Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 1.2e-203 713.0 356 100.0
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 4.9e-186 654.4 356 91.6
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 4.4e-179 631.3 358 88.3
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 2.3e-167 592.4 351 82.9
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 8.1e-165 583.9 356 80.6
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 1.4e-164 583.2 356 80.3
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 6.8e-164 580.9 356 80.3
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 2.6e-163 578.9 356 80.1
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.4e-161 573.2 352 80.1
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 3.5e-160 568.5 351 78.9
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 2.8e-157 558.9 352 77.3
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 2.2e-154 549.3 351 75.5
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 4.9e-154 548.1 352 77.3
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 8.4e-154 547.4 351 74.4
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 1.4e-153 546.6 351 75.8
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 2.4e-153 545.8 352 76.7
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 2.4e-153 545.8 359 74.1
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 5.4e-153 544.7 360 76.1
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 2.7e-152 542.3 351 74.9
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 3.5e-152 542.0 352 75.6
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 4.6e-152 541.6 352 76.1
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 7.8e-152 540.8 351 75.2
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 1.0e-151 540.4 351 74.6
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 1.0e-151 540.4 360 73.9
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 3.0e-151 538.9 359 74.1
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 1.5e-150 536.6 351 74.9
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 3.3e-150 535.4 354 73.2
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 1.3e-149 533.5 351 73.8
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 1.6e-149 533.1 351 72.9
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 2.8e-149 532.3 351 73.2
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 8.1e-149 530.8 352 74.4
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 1.8e-148 529.6 351 72.4
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 2.4e-148 529.3 351 73.5
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 2.0e-147 526.2 353 72.0
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 2.6e-147 525.8 351 73.5
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 7.6e-147 524.2 329 77.8
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 1.3e-146 523.5 351 71.2
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 1.7e-146 523.1 351 70.9
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 3.2e-145 518.8 351 70.4
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 7.1e-145 517.7 336 75.0
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 1.2e-144 516.9 351 69.8
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 1.6e-144 516.5 352 71.6
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 3.5e-144 515.4 352 75.3
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 3.5e-144 515.4 351 69.8
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 2.3e-143 512.7 358 72.6
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 8.7e-143 510.8 352 72.7
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 2.5e-142 509.2 351 71.8
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 4.3e-142 508.4 352 70.5
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 4.3e-142 508.4 334 72.8
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 1.3e-141 506.9 354 72.0
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 6.2e-141 504.6 404 64.9
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 1.8e-140 503.1 353 70.8
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 2.6e-139 499.2 353 70.8
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 1.3e-138 496.9 353 69.4
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 3.8e-138 495.4 352 71.3
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 6.4e-138 494.6 353 70.5
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 6.4e-138 494.6 328 76.5
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 3.2e-137 492.3 329 72.6
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 4.2e-137 491.9 342 71.1
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 4.2e-137 491.9 356 70.8
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 1.2e-136 490.3 352 68.8
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 1.2e-136 490.3 358 68.4
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.0e-135 487.3 359 68.5
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 3.9e-135 485.3 289 79.2
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 5.1e-135 485.0 352 68.2
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 8.7e-135 484.2 338 69.8
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.5e-134 483.4 359 68.5
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 9.6e-134 480.7 353 68.6
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 1.6e-133 479.9 353 68.6
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 2.8e-133 479.2 354 68.6
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 2.8e-133 479.2 318 73.3
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 3.7e-133 478.8 353 68.0
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 6.2e-133 478.0 311 72.7
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 1.8e-132 476.5 315 72.4
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 4.0e-132 475.3 351 68.1
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 3.4e-131 472.2 309 74.8
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 7.6e-131 471.1 315 72.7
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 7.6e-131 471.1 354 64.7
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 2.5e-129 466.1 374 65.5
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 6.7e-127 458.0 354 64.1
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 2.5e-126 456.1 351 64.7
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 3.3e-126 455.7 289 75.4
