Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 1.3e-85 319.7 163 100.0
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 1.3e-82 309.7 163 94.5
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 5.1e-82 307.8 163 93.3
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 3.1e-79 298.5 163 91.4
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 5.3e-79 297.7 163 90.2
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.3e-79 297.7 163 90.2
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.3e-79 297.7 163 90.2
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.3e-79 297.7 163 90.2
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.3e-79 297.7 163 90.2
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 5.3e-79 297.7 163 90.2
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 6.5e-77 290.8 160 90.0
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 4.2e-76 288.1 158 88.6
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 6.1e-75 284.3 160 88.1
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.3e-74 283.1 158 86.1
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.9e-73 279.3 160 83.8
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 1.9e-73 279.3 158 84.8
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 2.2e-72 275.8 160 83.1
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 4.8e-72 274.6 160 82.5
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 4.8e-72 274.6 160 83.8
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 6.3e-72 274.2 155 83.9
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 1.1e-71 273.5 158 84.2
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.8e-71 272.7 160 83.8
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 2.4e-71 272.3 160 82.5
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 2.4e-71 272.3 155 83.2
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 3.1e-71 271.9 158 83.5
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 3.1e-71 271.9 160 81.9
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 3.1e-71 271.9 160 83.8
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 4.1e-71 271.6 160 83.1
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 4.1e-71 271.6 160 83.1
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 4.1e-71 271.6 160 82.5
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 5.3e-71 271.2 155 82.6
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 5.3e-71 271.2 157 82.8
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 6.9e-71 270.8 160 83.8
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 9.0e-71 270.4 157 81.5
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 9.0e-71 270.4 155 83.9
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 9.0e-71 270.4 160 81.9
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.2e-70 270.0 153 83.7
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.2e-70 270.0 153 83.7
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 1.2e-70 270.0 160 82.5
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 4.5e-70 268.1 155 83.2
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.5e-70 268.1 160 82.5
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 5.9e-70 267.7 157 82.2
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 1.0e-69 266.9 160 80.6
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 2.2e-69 265.8 160 80.0
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 3.8e-69 265.0 157 83.4
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 3.8e-69 265.0 158 79.1
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 1.4e-68 263.1 158 81.6
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 1.4e-68 263.1 154 83.1
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.5e-68 262.3 157 79.0
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 1.6e-67 259.6 160 78.1
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.6e-67 259.6 156 80.1
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.1e-67 259.2 157 78.3
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 2.7e-67 258.8 154 81.2
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.0e-66 256.9 160 76.2
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.8e-66 256.1 157 79.6
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 3.9e-66 255.0 160 76.2
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 3.9e-66 255.0 160 76.2
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.9e-66 255.0 158 76.6
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 3.9e-66 255.0 160 77.5
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 8.8e-66 253.8 157 78.3
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 77.2
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 77.2
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.1e-65 253.4 160 75.0
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 1.5e-65 253.1 160 75.6
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 1.5e-65 253.1 160 78.8
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.5e-65 253.1 160 75.0
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.5e-65 253.1 160 75.0
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 2.5e-65 252.3 157 77.7
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 3.3e-65 251.9 155 78.7
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 9.7e-65 250.4 160 74.4
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 9.7e-65 250.4 160 76.9
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 1.3e-64 250.0 158 77.2
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.3e-64 250.0 158 75.3
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.7e-64 249.6 160 73.8
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 1.7e-64 249.6 157 76.4
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 2.8e-64 248.8 157 77.1
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 3.7e-64 248.4 158 74.7
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 4.8e-64 248.1 161 74.5
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 4.8e-64 248.1 161 74.5
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 4.8e-64 248.1 161 74.5
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 4.8e-64 248.1 161 74.5
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 4.8e-64 248.1 161 74.5
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 4.8e-64 248.1 157 76.4
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 4.8e-64 248.1 161 73.9
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 6.3e-64 247.7 160 75.6
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 8.2e-64 247.3 163 73.0
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 8.2e-64 247.3 160 75.6
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 1.1e-63 246.9 158 75.3
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 141 84.4
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 3.1e-63 245.4 160 73.1
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 4.1e-63 245.0 157 74.5
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 6.9e-63 244.2 160 72.5
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 6.9e-63 244.2 155 74.2
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 6.9e-63 244.2 154 76.0
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 6.9e-63 244.2 154 76.0
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 9.1e-63 243.8 161 73.3
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 9.1e-63 243.8 161 73.3
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 9.1e-63 243.8 161 73.3
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 1.2e-62 243.4 160 75.0
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 1.5e-62 243.0 155 73.5
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 1.5e-62 243.0 154 77.3
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 2.0e-62 242.7 159 75.5
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 2.0e-62 242.7 159 75.5
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 2.0e-62 242.7 158 73.4
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 1.3e-61 240.0 157 71.3
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 2.9e-61 238.8 136 84.6
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 3.8e-61 238.4 153 71.9
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 8.5e-61 237.3 245 54.7
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 1.1e-60 236.9 154 75.3
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 1.9e-60 236.1 209 59.8
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 3.2e-60 235.3 160 70.6
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 7.4e-57 224.2 123 90.2
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 9.7e-57 223.8 144 75.7
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 9.7e-57 223.8 143 74.1
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 4.8e-56 221.5 146 71.9
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 8.2e-56 220.7 154 69.5
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 4.5e-54 214.9 125 80.8
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.7e-53 213.0 161 65.2
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 8.5e-53 210.7 144 68.1
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 2.7e-51 205.7 144 66.0
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.4e-50 203.4 162 61.1
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 1.7e-48 196.4 123 77.2
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 1.1e-47 193.7 301 41.2
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 2.4e-47 192.6 199 52.3
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 2.6e-46 189.1 111 79.3
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 1.7e-45 186.4 158 57.0
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 3.8e-45 185.3 187 52.9
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.8e-42 176.4 144 65.3
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.6e-38 163.3 98 83.7
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 4.5e-38 161.8 113 72.6
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 1.6e-35 153.3 101 73.3
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.4e-34 150.2 133 57.1
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 3.7e-32 142.1 154 46.8
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.0e-29 134.0 149 46.3
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 3.8e-29 132.1 149 45.6
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 9.5e-28 127.5 77 76.6
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 1.2e-27 127.1 145 53.8
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 6.1e-27 124.8 145 47.6
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 5.2e-26 121.7 146 41.8
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 2.6e-25 119.4 145 42.8
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 6.3e-24 114.8 132 43.2
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 8.3e-24 114.4 109 56.9
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 8.3e-24 114.4 109 56.9
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 1.8e-23 113.2 78 69.2
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.1e-23 112.1 77 70.1
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 2.0e-22 109.8 84 64.3
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 3.5e-22 109.0 77 68.8
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.0e-21 105.1 77 66.2
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 7.3e-20 101.3 101 57.4
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 1.2e-19 100.5 133 39.8
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 2.3e-18 96.3 78 64.1
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 2.8e-11 72.8 147 36.7
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 6.8e-10 68.2 69 53.6
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 2.0e-09 66.6 69 52.2
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 3.2e-07 59.3 49 63.3


User provided reference genes

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