005723 ORTHO05D005968 1.0e-96 357.5 224 75.9
Glyma.19G148100 Glycine max HOM05D005723 ORTHO05D005968 2.3e-96 356.3 233 74.2
BcaC01g05310 Brassica carinata HOM05D005723 ORTHO05D005968 3.0e-96 355.9 302 62.3
Hund24799 Selenicereus undatus HOM05D005723 ORTHO05D005968 3.0e-96 355.9 238 72.3
BcaC02g12456 Brassica carinata HOM05D005723 ORTHO05D005968 3.9e-96 355.5 300 62.3
BolC4t21962H Brassica oleracea HOM05D005723 ORTHO05D005968 3.9e-96 355.5 300 62.3
BraA05t19263Z Brassica rapa HOM05D005723 ORTHO05D005968 5.2e-96 355.1 300 62.0
BolC3t15179H Brassica oleracea HOM05D005723 ORTHO05D005968 6.7e-96 354.8 302 62.3
Lj1g0008741 Lotus japonicus HOM05D005723 ORTHO05D005968 1.1e-95 354.0 230 74.8
Phvul.007G260200 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 2.0e-95 353.2 212 77.8
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 2.6e-95 352.8 202 80.7
C04p03240 Brassica napus HOM05D005723 ORTHO05D005968 3.3e-95 352.4 300 62.0
Dinv14303 Davidia involucrata HOM05D005723 ORTHO05D005968 2.8e-94 349.4 267 70.0
Rhsim04G0096600 Rhododendron simsii HOM05D005723 ORTHO05D005968 1.4e-93 347.1 284 64.8
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 4.1e-93 345.5 212 76.4
Aqoxy1G00026 Aquilegia oxysepala HOM05D005723 ORTHO05D005968 1.2e-92 344.0 204 76.5
ClCG10G017570 Citrullus lanatus HOM05D005723 ORTHO05D005968 1.2e-92 344.0 316 62.0
Lsat_1_v5_gn_5_163580 Lactuca sativa HOM05D005723 ORTHO05D005968 2.0e-92 343.2 305 60.0
Ciclev10013558m.g Citrus clementina HOM05D005723 ORTHO05D005968 2.6e-92 342.8 221 76.0
MBI08_g23085_MAGBIO Magnolia biondii HOM05D005723 ORTHO05D005968 1.0e-91 340.9 209 75.6
Nitab4.5_0002488g0020 Nicotiana tabacum HOM05D005723 ORTHO05D005968 2.2e-91 339.7 293 63.5
DCAR_019848 Daucus carota HOM05D005723 ORTHO05D005968 1.1e-90 337.4 306 61.1
Sp4g24280 Schrenkiella parvula HOM05D005723 ORTHO05D005968 4.2e-90 335.5 303 61.4
MSTRG.6477 Avicennia marina HOM05D005723 ORTHO05D005968 3.6e-89 332.4 232 67.7
PGR142G4063 Punica granatum HOM05D005723 ORTHO05D005968 4.7e-89 332.0 218 72.0
arahy.Tifrunner.gnm1.ann1.USMU0G Arachis hypogaea HOM05D005723 ORTHO05D005968 2.0e-87 326.6 299 60.2
Glyma.03G145000 Glycine max HOM05D005723 ORTHO05D005968 1.7e-86 323.6 191 78.5
CDE05G2791 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 2.2e-86 323.2 222 70.3
Oeu024483.2 Olea europaea HOM05D005723 ORTHO05D005968 2.8e-86 322.8 181 82.3
SalBow1G1145 Salvia bowleyana HOM05D005723 ORTHO05D005968 3.1e-85 319.3 273 63.4
C03p28100 Brassica napus HOM05D005723 ORTHO05D005968 1.0e-83 314.3 285 60.4
CDE05G1067 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 2.9e-83 312.8 222 68.0
Zm00001eb320790 Zea mays HOM05D005723 ORTHO05D005968 8.5e-83 311.2 214 66.4
Zm00001eb104410 Zea mays HOM05D005723 ORTHO05D005968 2.5e-82 309.7 195 70.8
PSO384G0309 Papaver somniferum HOM05D005723 ORTHO05D005968 4.7e-81 305.4 302 53.3
ATR0807G138 Amborella trichopoda HOM05D005723 ORTHO05D005968 1.8e-80 303.5 221 66.1
CsaV3_3G038770 Cucumis sativus L. HOM05D005723 ORTHO05D005968 1.8e-80 303.5 268 60.1
PSO339G0271 Papaver somniferum HOM05D005723 ORTHO05D005968 1.8e-80 303.5 308 51.9
Cpa.g.sc85.50 Carica papaya HOM05D005723 ORTHO05D005968 4.4e-79 298.9 300 57.3
HPP92_009024 Vanilla planifolia HOM05D005723 ORTHO05D005968 1.0e-75 287.7 201 65.7
Pp3c12_9930 Physcomitrium patens HOM05D005723 ORTHO05D005968 6.6e-75 285.0 197 64.5
