Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G057100 Prunus persica HOM05D004409 ORTHO05D005292 9.6e-62 240.0 119 100.0
MD07G1239700 Malus domestica HOM05D004409 ORTHO05D005292 3.0e-39 165.2 119 69.7
MD07G1239800 Malus domestica HOM05D004409 ORTHO05D005292 1.3e-37 159.8 119 68.9
RcHm_v2.0_Chr1g0372991 Rosa chinensis HOM05D004409 ORTHO05D005292 1.2e-35 153.3 117 65.8
RcHm_v2.0_Chr1g0328141 Rosa chinensis HOM05D004409 ORTHO05D005292 2.6e-35 152.1 117 65.0
RcHm_v2.0_Chr1g0372951 Rosa chinensis HOM05D004409 ORTHO05D005292 2.6e-35 152.1 113 69.0
RcHm_v2.0_Chr1g0328171 Rosa chinensis HOM05D004409 ORTHO05D005292 5.8e-35 151.0 110 70.0
FvH4_7g26400 Fragaria vesca HOM05D004409 ORTHO05D005292 1.4e-33 146.4 117 63.2
Thecc.03G144800 Theobroma cacao HOM05D004409 ORTHO05D005292 1.9e-33 146.0 114 67.5
FAN10G3781 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.6e-32 142.9 114 61.4
CANSAT56G2887 Cannabis sativa HOM05D004409 ORTHO05D005292 2.1e-32 142.5 107 61.7
Thecc.03G144900 Theobroma cacao HOM05D004409 ORTHO05D005292 4.6e-32 141.4 114 64.0
COL.COLO4_37301 Corchorus olitorius HOM05D004409 ORTHO05D005292 7.9e-32 140.6 114 65.8
FAN01G0604 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.8e-31 139.4 114 62.3
FvH4_7g26430 Fragaria vesca HOM05D004409 ORTHO05D005292 2.3e-31 139.0 118 59.3
FAN10G4140 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.1e-30 136.7 118 60.2
Actinidia01026 Actinidia chinensis HOM05D004409 ORTHO05D005292 1.9e-30 136.0 119 58.8
FAN03G2468 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.9e-30 136.0 106 60.4
Atru.chr6.1971 Acer truncatum HOM05D004409 ORTHO05D005292 2.5e-30 135.6 119 58.0
Thecc.03G144700 Theobroma cacao HOM05D004409 ORTHO05D005292 3.3e-30 135.2 115 61.7
Duzib205G0410 Durio zibethinus HOM05D004409 ORTHO05D005292 3.7e-29 131.7 117 60.7
Hma1.2p1_1014F.1_g247850 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 4.8e-29 131.3 105 63.8
Dinv34530 Davidia involucrata HOM05D004409 ORTHO05D005292 6.2e-29 131.0 104 61.5
FAN06G5092 Fragaria x ananassa HOM05D004409 ORTHO05D005292 6.2e-29 131.0 114 58.8
Eucgr.K00114 Eucalyptus grandis HOM05D004409 ORTHO05D005292 1.4e-28 129.8 93 64.5
FAN17G1151 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.8e-28 129.4 107 58.9
GSVIVG01013894001 Vitis vinifera HOM05D004409 ORTHO05D005292 9.0e-28 127.1 94 64.9
PGR142G3629 Punica granatum HOM05D004409 ORTHO05D005292 1.5e-27 126.3 107 58.9
GSVIVG01024506001 Vitis vinifera HOM05D004409 ORTHO05D005292 5.8e-27 124.4 96 62.5
Hma1.2p1_1014F.1_g247840 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.7e-26 122.9 105 61.0
TWI39G0462 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 2.2e-26 122.5 108 59.3
