Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 6.1e-278 960.3 526 100.0
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 1.8e-184 649.8 536 70.7
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 5.9e-172 608.2 538 67.5
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.8e-168 596.7 547 67.8
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 7.7e-164 581.3 532 67.1
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.5e-162 575.1 541 65.2
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.7e-155 553.5 517 65.4
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 6.6e-155 551.6 519 66.1
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.9e-154 550.1 519 66.1
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 3.3e-146 522.7 551 59.2
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.3e-142 510.8 528 61.4
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 9.2e-141 504.6 535 60.9
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 3.3e-138 496.1 528 58.3
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 1.6e-137 493.8 523 56.6
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.8e-136 490.3 527 59.8
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 1.3e-134 484.2 544 55.3
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 7.1e-133 478.4 549 56.5
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 2.7e-132 476.5 546 54.8
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 7.8e-132 474.9 526 57.6
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 1.0e-131 474.6 546 53.3
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.5e-130 470.7 527 56.4
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 2.8e-129 466.5 526 54.4
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 2.3e-128 463.4 524 54.4
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 2.3e-128 463.4 550 52.9
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 4.0e-128 462.6 521 54.1
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.0e-128 462.6 527 55.4
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 8.9e-128 461.5 530 55.5
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 1.2e-127 461.1 520 57.1
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 9.9e-127 458.0 562 50.4
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 1.3e-126 457.6 557 54.9
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.3e-126 457.6 524 52.3
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.4e-125 454.1 550 52.0
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 9.2e-125 451.4 520 52.3
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 2.7e-124 449.9 546 51.5
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 1.1e-122 444.5 528 54.7
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 7.3e-122 441.8 470 55.5
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 2.1e-121 440.3 561 48.3
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 1.4e-120 437.6 523 54.9
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 1.8e-120 437.2 533 52.7
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.2e-117 426.4 554 52.2
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 1.2e-116 424.5 537 51.6
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.7e-116 423.3 524 48.7
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 6.6e-115 418.7 520 54.0
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 4.4e-111 406.0 548 50.0
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 8.4e-110 401.7 550 50.0
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.1e-109 401.4 524 47.5
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 2.4e-109 400.2 541 49.9
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 5.4e-109 399.1 524 47.3
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 7.1e-109 398.7 523 47.6
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 9.3e-109 398.3 553 48.3
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.6e-108 397.5 520 47.7
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 7.9e-108 395.2 544 47.6
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 1.5e-106 391.0 405 58.0
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 1.5e-106 391.0 357 60.2
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 3.3e-106 389.8 525 48.4
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 2.8e-105 386.7 346 61.0
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 4.8e-105 386.0 524 48.1
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 1.4e-104 384.4 525 46.1
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 2.0e-103 380.6 543 45.5
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 2.0e-103 380.6 522 47.3
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 3.4e-103 379.8 519 47.0
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 4.9e-102 375.9 477 49.1
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 4.9e-102 375.9 526 46.4
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 7.1e-101 372.1 517 47.8
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 9.3e-101 371.7 532 47.6
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 1.3e-99 367.9 545 45.0
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 1.3e-99 367.9 472 49.6
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 1.3e-99 367.9 505 48.7
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 2.3e-99 367.1 522 45.4
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 2.3e-99 367.1 548 44.5
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 3.0e-99 366.7 475 48.8
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 8.7e-99 365.2 490 50.4
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 8.7e-99 365.2 520 45.4
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 1.5e-98 364.4 546 46.7
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 2.5e-98 363.6 353 55.2
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 3.7e-97 359.8 374 54.5
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 6.2e-97 359.0 521 46.1
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 5.3e-96 355.9 520 44.2
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 9.0e-96 355.1 450 49.3
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 2.0e-95 354.0 534 44.9
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 3.4e-95 353.2 524 44.1
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 2.9e-94 350.1 464 45.3
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 2.9e-94 350.1 464 45.3
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 2.9e-94 350.1 464 45.3
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 5.5e-93 345.9 489 45.4
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 9.3e-93 345.1 480 45.6
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 2.1e-92 344.0 357 53.8
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 2.7e-92 343.6 513 44.8
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 7.9e-92 342.0 507 49.3
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 1.3e-91 341.3 475 45.9
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 3.0e-91 340.1 484 45.5
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 6.7e-91 339.0 475 48.0
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 1.1e-90 338.2 359 52.1
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 7.4e-90 335.5 439 47.2
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 9.6e-90 335.1 478 45.8
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 6.3e-89 332.4 345 54.2
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.4e-88 331.3 460 47.8
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 2.4e-88 330.5 360 51.9
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 4.1e-88 329.7 471 45.9
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 1.5e-87 327.8 436 46.3
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.0e-87 327.4 361 52.1
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 4.5e-87 326.2 467 45.6
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 4.5e-87 326.2 362 51.4
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 1.3e-86 324.7 516 44.2
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 1.3e-86 324.7 516 44.2
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.3e-86 324.7 358 52.2
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 6.5e-86 322.4 482 44.4
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 6.5e-86 322.4 482 44.4
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 6.5e-86 322.4 482 44.4
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 2.5e-85 320.5 528 43.8
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 3.2e-85 320.1 470 44.9
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 5.5e-85 319.3 537 41.5
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 2.1e-84 317.4 543 38.7
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 3.3e-82 310.1 351 53.6
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 6.3e-81 305.8 461 44.5
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 8.2e-81 305.4 514 39.9
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 3.1e-80 303.5 410 43.2
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 2.6e-79 300.4 548 42.3
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 2.6e-79 300.4 352 51.1
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.3e-78 298.1 410 45.6
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.3e-78 298.1 372 48.7
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 1.7e-78 297.7 302 55.0
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 3.8e-78 296.6 336 53.3
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.4e-77 294.7 414 44.9
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 7.2e-77 292.4 500 40.6
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.0e-75 287.0 359 48.7
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 3.9e-75 286.6 400 46.2
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 2.8e-73 280.4 323 51.4
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 3.4e-71 273.5 316 52.2
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.9e-69 267.7 411 43.1
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 2.5e-69 267.3 516 39.0
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 4.8e-65 253.1 293 50.2
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 1.0e-62 245.4 285 48.4
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.3e-62 245.0 303 50.2
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 3.8e-62 243.4 328 48.5
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 4.2e-61 240.0 214 61.2
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 2.8e-57 227.3 391 37.9
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 4.8e-57 226.5 389 37.5
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.3e-49 201.8 561 31.6
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.3e-49 201.8 561 31.6
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 1.6e-44 184.9 505 30.9
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.0e-39 167.9 173 54.9
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 5.9e-39 166.4 173 56.1
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.2e-36 158.7 433 30.7
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.7e-34 149.8 305 33.8
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.3e-33 148.7 429 28.9
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.2e-33 147.9 255 35.7
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.9e-33 146.7 317 36.0
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 8.3e-33 146.0 307 35.8
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.5e-31 140.6 183 50.3
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.7e-30 138.3 423 28.8
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 4.0e-27 127.1 116 59.5
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 2.0e-26 124.8 469 24.1
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 3.4e-26 124.0 348 30.2
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 3.2e-24 117.5 353 29.5
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.7e-23 114.4 204 33.8
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 1.5e-21 108.6 159 47.2
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 4.0e-19 100.5 181 37.6
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 2.0e-18 98.2 140 45.0
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.0e-14 85.9 84 53.6
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 2.3e-11 74.7 56 69.6
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 5.1e-06 57.0 55 45.5


User provided reference genes

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