Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 2.2e-181 639.4 487 100.0
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 7.8e-86 322.0 420 67.1
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 6.5e-40 169.5 497 45.3
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 6.5e-40 169.5 431 48.7
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 1.0e-37 162.2 422 44.1
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 1.0e-37 162.2 413 41.6
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.4e-37 161.8 422 44.1
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.1e-36 158.7 422 44.8
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.1e-36 158.7 426 42.7
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.1e-36 158.7 426 42.7
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 9.7e-36 155.6 424 45.8
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 4.8e-35 153.3 355 57.2
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.1e-34 152.1 347 49.3
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 9.1e-34 149.1 339 51.6
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.2e-33 148.7 351 45.9
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 1.2e-33 148.7 347 48.4
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.6e-33 147.5 448 35.5
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 7.7e-33 146.0 402 42.5
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 7.7e-33 146.0 403 42.9
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 1.0e-32 145.6 365 54.0
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 1.7e-32 144.8 424 41.5
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 3.8e-32 143.7 441 37.4
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 6.5e-32 142.9 359 49.0
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 8.5e-32 142.5 416 43.3
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.1e-31 142.1 399 46.4
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 1.4e-31 141.7 383 46.5
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.4e-31 141.7 385 46.2
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 3.2e-31 140.6 388 42.5
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 3.2e-31 140.6 406 42.1
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 4.2e-31 140.2 359 48.7
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 4.2e-31 140.2 416 43.8
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 4.2e-31 140.2 448 37.5
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 1.8e-29 134.8 373 39.4
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.8e-29 134.8 442 38.2
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 5.2e-29 133.3 451 37.3
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 6.7e-29 132.9 404 35.4
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 8.8e-29 132.5 406 48.5
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 1.1e-28 132.1 373 46.1
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 4.4e-28 130.2 377 51.2
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 4.4e-28 130.2 417 37.4
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.3e-27 128.6 421 44.9
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.7e-27 128.3 355 36.3
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 4.8e-27 126.7 411 43.6
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 2.4e-26 124.4 338 38.2
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 4.1e-26 123.6 391 44.8
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 5.3e-26 123.2 441 42.2
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 5.3e-26 123.2 396 46.7
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 7.0e-26 122.9 384 41.7
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 7.7e-25 119.4 437 35.2
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.7e-24 118.2 343 36.4
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 2.9e-24 117.5 446 46.0
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.9e-24 117.5 374 42.2
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 5.0e-24 116.7 398 44.2
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 6.5e-24 116.3 390 47.9
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 1.5e-23 115.2 434 39.9
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 1.5e-23 115.2 367 38.1
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 1.9e-23 114.8 395 38.5
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 2.5e-23 114.4 426 37.3
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 5.5e-23 113.2 362 38.4
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.6e-22 111.7 407 41.8
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.6e-22 111.7 384 33.9
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.1e-22 111.3 382 35.9
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 2.7e-22 110.9 199 42.2
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.6e-22 110.5 356 39.3
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.8e-21 108.2 366 34.2
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 4.0e-21 107.1 334 38.3
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 1.5e-20 105.1 415 42.4
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.0e-20 104.8 367 50.7
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 2.0e-20 104.8 311 33.8
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 3.3e-20 104.0 276 35.1
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 4.4e-20 103.6 377 38.5
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 7.5e-20 102.8 418 41.6
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 7.5e-20 102.8 369 40.9
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.3e-19 102.1 400 43.0
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 2.2e-19 101.3 374 35.3
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 2.8e-19 100.9 269 40.5
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 6.3e-19 99.8 373 50.4
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 8.2e-19 99.4 391 35.3
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 8.2e-19 99.4 391 39.6
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.8e-18 98.2 324 34.3
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 2.4e-18 97.8 316 33.2
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 3.1e-18 97.4 386 39.4
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.1e-18 97.4 352 44.0
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 3.1e-18 97.4 384 32.3
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 3.1e-18 97.4 389 45.0
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 3.1e-18 97.4 279 38.0
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.6e-17 95.1 263 43.7
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 1.6e-17 95.1 416 36.5
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 2.0e-17 94.7 382 38.2
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 4.5e-17 93.6 384 37.8
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 7.7e-17 92.8 365 48.5
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.3e-16 92.0 422 39.8
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.7e-16 91.7 262 34.0
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.7e-16 91.7 282 42.6
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.9e-16 90.9 412 45.1
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 2.9e-16 90.9 160 45.0
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 2.9e-16 90.9 428 31.1
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.8e-16 90.5 298 37.9
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 5.0e-16 90.1 334 47.3
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 5.0e-16 90.1 358 30.4
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.2e-14 85.5 330 41.8
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 2.7e-14 84.3 338 51.5
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.7e-14 83.6 329 37.4
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.7e-14 83.6 337 31.8
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.0e-13 82.4 174 39.1
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.0e-13 82.4 332 30.7
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.4e-13 82.0 339 44.5
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.3e-13 81.3 393 31.3
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 3.0e-13 80.9 376 28.7
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 5.2e-13 80.1 284 41.2
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 8.8e-13 79.3 380 40.5
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 8.8e-13 79.3 261 33.7
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.2e-12 79.0 376 37.0
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.2e-12 79.0 296 30.4
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.2e-12 79.0 290 29.3
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.5e-12 78.6 341 29.0
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 2.6e-12 77.8 346 44.5
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 2.6e-12 77.8 348 40.8
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 4.4e-12 77.0 444 39.2
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 7.5e-12 76.3 252 32.5
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 1.7e-11 75.1 386 28.0
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 2.2e-11 74.7 271 32.5
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.8e-11 74.3 344 43.9
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.7e-11 73.9 138 44.9
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 4.8e-11 73.6 278 31.7
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 3.1e-10 70.9 343 33.5
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 4.1e-10 70.5 43 76.7
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 2.0e-09 68.2 263 31.2
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.0e-09 68.2 255 31.8
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 2.0e-09 68.2 125 44.0
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.7e-09 67.8 255 30.6
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 3.5e-09 67.4 42 73.8
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 5.9e-09 66.6 391 39.9
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 7.7e-09 66.2 405 29.6
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.0e-08 65.9 43 76.7
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.3e-08 64.7 158 39.9
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.9e-08 64.3 286 30.4
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.8e-08 63.9 373 32.7
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 5.0e-08 63.5 78 48.7
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 5.0e-08 63.5 78 48.7
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 5.0e-08 63.5 254 29.9
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 5.0e-08 63.5 326 30.1
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 6.5e-08 63.2 130 41.5
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 8.6e-08 62.8 127 37.8
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 1.9e-07 61.6 146 32.2
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 4.2e-07 60.5 244 30.7
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 4.2e-07 60.5 362 35.6
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 9.5e-07 59.3 374 27.0


User provided reference genes

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