MD07G1239500 Malus domestica HOM05D004409 ORTHO05D005292 2.9e-26 122.1 102 56.9
TWI39G0310 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 2.9e-26 122.1 108 60.2
COL.COLO4_37302 Corchorus olitorius HOM05D004409 ORTHO05D005292 3.8e-26 121.7 116 58.6
COL.COLO4_32251 Corchorus olitorius HOM05D004409 ORTHO05D005292 1.9e-25 119.4 110 57.3
TWI39G0193 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.9e-25 119.4 108 58.3
GSVIVG01013816001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.9e-25 119.4 94 59.6
Gohir.A12G212400 Gossypium hirsutum HOM05D004409 ORTHO05D005292 9.3e-25 117.1 105 55.2
Gorai.008G230500 Gossypium raimondii HOM05D004409 ORTHO05D005292 9.3e-25 117.1 105 55.2
Cc06_g12260 Coffea canephora HOM05D004409 ORTHO05D005292 1.6e-24 116.3 92 57.6
Gohir.D12G214900 Gossypium hirsutum HOM05D004409 ORTHO05D005292 1.6e-24 116.3 105 55.2
GSVIVG01013815001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.1e-24 115.9 111 49.5
TWI60G0543 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 3.5e-24 115.2 109 55.0
Duzib205G0528 Durio zibethinus HOM05D004409 ORTHO05D005292 4.6e-24 114.8 106 54.7
Oeu056339.1 Olea europaea HOM05D004409 ORTHO05D005292 4.6e-24 114.8 103 57.3
HanXRQChr13g0419061 Helianthus annuus HOM05D004409 ORTHO05D005292 7.9e-24 114.0 106 52.8
Thecc.07G180600 Theobroma cacao HOM05D004409 ORTHO05D005292 7.9e-24 114.0 113 53.1
CANSAT56G4079 Cannabis sativa HOM05D004409 ORTHO05D005292 1.0e-23 113.6 105 53.3
Dinv28881 Davidia involucrata HOM05D004409 ORTHO05D005292 1.0e-23 113.6 107 54.2
CANSAT56G0658 Cannabis sativa HOM05D004409 ORTHO05D005292 2.3e-23 112.5 105 53.3
Potri.003G084000 Populus trichocarpa HOM05D004409 ORTHO05D005292 2.3e-23 112.5 105 55.2
Thecc.03G239100 Theobroma cacao HOM05D004409 ORTHO05D005292 3.9e-23 111.7 106 51.9
TWI39G0819 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 3.9e-23 111.7 103 58.3
Atru.chr9.1197 Acer truncatum HOM05D004409 ORTHO05D005292 5.1e-23 111.3 116 53.4
Peaxi162Scf00102g00085 Petunia axillaris HOM05D004409 ORTHO05D005292 5.1e-23 111.3 105 49.5
Manes.01G089900 Manihot esculenta HOM05D004409 ORTHO05D005292 6.7e-23 110.9 117 49.6
DCAR_008327 Daucus carota HOM05D004409 ORTHO05D005292 1.5e-22 109.8 83 60.2
ECA240G1407 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.5e-22 109.8 83 59.0
Nitab4.5_0000185g0190 Nicotiana tabacum HOM05D004409 ORTHO05D005292 1.9e-22 109.4 114 47.4
SGA_v2.0_scaffold91G28102 Striga asiatica HOM05D004409 ORTHO05D005292 1.9e-22 109.4 106 52.8
GSVIVG01013825001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.9e-22 109.4 111 51.4
QL12p008592 Quercus lobata HOM05D004409 ORTHO05D005292 2.5e-22 109.0 112 49.1
