Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 7.0e-72 273.9 140 100.0
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 4.4e-42 174.9 140 72.9
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.6e-31 139.8 146 63.0
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 2.7e-31 139.0 115 71.3
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 6.0e-31 137.9 146 62.3
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 6.0e-31 137.9 138 65.9
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.5e-29 133.3 138 63.8
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 3.3e-29 132.1 136 65.4
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.3e-29 132.1 136 65.4
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.3e-29 132.1 136 65.4
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.0e-26 122.9 136 64.0
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 5.5e-24 114.8 144 54.2
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 5.5e-24 114.8 144 57.6
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 2.1e-23 112.8 125 60.8
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 6.0e-23 111.3 142 56.3
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.3e-22 109.4 122 54.9
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 2.3e-22 109.4 140 52.9
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.5e-21 106.7 143 52.4
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 4.3e-21 105.1 141 51.1
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 9.6e-21 104.0 146 52.7
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 1.3e-20 103.6 139 52.5
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 3.7e-20 102.1 122 53.3
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 4.8e-20 101.7 145 49.7
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 4.8e-20 101.7 126 53.2
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 6.2e-20 101.3 145 50.3
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 1.1e-19 100.5 145 48.3
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 1.1e-19 100.5 144 51.4
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.4e-19 100.1 133 54.9
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 1.4e-19 100.1 144 51.4
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.4e-19 99.4 145 50.3
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 5.3e-19 98.2 141 48.2
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 6.9e-19 97.8 124 51.6
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 6.9e-19 97.8 139 51.1
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.6e-18 95.9 142 48.6
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 3.4e-18 95.5 140 50.0
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 5.8e-18 94.7 130 52.3
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 5.8e-18 94.7 138 51.4
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 5.8e-18 94.7 138 50.7
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 7.6e-18 94.4 145 49.0
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 1.7e-17 93.2 141 48.9
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.7e-17 93.2 142 47.2
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.7e-17 93.2 119 48.7
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 2.9e-17 92.4 134 47.8
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 2.9e-17 92.4 138 50.0
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.9e-17 92.4 142 50.0
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 3.8e-17 92.0 145 49.0
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 4.9e-17 91.7 126 51.6
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 4.9e-17 91.7 79 64.6
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 4.2e-16 88.6 138 46.4
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 5.5e-16 88.2 144 45.1
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.2e-15 87.0 140 47.9
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.6e-15 86.7 126 48.4
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.6e-15 86.7 126 48.4
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 2.1e-15 86.3 132 47.0
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.6e-15 85.1 126 47.6
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.6e-15 85.1 126 47.6
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 6.0e-15 84.7 143 44.8
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 7.9e-15 84.3 127 48.0
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 5.1e-14 81.6 138 47.8
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 6.7e-14 81.3 124 47.6
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 8.7e-14 80.9 142 45.1
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 1.1e-13 80.5 123 48.0
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 2.5e-13 79.3 138 42.8
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 2.5e-13 79.3 148 46.6
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 4.3e-13 78.6 138 44.9
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 4.3e-13 78.6 134 45.5
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 9.6e-13 77.4 140 44.3
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 9.6e-13 77.4 125 48.0
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 9.6e-13 77.4 119 45.4
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 1.3e-12 77.0 150 37.3
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.6e-12 76.6 146 44.5
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.6e-12 76.6 141 45.4
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.6e-12 76.6 164 39.6
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 2.1e-12 76.3 140 43.6
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 2.1e-12 76.3 137 46.7
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.7e-12 75.5 140 45.0
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 3.7e-12 75.5 146 45.2
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 8.2e-12 74.3 142 41.5
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 8.2e-12 74.3 124 44.4
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.1e-11 73.9 118 50.0
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.8e-11 73.2 146 43.2
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.8e-11 73.2 79 54.4
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.4e-11 72.8 144 42.4
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 2.4e-11 72.8 127 43.3
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.4e-11 72.8 92 52.2
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 2.4e-11 72.8 136 41.9
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 2.4e-11 72.8 124 44.4
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 4.1e-11 72.0 122 47.5
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 6.9e-11 71.2 77 57.1
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.0e-10 69.7 60 71.7
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 2.6e-10 69.3 75 58.7
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.6e-10 69.3 75 58.7
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 2.6e-10 69.3 75 58.7
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.6e-10 69.3 75 57.3
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 3.4e-10 68.9 79 49.4
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 4.5e-10 68.6 88 52.3
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 4.5e-10 68.6 147 38.8
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 4.5e-10 68.6 69 59.4
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 5.9e-10 68.2 75 57.3
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.6e-10 67.8 140 44.3
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 7.6e-10 67.8 124 45.2
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 7.6e-10 67.8 118 44.1
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.7e-09 66.6 76 55.3
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 2.2e-09 66.2 138 39.1
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.9e-09 65.9 65 58.5
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 3.8e-09 65.5 81 54.3
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 5.0e-09 65.1 120 44.2
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 5.0e-09 65.1 138 37.7
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 6.5e-09 64.7 104 44.2
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 8.5e-09 64.3 138 41.3
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.4e-08 63.5 75 53.3
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.9e-08 63.2 148 41.9
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 2.5e-08 62.8 87 52.9
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 4.2e-08 62.0 69 56.5
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 5.5e-08 61.6 72 58.3
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 2.1e-07 59.7 79 51.9
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.1e-07 59.7 122 44.3
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 4.6e-07 58.5 148 39.9


User provided reference genes

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