Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 1.0e-57 226.5 109 100.0
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 3.6e-55 218.0 109 94.5
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 2.0e-53 212.2 109 92.7
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 6.3e-52 207.2 99 98.0
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 1.2e-50 203.0 100 95.0
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 2.0e-50 202.2 102 94.1
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 2.6e-50 201.8 109 86.2
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.6e-50 201.8 100 94.0
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 1.3e-49 199.5 109 85.3
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.3e-49 199.5 100 93.0
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.9e-49 198.4 96 95.8
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 5.0e-49 197.6 109 84.4
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 1.9e-48 195.7 109 83.5
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 3.2e-48 194.9 109 83.5
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 1.6e-47 192.6 106 83.0
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 8.0e-47 190.3 107 81.3
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 3.9e-46 188.0 106 82.1
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 1.5e-45 186.0 105 81.0
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 3.3e-45 184.9 110 81.8
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 3.3e-45 184.9 97 85.6
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 9.7e-45 183.3 110 81.8
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 1.3e-44 183.0 107 78.5
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 1.7e-44 182.6 111 76.6
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.7e-44 182.6 106 81.1
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 2.2e-44 182.2 106 79.2
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 2.8e-44 181.8 108 78.7
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 8.2e-44 180.3 96 85.4
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 1.4e-43 179.5 109 78.9
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.8e-43 179.1 106 76.4
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 2.4e-43 178.7 105 76.2
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 3.1e-43 178.3 109 77.1
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 3.1e-43 178.3 100 80.0
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 5.3e-43 177.6 111 78.4
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 9.1e-43 176.8 110 78.2
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 9.1e-43 176.8 110 80.0
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.6e-42 176.0 97 79.4
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 2.0e-42 175.6 97 81.4
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.6e-42 175.3 109 75.2
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.5e-42 174.9 109 76.1
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.5e-42 174.9 109 76.1
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 3.5e-42 174.9 96 83.3
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 5.9e-42 174.1 100 78.0
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 7.7e-42 173.7 96 81.2
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 1.0e-41 173.3 105 77.1
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.0e-41 173.3 110 77.3
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.0e-41 173.3 110 77.3
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.3e-41 172.9 109 72.5
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.1e-40 169.9 105 75.2
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 1.1e-40 169.9 94 79.8
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 1.9e-40 169.1 95 83.2
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 1.9e-40 169.1 104 75.0
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 4.2e-40 167.9 82 93.9
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 5.5e-40 167.5 106 72.6
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 7.2e-40 167.2 96 79.2
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 7.2e-40 167.2 107 74.8
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 2.7e-39 165.2 108 71.3
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 2.7e-39 165.2 96 79.2
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.7e-39 165.2 96 78.1
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 3.6e-39 164.9 95 77.9
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 4.7e-39 164.5 109 71.6
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 6.1e-39 164.1 95 76.8
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 6.1e-39 164.1 90 84.4
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 6.1e-39 164.1 102 72.5
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.0e-38 163.3 99 76.8
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.4e-38 162.9 105 75.2
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.4e-38 162.9 97 75.3
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 1.4e-38 162.9 109 71.6
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 1.4e-38 162.9 96 76.0
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.8e-38 162.5 104 73.1
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 2.3e-38 162.2 109 70.6
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 4.0e-38 161.4 109 70.6
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 5.2e-38 161.0 103 73.8
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 5.2e-38 161.0 109 74.3
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 6.7e-38 160.6 103 72.8
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 6.7e-38 160.6 103 72.8
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 6.7e-38 160.6 99 75.8
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 8.8e-38 160.2 103 72.8
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 8.8e-38 160.2 96 77.1
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 8.8e-38 160.2 104 74.0
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 8.8e-38 160.2 104 74.0
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 1.2e-37 159.8 96 75.0
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 1.2e-37 159.8 96 75.0
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 1.2e-37 159.8 90 77.8
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 1.5e-37 159.5 96 75.0
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 1.5e-37 159.5 109 72.5
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 2.0e-37 159.1 103 72.8
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 2.0e-37 159.1 103 72.8
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 2.6e-37 158.7 104 72.1
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 2.6e-37 158.7 100 75.0
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.3e-37 158.3 103 71.8
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 3.3e-37 158.3 105 72.4
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 3.3e-37 158.3 96 72.9
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 4.4e-37 157.9 103 71.8
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 4.4e-37 157.9 103 71.8
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 4.4e-37 157.9 92 77.2
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 4.4e-37 157.9 100 75.0
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 4.4e-37 157.9 85 84.7
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 5.7e-37 157.5 96 74.0
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 5.7e-37 157.5 109 67.9
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 5.7e-37 157.5 94 75.5
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 5.7e-37 157.5 94 75.5
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 5.7e-37 157.5 103 71.8
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 7.5e-37 157.1 100 74.0
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 7.5e-37 157.1 100 74.0
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 7.5e-37 157.1 97 75.3
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 1.3e-36 156.4 96 75.0
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 1.3e-36 156.4 96 75.0
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 1.3e-36 156.4 103 71.8
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.3e-36 156.4 105 70.5
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.3e-36 156.4 100 74.0
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 1.7e-36 156.0 94 75.5
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 1.7e-36 156.0 103 71.8
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.7e-36 156.0 96 71.9
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.7e-36 156.0 93 73.1
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.2e-36 155.6 100 74.0
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 2.2e-36 155.6 106 68.9
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 2.8e-36 155.2 104 68.3
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 2.8e-36 155.2 104 68.3
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 3.7e-36 154.8 100 73.0
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.7e-36 154.8 95 74.7
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 1.4e-35 152.9 109 71.6
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 1.8e-35 152.5 97 72.2
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 3.1e-35 151.8 95 73.7
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 3.1e-35 151.8 95 73.7
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 3.1e-35 151.8 95 73.7
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 3.1e-35 151.8 95 73.7
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 3.1e-35 151.8 95 73.7
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.1e-35 151.8 106 65.1
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 5.3e-35 151.0 96 71.9
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 7.0e-35 150.6 106 65.1
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 9.1e-35 150.2 101 67.3
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 1.6e-34 149.4 96 70.8
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 1.6e-34 149.4 96 70.8
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.7e-34 148.7 98 71.4
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.0e-33 146.7 86 75.6
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 1.7e-33 146.0 97 71.1
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 6.5e-33 144.1 103 67.0
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 2.1e-31 139.0 104 66.3
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 2.3e-30 135.6 106 63.2
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 2.6e-29 132.1 106 62.3
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.4e-27 124.4 111 57.7
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 3.5e-26 121.7 90 61.1
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 4.2e-24 114.8 84 71.4
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 2.8e-23 112.1 55 89.1
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 2.8e-23 112.1 97 55.7
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 2.8e-23 112.1 95 56.8
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 4.9e-20 101.3 87 55.2
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 8.3e-20 100.5 69 65.2
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.2e-18 96.7 61 77.0
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 1.0e-17 93.6 59 72.9
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 7.3e-16 87.4 61 60.7
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 3.0e-14 82.0 73 49.3
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 9.8e-13 77.0 68 61.8
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 2.0e-10 69.3 90 42.2
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 4.3e-08 61.6 44 63.6
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 7.3e-08 60.8 48 62.5
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 8.0e-07 57.4 105 41.0
TAR623G0451 Trochodendron aralioides HOM05D004651 ORTHO05D005761 6.8e-06 54.3 49 53.1


User provided reference genes

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