Actinidia31492 Actinidia chinensis HOM05D004409 ORTHO05D005292 3.3e-22 108.6 117 50.4
Aqoxy6G00065 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 3.3e-22 108.6 108 47.2
Cpa.g.sc13.213 Carica papaya HOM05D004409 ORTHO05D005292 3.3e-22 108.6 110 50.9
DCAR_003519 Daucus carota HOM05D004409 ORTHO05D005292 3.3e-22 108.6 82 58.5
Lsat_1_v5_gn_6_94501 Lactuca sativa HOM05D004409 ORTHO05D005292 4.3e-22 108.2 103 49.5
Sabra03G0054600 Salix brachista HOM05D004409 ORTHO05D005292 4.3e-22 108.2 107 52.3
CANSAT56G2756 Cannabis sativa HOM05D004409 ORTHO05D005292 5.7e-22 107.8 108 50.9
Aqoxy3G02644 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 7.4e-22 107.5 107 50.5
MSTRG.27238 Avicennia marina HOM05D004409 ORTHO05D005292 7.4e-22 107.5 107 51.4
Ciclev10030379m.g Citrus clementina HOM05D004409 ORTHO05D005292 7.4e-22 107.5 84 59.5
Ciclev10033339m.g Citrus clementina HOM05D004409 ORTHO05D005292 9.7e-22 107.1 83 57.8
PGSC0003DMG400026212 Solanum tuberosum HOM05D004409 ORTHO05D005292 9.7e-22 107.1 95 50.5
CSS0044628 Camellia sinensis var. sinensis HOM05D004409 ORTHO05D005292 1.3e-21 106.7 105 47.6
ECA240G0589 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.3e-21 106.7 106 46.2
Cc08_g11210 Coffea canephora HOM05D004409 ORTHO05D005292 1.6e-21 106.3 107 49.5
Migut.H01906 Erythranthe guttata HOM05D004409 ORTHO05D005292 1.6e-21 106.3 114 47.4
HanXRQChr03g0089681 Helianthus annuus HOM05D004409 ORTHO05D005292 1.6e-21 106.3 106 47.2
GSVIVG01004835001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.6e-21 106.3 110 47.3
Duzib068G1042 Durio zibethinus HOM05D004409 ORTHO05D005292 2.8e-21 105.5 106 51.9
Hma1.2p1_3159F.1_g333389 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 2.8e-21 105.5 103 52.4
Actinidia10866 Actinidia chinensis HOM05D004409 ORTHO05D005292 3.7e-21 105.1 107 49.5
CANSAT21G0737 Cannabis sativa HOM05D004409 ORTHO05D005292 3.7e-21 105.1 112 50.0
COL.COLO4_21695 Corchorus olitorius HOM05D004409 ORTHO05D005292 3.7e-21 105.1 83 55.4
Hma1.2p1_1014F.1_g247830 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 3.7e-21 105.1 101 53.5
MELO3C014170.2 Cucumis melo HOM05D004409 ORTHO05D005292 6.3e-21 104.4 105 47.6
Oeu006074.1 Olea europaea HOM05D004409 ORTHO05D005292 6.3e-21 104.4 93 57.0
GSVIVG01024502001 Vitis vinifera HOM05D004409 ORTHO05D005292 6.3e-21 104.4 115 47.0
COL.COLO4_06685 Corchorus olitorius HOM05D004409 ORTHO05D005292 8.2e-21 104.0 107 52.3
DCAR_005587 Daucus carota HOM05D004409 ORTHO05D005292 8.2e-21 104.0 104 49.0
EL10Ac1g00121 Beta vulgaris HOM05D004409 ORTHO05D005292 1.1e-20 103.6 119 47.9
CANSAT21G0033 Cannabis sativa HOM05D004409 ORTHO05D005292 1.1e-20 103.6 118 49.2
THA.LOC104809923 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 1.1e-20 103.6 105 48.6