AUR62015361 Chenopodium quinoa HOM05D005723 ORTHO05D005968 1.5e-74 283.9 163 82.8
arahy.Tifrunner.gnm1.ann1.4E6ATU Arachis hypogaea HOM05D005723 ORTHO05D005968 1.2e-73 280.8 210 66.2
HanXRQChr01g0009761 Helianthus annuus HOM05D005723 ORTHO05D005968 2.1e-73 280.0 159 79.9
ECA248G2266 Erigeron canadensis HOM05D005723 ORTHO05D005968 5.2e-72 275.4 159 78.6
Oeu034265.1 Olea europaea HOM05D005723 ORTHO05D005968 2.0e-71 273.5 156 81.4
AUR62012024 Chenopodium quinoa HOM05D005723 ORTHO05D005968 1.2e-68 264.2 151 82.8
SMO358G0738 Selaginella moellendorffii HOM05D005723 ORTHO05D005968 6.6e-67 258.5 199 58.3
arahy.Tifrunner.gnm1.ann1.WEU379 Arachis hypogaea HOM05D005723 ORTHO05D005968 9.5e-66 254.6 286 50.7
unitig_748.g7589 Utricularia gibba HOM05D005723 ORTHO05D005968 4.1e-61 239.2 141 80.1
Cre06.g285200 Chlamydomonas reinhardtii HOM05D005723 ORTHO05D005968 6.6e-59 231.9 196 53.1
Haze_19996 Corylus avellana HOM05D005723 ORTHO05D005968 6.2e-57 225.3 124 87.1
TWI74G1261 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 1.8e-56 223.8 253 50.2
Actinidia38586 Actinidia chinensis HOM05D005723 ORTHO05D005968 3.1e-56 223.0 303 46.9
MSTRG.10844 Avicennia marina HOM05D005723 ORTHO05D005968 7.5e-55 218.4 124 83.9
SEGI_25574 Sequoiadendron giganteum HOM05D005723 ORTHO05D005968 2.2e-54 216.9 138 73.9
PRCOL_00004505 Prasinoderma coloniale HOM05D005723 ORTHO05D005968 3.5e-52 209.5 200 47.0
Sed0026560 Sechium edule HOM05D005723 ORTHO05D005968 1.4e-48 197.6 209 51.7
arahy.Tifrunner.gnm1.ann1.HLHI9C Arachis hypogaea HOM05D005723 ORTHO05D005968 1.7e-46 190.7 119 78.2
Os09g0553300 Oryza sativa ssp. japonica HOM05D005723 ORTHO05D005968 3.7e-46 189.5 111 74.8
HPP92_009080 Vanilla planifolia HOM05D005723 ORTHO05D005968 9.2e-45 184.9 110 73.6
Mapoly0013s0082 Marchantia polymorpha HOM05D005723 ORTHO05D005968 1.2e-44 184.5 141 62.4
AagrBONN_evm.TU.Sc2ySwM_117.3227 Anthoceros agrestis HOM05D005723 ORTHO05D005968 7.3e-42 175.3 141 56.7
C05p20370 Brassica napus HOM05D005723 ORTHO05D005968 2.6e-39 166.8 115 73.0
BolC5t30732H Brassica oleracea HOM05D000589 ORTHO05D005968 2.6e-39 166.8 115 73.0
Pp3c3_14150 Physcomitrium patens HOM05D005723 ORTHO05D005968 1.1e-32 144.8 158 49.4
CBR_g29504 Chara braunii HOM05D005723 ORTHO05D005968 1.5e-31 141.0 160 42.5
Gohir.A10G137800 Gossypium hirsutum HOM05D005723 ORTHO05D005968 5.8e-31 139.0 90 78.9
Gohir.A13G075901 Gossypium hirsutum HOM05D005723 ORTHO05D005968 5.4e-29 132.5 78 82.1
BolC3t15180H Brassica oleracea HOM05D005723 ORTHO05D005968 1.7e-22 110.9 77 74.0
FAN09G1257 Fragaria x ananassa HOM05D005723 ORTHO05D005968 5.4e-21 105.9 140 51.4
vmacro09121 Vaccinium macrocarpon HOM05D005723 ORTHO05D005968 2.7e-20 103.6 75 68.0
Haze_19995 Corylus avellana HOM05D005723 ORTHO05D005968 3.0e-19 100.1 103 56.3
BcaC05g26057 Brassica carinata HOM05D005723 ORTHO05D005968 6.9e-16 89.0 63 69.8
MCO15G614 Micromonas commoda HOM05D005723 ORTHO05D005968 3.8e-14 83.2 119 34.5
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 3.8e-06 56.6 106 33.0
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.8e-06 56.6 110 34.5
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 4.9e-06 56.2 108 32.4
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 6.5e-06 55.8 116 29.3
Peaxi162Scf00006g00314 Petunia axillaris HOM05D000829 ORTHO05D000690 6.5e-06 55.8 159 27.7


User provided reference genes

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