Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 3.7e-112 408.3 218 100.0
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 6.0e-86 321.2 218 77.5
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.4e-74 283.5 212 71.7
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.4e-74 283.5 187 79.7
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.8e-74 283.1 218 71.1
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.8e-74 283.1 218 71.1
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.8e-74 283.1 218 71.1
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 3.1e-74 282.3 211 72.5
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.9e-74 280.8 212 70.3
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 9.9e-73 277.3 212 68.9
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.4e-55 219.5 190 66.8
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 7.1e-55 218.0 220 58.6
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 1.2e-54 217.2 192 63.5
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.3e-53 213.0 216 60.2
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.1e-52 210.7 191 67.5
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 2.5e-52 209.5 212 58.5
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 3.3e-52 209.1 188 65.4
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 7.4e-52 208.0 186 65.1
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 3.1e-50 202.6 191 63.4
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 6.9e-50 201.4 188 60.6
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 2.6e-49 199.5 191 62.8
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 2.2e-48 196.4 217 57.1
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 2.9e-48 196.1 209 53.6
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 2.9e-48 196.1 191 59.7
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.8e-48 195.7 191 64.4
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.8e-48 195.7 188 60.6
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 3.8e-48 195.7 210 58.1
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.9e-48 195.3 188 60.6
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 6.5e-48 194.9 188 61.7
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 6.5e-48 194.9 217 56.7
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 8.4e-48 194.5 187 57.2
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.4e-47 193.7 188 61.2
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.4e-47 193.7 188 60.1
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 1.6e-46 190.3 223 59.2
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.1e-46 189.9 186 56.5
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.5e-46 189.1 186 63.4
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 6.0e-46 188.3 206 56.3
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.9e-45 185.7 186 62.4
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 2.5e-44 183.0 191 57.6
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.0e-40 171.0 188 58.0
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.7e-40 170.2 191 55.0
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 3.8e-40 169.1 187 54.0
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 6.5e-40 168.3 205 51.2
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.1e-39 167.5 203 51.2
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.9e-39 166.8 227 50.2
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 3.2e-39 166.0 168 58.9
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 7.2e-39 164.9 188 53.7
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 9.3e-39 164.5 194 51.5
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.2e-38 164.1 192 51.6
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 1.2e-38 164.1 187 53.5
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.3e-37 159.8 187 50.8
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 3.0e-37 159.5 211 47.9
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 3.9e-37 159.1 189 50.3
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 8.7e-37 157.9 194 51.0
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 3.3e-36 156.0 222 45.9
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 3.3e-36 156.0 189 49.7
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 4.3e-36 155.6 193 50.3
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 5.7e-36 155.2 195 51.3
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 7.4e-36 154.8 189 49.2
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 1.3e-35 154.1 216 48.1
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.3e-35 154.1 195 50.8
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 1.3e-35 154.1 196 50.5
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.6e-35 153.7 210 47.6
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.6e-35 153.7 185 53.0
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 2.8e-35 152.9 188 52.7
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.8e-35 152.1 193 50.3
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 1.1e-34 151.0 189 50.3
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 2.4e-34 149.8 194 50.5
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 3.1e-34 149.4 218 50.0
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.5e-33 147.1 185 47.6
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 2.0e-33 146.7 137 59.9
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 2.0e-33 146.7 215 46.0
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 2.6e-33 146.4 188 51.6
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 2.6e-33 146.4 185 49.7
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.6e-33 146.4 194 49.0
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.4e-33 146.0 192 50.0
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 5.9e-33 145.2 185 51.4
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 5.9e-33 145.2 191 48.2
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 5.9e-33 145.2 191 46.6
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 7.7e-33 144.8 194 46.9
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.3e-32 144.1 159 56.6
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.3e-32 144.1 185 48.6
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.7e-32 143.7 191 48.2
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 2.2e-32 143.3 194 49.0
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 2.2e-32 143.3 194 49.0
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 2.2e-32 143.3 188 50.0
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 2.2e-32 143.3 216 44.0
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.9e-32 142.9 225 43.1
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 5.0e-32 142.1 187 49.7
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 6.5e-32 141.7 189 50.3
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 8.5e-32 141.4 185 50.8
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.9e-31 140.2 205 46.8
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.2e-31 139.4 187 48.7