Ciclev10022946m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.8e-20 102.8 116 46.6
Sed0027041 Sechium edule HOM05D004409 ORTHO05D005292 2.4e-20 102.4 106 45.3
Migut.H01907 Erythranthe guttata HOM05D004409 ORTHO05D005292 3.1e-20 102.1 118 45.8
HanXRQChr13g0419051 Helianthus annuus HOM05D004409 ORTHO05D005292 4.1e-20 101.7 106 45.3
GSVIVG01004822001 Vitis vinifera HOM05D004409 ORTHO05D005292 4.1e-20 101.7 83 54.2
GSVIVG01004827001 Vitis vinifera HOM05D004409 ORTHO05D005292 4.1e-20 101.7 83 54.2
CsaV3_3G004710 Cucumis sativus L. HOM05D004409 ORTHO05D005292 5.3e-20 101.3 104 47.1
Prupe.5G054600 Prunus persica HOM05D004409 ORTHO05D005292 5.3e-20 101.3 106 49.1
Atru.chr9.1196 Acer truncatum HOM05D004409 ORTHO05D005292 9.0e-20 100.5 84 54.8
ATR1136G211 Amborella trichopoda HOM05D004409 ORTHO05D005292 1.5e-19 99.8 109 47.7
Gohir.D13G124300 Gossypium hirsutum HOM05D004409 ORTHO05D005292 2.0e-19 99.4 103 46.6
Duzib068G0789 Durio zibethinus HOM05D004409 ORTHO05D005292 4.5e-19 98.2 103 50.5
Hund27103 Selenicereus undatus HOM05D004409 ORTHO05D005292 4.5e-19 98.2 106 43.4
TAR636G0884 Trochodendron aralioides HOM05D004409 ORTHO05D005292 4.5e-19 98.2 112 48.2
MELO3C013895.2 Cucumis melo HOM05D004409 ORTHO05D005292 5.9e-19 97.8 105 44.8
CsaV3_3G002240 Cucumis sativus L. HOM05D004409 ORTHO05D005292 5.9e-19 97.8 104 46.2
GSVIVG01004832001 Vitis vinifera HOM05D004409 ORTHO05D005292 5.9e-19 97.8 91 47.3
Ciclev10022894m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.3e-18 96.7 108 43.5
GSVIVG01004836001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.7e-18 96.3 103 43.7
PGR042G3450 Punica granatum HOM05D004409 ORTHO05D005292 2.9e-18 95.5 87 50.6
Peaxi162Scf00391g00715 Petunia axillaris HOM05D004409 ORTHO05D005292 3.8e-18 95.1 84 50.0
Oeu019420.1 Olea europaea HOM05D004409 ORTHO05D005292 5.0e-18 94.7 105 45.7
TAR375G0026 Trochodendron aralioides HOM05D004409 ORTHO05D005292 8.5e-18 94.0 114 47.4
GSVIVG01004838001 Vitis vinifera HOM05D004409 ORTHO05D005292 8.5e-18 94.0 92 48.9
Cfa012334 Carpinus fangiana HOM05D004409 ORTHO05D005292 1.1e-17 93.6 108 44.4
ClCG10G002150 Citrullus lanatus HOM05D004409 ORTHO05D005292 1.1e-17 93.6 113 45.1
Dinv25140 Davidia involucrata HOM05D004409 ORTHO05D005292 1.9e-17 92.8 117 43.6
Thecc.08G189000 Theobroma cacao HOM05D004409 ORTHO05D005292 2.5e-17 92.4 78 51.3
Cfa012333 Carpinus fangiana HOM05D004409 ORTHO05D005292 3.2e-17 92.0 110 44.5
TAR375G0484 Trochodendron aralioides HOM05D004409 ORTHO05D005292 3.2e-17 92.0 115 43.5
CAN.G845.22 Capsicum annuum HOM05D004409 ORTHO05D005292 4.2e-17 91.7 107 42.1
Dinv28880 Davidia involucrata HOM05D001887 ORTHO05D003756 4.2e-17 91.7 107 44.9
