Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2729.9 1381 100.0
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2645.9 1381 96.2
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2645.5 1381 96.0
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2626.3 1381 95.1
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2607.0 1381 94.1
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2602.8 1381 94.0
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2602.8 1381 94.1
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2602.8 1381 94.0
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2592.8 1408 92.4
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2560.8 1382 92.0
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2548.5 1382 91.9
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2541.1 1383 91.3
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2537.3 1398 91.0
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2535.4 1383 91.0
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2534.6 1385 90.4
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2532.3 1382 90.6
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2532.3 1382 90.2
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2528.8 1383 91.1
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2528.4 1382 91.1
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2528.1 1383 90.7
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2526.9 1385 90.3
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2523.0 1382 90.5
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2522.7 1383 91.3
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2521.5 1382 91.2
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2519.2 1385 90.8
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2519.2 1384 90.8
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2516.5 1383 89.8
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2515.3 1386 90.8
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2514.2 1383 90.2
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2512.3 1385 90.5
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2512.3 1384 90.4
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2510.7 1383 90.4
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2509.6 1383 90.4
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2508.8 1383 90.4
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2506.5 1383 90.1
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2505.3 1384 90.0
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2504.9 1383 89.7
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2504.6 1383 90.2
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2502.2 1384 90.0
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2501.9 1383 89.9
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2501.5 1382 90.4
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2500.7 1384 90.0
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2500.3 1382 89.9
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2500.3 1382 89.4
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2498.4 1383 89.9
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2496.8 1383 89.3
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2496.8 1382 90.0
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2495.7 1388 89.8
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2494.5 1388 89.8
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2492.2 1383 89.9
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2491.5 1384 89.2
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2491.1 1382 89.1
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2489.9 1398 88.6
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2489.1 1384 89.2
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2488.4 1384 88.9
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2486.8 1385 89.1
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2486.4 1384 89.2
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2485.3 1386 88.6
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2483.4 1382 89.1
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2482.2 1383 89.6
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2481.4 1382 89.0
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2479.9 1382 88.7
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2478.0 1383 88.6
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2476.8 1383 88.6
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2468.0 1382 89.3
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2467.2 1384 88.3
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2467.2 1384 88.3
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2457.2 1446 84.9
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2456.4 1382 89.0
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2453.7 1385 87.9
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2453.7 1383 87.6
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2450.6 1384 87.9
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2447.2 1335 90.7
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2441.0 1393 86.6
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2437.1 1383 87.4
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2431.0 1383 87.0
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2429.1 1383 87.1
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2428.7 1383 87.9
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2428.7 1384 87.7
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2427.9 1384 87.4
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2424.0 1384 87.5
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2423.3 1384 87.1
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2422.9 1384 87.4
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2421.0 1384 87.3
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2410.6 1355 88.1
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2410.2 1384 86.8
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2410.2 1384 86.8
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2402.9 1384 86.6
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2402.9 1384 86.6
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2401.3 1384 86.5
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2382.4 1384 85.5
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2356.3 1385 84.5
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2351.6 1383 84.7
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2350.9 1382 85.2
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2337.4 1384 84.1
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2313.9 1354 84.0
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2312.0 1408 83.0
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2309.3 1258 91.1
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2289.6 1329 83.8
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2273.0 1258 90.3
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2239.5 1261 88.2
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2219.9 1347 83.7
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2197.5 1333 80.7
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2187.5 1351 79.5
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2171.4 1341 78.7
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2166.7 1345 78.8
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2166.7 1345 78.8
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2155.6 1332 78.5
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1996.9 1120 88.4
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1973.0 1108 88.4
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1970.7 1380 74.6
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1912.9 1400 73.1
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1891.3 1332 69.4
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1848.9 1334 68.3
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1709.9 1382 66.1
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1676.8 913 90.4
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1637.1 896 90.6
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1498.0 809 91.1
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1491.9 808 90.8
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1191.0 700 86.1
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1146.7 690 83.5
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 1127.5 669 86.4
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 2.0e-296 1023.1 571 86.7
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 1.6e-264 917.1 1199 44.4
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 2.3e-263 913.3 588 78.4
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.3e-239 834.3 470 87.4
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 4.7e-237 825.9 470 86.8
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 6.8e-236 822.0 471 87.7
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 1.4e-217 761.1 471 82.4
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 2.5e-206 723.8 398 88.2
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 7.7e-179 632.5 1394 32.2
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 4.0e-159 567.0 1468 30.0
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 2.8e-112 411.4 1280 28.4
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 8.7e-90 336.7 175 94.3
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 1.8e-66 259.2 147 86.4
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.2e-59 236.5 123 91.9
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 2.4e-47 195.7 107 92.5
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 6.3e-40 171.0 197 52.3
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 7.7e-30 137.5 139 50.4
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 1.1e-28 133.7 99 70.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 8.0e-27 127.5 91 71.4
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 1.9e-20 106.3 61 85.2


User provided reference genes

Program Settings