Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 1.2e-129 466.5 236 100.0
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.6e-81 306.6 238 69.3
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 8.5e-70 267.7 239 62.3
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.4e-69 264.2 237 62.9
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 5.1e-67 258.5 246 60.2
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 3.0e-59 232.6 248 54.0
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 4.0e-59 232.3 240 55.8
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 9.7e-58 227.6 241 53.1
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 8.0e-52 208.0 237 51.1
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.0e-51 207.6 236 50.8
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 7.5e-50 201.4 240 47.9
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.7e-49 199.1 241 49.0
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 4.8e-49 198.7 223 49.3
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 5.4e-48 195.3 248 46.8
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 1.2e-47 194.1 244 50.4
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 1.2e-47 194.1 250 49.2
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 2.0e-47 193.4 244 46.7
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 1.7e-46 190.3 238 50.0
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 2.2e-46 189.9 213 50.2
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 6.5e-46 188.3 249 50.6
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 1.1e-45 187.6 236 47.9
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 2.5e-45 186.4 243 48.1
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 4.0e-43 179.1 231 47.6
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 8.8e-43 177.9 237 46.4
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 5.7e-42 175.3 221 47.5
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 9.8e-42 174.5 251 41.8
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 9.8e-42 174.5 246 47.2
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 3.7e-41 172.6 219 48.9
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 1.1e-40 171.0 254 46.5
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 1.8e-40 170.2 233 44.6
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 3.1e-40 169.5 257 44.7
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 4.1e-40 169.1 261 44.1
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 9.1e-40 167.9 248 44.0
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 9.1e-40 167.9 262 45.0
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 9.1e-40 167.9 244 42.6
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.7e-39 166.4 228 43.0
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 3.5e-39 166.0 255 42.4
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 4.5e-39 165.6 234 43.6
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 5.9e-39 165.2 234 45.7
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.9e-38 162.9 233 42.9
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 2.9e-38 162.9 221 45.7
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 6.6e-38 161.8 229 46.7
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 6.6e-38 161.8 243 42.0
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 6.6e-38 161.8 243 42.0
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 6.6e-38 161.8 253 41.1
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 1.1e-37 161.0 216 44.4
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 4.3e-37 159.1 206 45.6
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 7.2e-37 158.3 246 41.5
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 1.6e-36 157.1 219 46.6
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 1.6e-36 157.1 238 42.0
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.1e-36 156.8 237 44.7
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 2.1e-36 156.8 230 43.5
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.8e-36 156.4 221 45.2
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 4.7e-36 155.6 236 44.1
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.8e-35 153.7 224 43.8
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 1.8e-35 153.7 236 39.4
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 5.2e-35 152.1 233 42.5
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 6.8e-35 151.8 232 41.8
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 6.8e-35 151.8 233 42.5
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.2e-34 151.0 232 41.4
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 1.2e-34 151.0 215 43.3
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 2.0e-34 150.2 220 42.7
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 2.6e-34 149.8 242 40.1
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 3.4e-34 149.4 234 44.4
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 3.4e-34 149.4 235 42.6
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 4.4e-34 149.1 222 43.2
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 9.8e-34 147.9 222 44.1
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.3e-33 147.5 259 40.5
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.3e-33 147.5 242 39.7
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.3e-33 147.5 215 43.3
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 3.7e-33 146.0 210 40.5
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 4.9e-33 145.6 209 43.1
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 4.9e-33 145.6 209 43.5
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 6.4e-33 145.2 232 42.7
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 6.4e-33 145.2 256 37.5
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.1e-32 144.4 242 40.1
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.1e-32 144.4 215 42.8
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 1.1e-32 144.4 228 40.4
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 1.4e-32 144.1 221 41.2
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 1.8e-32 143.7 234 38.0
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 2.4e-32 143.3 236 37.3
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.1e-32 142.5 215 39.5
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.0e-32 141.7 246 39.8
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 9.2e-32 141.4 230 40.0
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.6e-31 140.6 245 38.8
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.6e-31 140.6 249 39.4
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.6e-31 140.6 212 42.5
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.6e-31 140.6 236 40.7
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 1.6e-31 140.6 229 38.4
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.0e-31 140.2 217 40.1
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 3.5e-31 139.4 234 41.9
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 3.5e-31 139.4 221 39.4
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.6e-31 139.0 236 37.7
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 5.9e-31 138.7 243 36.6
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 5.9e-31 138.7 244 38.1
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 7.8e-31 138.3 227 42.3
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 7.8e-31 138.3 226 41.2
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.3e-30 136.7 236 37.3
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 3.0e-30 136.3 245 39.2
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 3.9e-30 136.0 239 38.9
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 5.0e-30 135.6 232 40.5
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 6.6e-30 135.2 245 40.8
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 6.6e-30 135.2 234 37.2
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 6.6e-30 135.2 242 39.7
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 8.6e-30 134.8 249 38.2
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 8.6e-30 134.8 239 38.5
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.5e-29 134.0 232 37.9
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.5e-29 133.3 239 38.9
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.5e-29 133.3 232 37.5
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 5.6e-29 132.1 228 42.1
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.2e-28 131.0 204 42.2
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 2.1e-28 130.2 89 65.2
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 4.7e-28 129.0 219 37.4
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 6.2e-28 128.6 222 39.6
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 8.0e-28 128.3 224 37.5
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 1.4e-27 127.5 235 38.3
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 4.0e-27 125.9 205 39.0
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 6.8e-27 125.2 205 39.5
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.5e-26 124.0 206 38.8
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.5e-26 124.0 206 38.8
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 4.9e-25 119.0 207 39.1
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 4.9e-25 119.0 226 37.6
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 1.1e-24 117.9 222 35.1
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.1e-24 117.9 234 35.9
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.4e-24 117.5 208 38.5
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.4e-24 117.5 222 37.8
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 1.4e-24 117.5 207 37.7
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 1.4e-24 117.5 206 39.3
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.9e-24 117.1 222 34.7
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 3.2e-24 116.3 222 34.7
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 3.2e-24 116.3 222 34.7
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 9.2e-24 114.8 207 38.2
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 9.2e-24 114.8 234 34.2
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 9.2e-24 114.8 234 34.2
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 9.2e-24 114.8 207 37.7
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 2.0e-23 113.6 213 37.6
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.0e-23 113.6 215 40.0
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 2.7e-23 113.2 213 39.0
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 6.0e-23 112.1 207 37.2
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 1.3e-22 110.9 251 32.3
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 2.3e-22 110.2 253 35.6
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 3.0e-22 109.8 210 36.2
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 3.0e-22 109.8 210 36.2
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 3.9e-22 109.4 233 36.5
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 7.3e-21 105.1 208 36.5
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.6e-20 104.0 208 38.0
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 2.8e-20 103.2 205 36.6
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 5.2e-19 99.0 223 31.4
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 4.4e-18 95.9 241 32.4
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 4.9e-17 92.4 230 35.2
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 4.9e-17 92.4 230 35.2
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 8.3e-17 91.7 228 34.2
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 1.3e-14 84.3 210 33.8
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.9e-14 82.8 160 33.8
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 3.9e-14 82.8 160 33.8
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.1e-14 82.4 232 29.7
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.5e-13 80.9 151 35.8
FvH4_6g23250 Fragaria vesca HOM05D004075 ORTHO05D004538 1.9e-13 80.5 70 62.9
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 7.6e-10 68.6 55 50.9
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 3.7e-09 66.2 46 56.5
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 5.1e-06 55.8 70 45.7


User provided reference genes

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