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 1.3e-125 453.8 309 72.8
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 2.8e-125 452.6 384 63.0
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 6.2e-125 451.4 354 64.7
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 1.4e-124 450.3 354 64.7
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 1.8e-124 449.9 354 63.6
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 6.9e-124 448.0 272 79.0
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 9.0e-124 447.6 355 63.7
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 2.0e-123 446.4 299 71.6
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 2.6e-123 446.0 299 71.6
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 2.6e-123 446.0 340 65.9
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 7.6e-123 444.5 299 71.2
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 1.0e-122 444.1 299 71.2
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 1.0e-122 444.1 299 71.2
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 6.5e-122 441.4 299 71.2
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 1.1e-121 440.7 354 64.1
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 1.1e-121 440.7 300 70.3
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 3.2e-121 439.1 299 70.2
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 4.2e-121 438.7 354 63.6
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 4.2e-121 438.7 298 70.5
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 7.2e-121 438.0 299 70.6
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 1.2e-120 437.2 353 63.7
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 1.9e-118 429.9 354 59.9
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 1.6e-117 426.8 299 69.6
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 2.2e-117 426.4 367 59.4
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 3.7e-117 425.6 359 59.6
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 2.9e-114 416.0 333 63.1
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 7.4e-110 401.4 315 65.4
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 3.7e-109 399.1 299 65.6
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 1.5e-107 393.7 363 57.9
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 2.2e-106 389.8 230 78.7
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 3.0e-103 379.4 299 63.5
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 2.0e-102 376.7 313 60.7
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 9.1e-100 367.9 318 58.8
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 1.7e-98 363.6 314 60.5
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 1.9e-97 360.1 324 54.9
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 4.7e-96 355.5 303 59.4
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 1.4e-95 354.0 266 67.7
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 2.3e-95 353.2 302 59.3
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 6.7e-95 351.7 300 55.7
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.3e-93 347.4 312 58.0
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 1.5e-89 334.0 357 49.9
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 6.8e-87 325.1 289 59.2
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 9.8e-86 321.2 204 73.5
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 9.2e-76 288.1 306 46.7
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 1.8e-63 247.3 323 40.9
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 2.3e-63 246.9 156 75.0
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 2.0e-62 243.8 144 80.6
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 3.5e-59 233.0 267 47.6
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 4.7e-56 222.6 284 50.0
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 6.0e-51 205.7 155 63.9
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 1.7e-45 187.6 200 51.0
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 3.7e-45 186.4 148 60.8
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 4.6e-43 179.5 142 62.7
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 5.1e-42 176.0 293 38.6
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 1.1e-41 174.9 245 41.6
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 4.7e-40 169.5 319 35.1
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 5.2e-39 166.0 120 65.8
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 3.4e-38 163.3 153 52.3
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 9.9e-30 135.2 107 63.6
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 4.6e-27 126.3 306 34.0
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 5.6e-25 119.4 80 72.5
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 1.6e-19 101.3 95 50.5
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 5.6e-17 92.8 62 66.1
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 4.0e-15 86.7 161 35.4
Cc11_g01140 Coffea canephora HOM05D004767 ORTHO05D005674 1.0e-13 82.0 45 80.0
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 1.0e-13 82.0 58 67.2
Actinidia09820 Actinidia chinensis HOM05D004767 ORTHO05D005674 2.9e-13 80.5 57 64.9
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 8.4e-13 79.0 54 66.7
GSVIVG01020113001 Vitis vinifera HOM05D004767 ORTHO05D005674 1.2e-11 75.1 53 73.6
Cc11_g01130 Coffea canephora HOM05D004767 ORTHO05D005674 8.7e-10 68.9 72 51.4
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 1.9e-09 67.8 148 29.7
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 1.3e-08 65.1 148 28.4
RcHm_v2.0_Chr5g0032061 Rosa chinensis HOM05D004767 ORTHO05D005674 6.3e-08 62.8 33 78.8
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 2.4e-07 60.8 146 26.7
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 2.0e-06 57.8 260 21.9
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 4.5e-06 56.6 142 28.2
SHI13909 Sapria himalayana HOM05D003913 ORTHO05D004803 4.5e-06 56.6 153 26.1
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 5.9e-06 56.2 155 23.9
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 5.9e-06 56.2 147 25.2
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 7.6e-06 55.8 147 25.2
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.0e-05 55.5 138 29.0


User provided reference genes

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