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.2e-31 139.4 196 48.0
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 3.2e-31 139.4 198 45.5
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 7.2e-31 138.3 228 42.5
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.2e-30 137.5 191 49.2
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.6e-30 137.1 202 45.5
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 2.1e-30 136.7 187 47.1
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 2.7e-30 136.3 204 45.1
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 3.6e-30 136.0 199 47.7
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 4.6e-30 135.6 158 53.2
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 6.1e-30 135.2 217 44.7
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 7.9e-30 134.8 204 45.1
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 1.0e-29 134.4 224 42.4
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.4e-29 134.0 198 47.0
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 3.9e-29 132.5 228 41.7
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 6.7e-29 131.7 191 46.6
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 8.8e-29 131.3 197 47.2
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 8.8e-29 131.3 197 47.2
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 8.8e-29 131.3 191 44.0
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 8.8e-29 131.3 199 45.7
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-28 131.0 198 47.0
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.1e-28 131.0 190 48.9
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.4e-28 129.0 187 47.1
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 5.7e-28 128.6 152 51.3
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 5.7e-28 128.6 133 57.1
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 1.3e-27 127.5 224 42.0
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 1.7e-27 127.1 200 44.0
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 2.8e-27 126.3 219 42.9
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 3.7e-27 125.9 202 44.1
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 1.1e-26 124.4 186 45.2
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.4e-26 124.0 187 45.5
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.4e-26 124.0 187 45.5
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 2.4e-26 123.2 231 42.0
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 5.3e-26 122.1 194 42.8
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 6.9e-26 121.7 189 42.3
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 9.1e-26 121.3 194 42.3
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-25 120.9 188 43.1
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 2.0e-25 120.2 185 43.8
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 2.6e-25 119.8 118 58.5
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.4e-25 119.4 169 45.6
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 3.4e-25 119.4 188 43.1
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 5.9e-25 118.6 187 41.7
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 7.7e-25 118.2 178 45.5
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.3e-24 117.5 193 43.0
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.7e-24 117.1 192 41.7
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 2.2e-24 116.7 194 40.7
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 5.0e-24 115.5 147 50.3
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 5.0e-24 115.5 189 44.4
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 6.5e-24 115.2 192 40.6
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 6.5e-24 115.2 190 41.1
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 8.5e-24 114.8 189 40.7
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 1.1e-23 114.4 191 40.8
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.1e-23 114.4 193 41.5
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-23 113.6 188 40.4
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.2e-23 112.8 192 43.8
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 7.2e-23 111.7 142 50.0
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 9.4e-23 111.3 187 39.0
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 9.4e-23 111.3 193 40.4
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 2.1e-22 110.2 188 42.0
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 2.1e-22 110.2 186 41.9
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.1e-22 110.2 189 40.7
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 2.7e-22 109.8 183 43.2
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 3.6e-22 109.4 197 39.6
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 1.0e-21 107.8 142 48.6
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 1.4e-21 107.5 192 39.6
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.4e-21 107.5 193 38.9
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 6.7e-21 105.1 194 39.2
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 8.8e-21 104.8 183 41.5
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 8.8e-21 104.8 119 52.1
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 7.4e-20 101.7 149 43.0
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-19 100.9 180 39.4
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 9.1e-18 94.7 129 45.7
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 4.5e-17 92.4 129 44.2
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.7e-16 90.5 168 39.3
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 2.2e-16 90.1 171 37.4
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.9e-16 89.7 273 30.0
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 6.5e-16 88.6 154 39.6
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.9e-15 87.0 193 38.3
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-14 84.0 189 36.5
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 5.2e-13 79.0 90 47.8
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 8.8e-13 78.2 187 34.8
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-12 77.4 187 34.2
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.5e-12 77.4 187 34.2
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 3.3e-12 76.3 187 33.7
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.7e-12 75.5 78 56.4
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 7.5e-12 75.1 187 34.2
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 2.8e-11 73.2 192 34.4
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 6.3e-11 72.0 195 33.3
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 1.4e-10 70.9 212 31.1
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 9.1e-10 68.2 191 34.0
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 7.7e-09 65.1 67 53.7
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 5.0e-08 62.4 134 38.1
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 8.0e-06 55.1 142 31.0


User provided reference genes

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