Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 3.1e-298 1027.7 515 100.0
MD12G1063100 Malus domestica HOM05D008447 ORTHO05D010638 8.7e-261 903.3 512 87.5
Cfa016881 Carpinus fangiana HOM05D008447 ORTHO05D010638 3.3e-220 768.5 504 76.2
Thecc.05G165700 Theobroma cacao HOM05D008447 ORTHO05D010638 1.4e-210 736.5 513 73.9
COL.COLO4_28736 Corchorus olitorius HOM05D008447 ORTHO05D010638 3.2e-207 725.3 513 72.1
Ciclev10004787m.g Citrus clementina HOM05D008447 ORTHO05D010638 2.1e-206 722.6 513 72.3
Dinv18105 Davidia involucrata HOM05D008447 ORTHO05D010638 2.7e-206 722.2 513 71.7
Atru.chr1.942 Acer truncatum HOM05D008447 ORTHO05D010638 9.8e-204 713.8 493 72.2
TAR369G0905 Trochodendron aralioides HOM05D008447 ORTHO05D010638 3.5e-201 705.3 501 72.3
CANSAT80G0811 Cannabis sativa HOM05D008447 ORTHO05D010638 4.5e-201 704.9 512 70.3
CANSAT80G2072 Cannabis sativa HOM05D008447 ORTHO05D010638 7.7e-201 704.1 512 69.9
Gorai.002G037200 Gossypium raimondii HOM05D008447 ORTHO05D010638 8.0e-198 694.1 513 70.0
GSVIVG01033352001 Vitis vinifera HOM05D008447 ORTHO05D010638 4.4e-196 688.3 467 72.8
Haze_19941 Corylus avellana HOM05D008447 ORTHO05D010638 2.8e-195 685.6 500 70.8
Nn7g36103 Nelumbo nucifera HOM05D008447 ORTHO05D010638 1.9e-183 646.4 483 67.5
Migut.J01799 Erythranthe guttata HOM05D008447 ORTHO05D010638 3.1e-181 639.0 464 69.4
Aqoxy1G00302 Aquilegia oxysepala HOM05D008447 ORTHO05D010638 4.0e-181 638.6 485 66.0
Rhsim04G0099000 Rhododendron simsii HOM05D008447 ORTHO05D010638 4.0e-181 638.6 575 59.7
PGR004G0530 Punica granatum HOM05D008447 ORTHO05D010638 8.3e-179 630.9 484 66.5
PSO384G3680 Papaver somniferum HOM05D008447 ORTHO05D010638 1.1e-178 630.6 512 61.5
Gohir.D01G027950 Gossypium hirsutum HOM05D008447 ORTHO05D010638 3.9e-168 595.5 481 65.5
Sopen05g007620 Solanum pennellii HOM05D008447 ORTHO05D010638 1.9e-162 576.6 487 61.0
PGSC0003DMG400028389 Solanum tuberosum HOM05D008447 ORTHO05D010638 3.2e-162 575.9 477 61.4
Solyc05g012800.1 Solanum lycopersicum HOM05D008447 ORTHO05D010638 2.3e-160 569.7 491 59.7
Cpa.g.sc85.118 Carica papaya HOM05D008447 ORTHO05D010638 3.0e-160 569.3 503 61.4
HPP92_023777 Vanilla planifolia HOM05D008447 ORTHO05D010638 3.1e-157 559.3 478 59.4
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 4.8e-150 535.4 381 70.6
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 3.8e-147 525.8 404 68.1
Peaxi162Scf00285g00227 Petunia axillaris HOM05D008447 ORTHO05D010638 6.4e-147 525.0 484 58.9
Nitab4.5_0008022g0020 Nicotiana tabacum HOM05D008447 ORTHO05D010638 2.1e-142 510.0 512 54.1
Nitab4.5_0000016g0020 Nicotiana tabacum HOM05D008447 ORTHO05D010638 1.1e-133 481.1 512 52.0
SMO367G0387 Selaginella moellendorffii HOM05D008447 ORTHO05D010638 1.4e-125 454.1 476 48.9
SMO275G0044 Selaginella moellendorffii HOM05D008447 ORTHO05D010638 5.3e-125 452.2 476 48.5
Mapoly0099s0027 Marchantia polymorpha HOM05D008447 ORTHO05D010638 9.0e-125 451.4 479 49.7
Pp3c10_15450 Physcomitrium patens HOM05D008447 ORTHO05D010638 1.9e-122 443.7 475 48.6
CSS0040904 Camellia sinensis var. sinensis HOM05D008447 ORTHO05D010638 8.2e-118 428.3 410 56.3
AagrBONN_evm.TU.Sc2ySwM_228.434 Anthoceros agrestis HOM05D008447 ORTHO05D010638 2.6e-116 423.3 445 49.4
MBI01_g36431_MAGBIO Magnolia biondii HOM05D008447 ORTHO05D010638 6.1e-113 412.1 386 59.1
Actinidia17252 Actinidia chinensis HOM05D008447 ORTHO05D010638 2.3e-112 410.2 341 61.6
Hma1.2p1_0856F.1_g229060 Hydrangea macrophylla HOM05D008447 ORTHO05D010638 1.4e-101 374.4 301 65.4
PRCOL_00000676 Prasinoderma coloniale HOM05D008447 ORTHO05D010638 8.6e-75 285.4 515 36.7
RcHm_v2.0_Chr3g0480711 Rosa chinensis HOM05D008447 ORTHO05D010638 1.4e-72 278.1 158 84.2
QL07p022618 Quercus lobata HOM05D008447 ORTHO05D010638 2.3e-72 277.3 698 31.9
QL07p022609 Quercus lobata HOM05D008447 ORTHO05D010638 2.0e-68 264.2 182 70.3
RcHm_v2.0_Chr3g0480721 Rosa chinensis HOM05D008447 ORTHO05D010638 5.6e-50 203.0 127 85.0
CBR_g675 Chara braunii HOM05D008447 ORTHO05D010638 2.0e-47 194.5 227 43.2
Actinidia17253 Actinidia chinensis HOM05D008447 ORTHO05D010638 5.3e-32 143.3 95 71.6
Haze_19939 Corylus avellana HOM05D008447 ORTHO05D010638 1.6e-25 121.7 76 76.3
CSS0021541 Camellia sinensis var. sinensis HOM05D008447 ORTHO05D010638 5.5e-21 106.7 68 75.0
SEGI_40265 Sequoiadendron giganteum HOM05D008447 ORTHO05D010638 9.6e-18 95.9 100 47.0
SEGI_28051 Sequoiadendron giganteum HOM05D008447 ORTHO05D010638 4.1e-16 90.5 71 63.4
MBI08_g35877_MAGBIO Magnolia biondii HOM05D008447 ORTHO05D010638 1.2e-15 89.0 63 61.9
CBR_g669 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-11 73.9 121 35.5
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.2e-09 68.2 268 27.2
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 4.8e-09 67.0 276 27.2
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 8.2e-09 66.2 277 27.8
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 8.2e-09 66.2 268 26.9
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 8.2e-09 66.2 276 26.8
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 8.2e-09 66.2 305 26.6
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 1.1e-08 65.9 249 26.1
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 1.1e-08 65.9 276 26.4
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 1.1e-08 65.9 276 26.4
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 1.1e-08 65.9 270 26.3
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 2.4e-08 64.7 268 24.6
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 2.4e-08 64.7 269 26.0
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.1e-08 64.3 276 26.8
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.1e-08 64.3 276 26.8
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.1e-08 64.3 276 26.8
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 3.1e-08 64.3 270 25.6
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 4.1e-08 63.9 272 26.5
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 4.1e-08 63.9 271 26.2
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 4.1e-08 63.9 264 26.9
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 4.1e-08 63.9 276 26.8
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 5.3e-08 63.5 279 27.2
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 6.9e-08 63.2 271 26.2
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 6.9e-08 63.2 276 26.4
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 6.9e-08 63.2 276 26.1
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 6.9e-08 63.2 270 25.6
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 9.0e-08 62.8 276 26.4
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 9.0e-08 62.8 281 25.3
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 1.2e-07 62.4 276 26.1
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.2e-07 62.4 247 23.9
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 1.5e-07 62.0 277 26.4
CBR_g671 Chara braunii HOM05D008447 ORTHO05D010638 1.5e-07 62.0 52 55.8
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 1.5e-07 62.0 247 26.3
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 1.5e-07 62.0 267 24.3
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.0e-07 61.6 275 26.2
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 2.0e-07 61.6 276 26.4
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 2.6e-07 61.2 273 26.0
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 2.6e-07 61.2 277 26.0
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 2.6e-07 61.2 277 26.0
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 4.5e-07 60.5 272 26.1
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 4.5e-07 60.5 271 25.8
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 5.9e-07 60.1 270 24.1
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 5.9e-07 60.1 271 25.5
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 7.7e-07 59.7 272 26.5
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 7.7e-07 59.7 271 24.4
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 7.7e-07 59.7 279 26.2
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 1.7e-06 58.5 277 26.0
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 1.7e-06 58.5 246 24.0
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 1.7e-06 58.5 278 25.9
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 1.7e-06 58.5 278 25.2
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 1.7e-06 58.5 282 25.2
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 3.8e-06 57.4 273 26.0
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 6.5e-06 56.6 272 25.4


User provided reference genes

Program Settings