TAR375G0498 Trochodendron aralioides HOM05D004409 ORTHO05D005292 7.2e-17 90.9 115 44.3
Actinidia25914 Actinidia chinensis HOM05D004409 ORTHO05D005292 1.2e-16 90.1 110 44.5
CAN.G572.17 Capsicum annuum HOM05D004409 ORTHO05D005292 1.6e-16 89.7 105 41.9
ECA240G4009 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.6e-16 89.7 79 51.9
Lsat_1_v5_gn_6_94401 Lactuca sativa HOM05D004409 ORTHO05D005292 1.6e-16 89.7 108 42.6
HanXRQChr03g0089691 Helianthus annuus HOM05D004409 ORTHO05D005292 3.6e-16 88.6 117 41.9
ATR1136G215 Amborella trichopoda HOM05D004409 ORTHO05D005292 6.1e-16 87.8 77 48.1
HanXRQChr13g0418291 Helianthus annuus HOM05D004409 ORTHO05D005292 6.1e-16 87.8 113 40.7
Eucgr.K00115 Eucalyptus grandis HOM05D004409 ORTHO05D005292 1.4e-15 86.7 122 40.2
ATR1136G026 Amborella trichopoda HOM05D004409 ORTHO05D005292 2.3e-15 85.9 77 48.1
Migut.J00932 Erythranthe guttata HOM05D004409 ORTHO05D005292 8.8e-15 84.0 103 42.7
Aa31LG9G14800 Aethionema arabicum HOM05D004409 ORTHO05D005292 5.7e-14 81.3 111 37.8
Haze_08359 Corylus avellana HOM05D004409 ORTHO05D005292 1.3e-13 80.1 100 45.0
THA.LOC104816486 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 1.7e-13 79.7 83 43.4
TAR375G0880 Trochodendron aralioides HOM05D004409 ORTHO05D005292 3.7e-13 78.6 106 44.3
Ciclev10033338m.g Citrus clementina HOM05D004409 ORTHO05D005292 6.3e-13 77.8 98 42.9
Sp6g08250 Schrenkiella parvula HOM05D004409 ORTHO05D005292 4.5e-11 71.6 81 39.5
ATR0745G048 Amborella trichopoda HOM05D004409 ORTHO05D005292 6.5e-10 67.8 112 32.1
Gorai.013G138900 Gossypium raimondii HOM05D004409 ORTHO05D005292 8.5e-10 67.4 62 48.4
THA.LOC104800444 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 1.4e-09 66.6 84 38.1
TAR623G0756 Trochodendron aralioides HOM05D002739 ORTHO05D002877 1.4e-09 66.6 104 28.8
Nn7g36459 Nelumbo nucifera HOM05D002739 ORTHO05D002877 5.5e-09 64.7 105 32.4
PSO339G0568 Papaver somniferum HOM05D002739 ORTHO05D002877 5.5e-09 64.7 82 30.5
Actinidia16366 Actinidia chinensis HOM05D002739 ORTHO05D002877 7.2e-09 64.3 74 39.2
ATR0721G147 Amborella trichopoda HOM05D002739 ORTHO05D002877 1.6e-08 63.2 94 35.1
Carub.0006s2782 Capsella rubella HOM05D004409 ORTHO05D005292 1.6e-08 63.2 120 34.2
CARHR260260 Cardamine hirsuta HOM05D004409 ORTHO05D005292 1.6e-08 63.2 108 32.4
Duzib168G0444 Durio zibethinus HOM05D002739 ORTHO05D002877 2.1e-08 62.8 116 28.4
CAN.G572.18 Capsicum annuum HOM05D004409 ORTHO05D005292 2.7e-08 62.4 82 34.1
Dinv34529 Davidia involucrata HOM05D004409 ORTHO05D005292 2.7e-08 62.4 66 45.5
PSO339G6632 Papaver somniferum HOM05D002739 ORTHO05D002877 3.6e-08 62.0 113 31.0
PSO339G0161 Papaver somniferum HOM05D002739 ORTHO05D002877 4.7e-08 61.6 113 31.9
Gohir.A07G121800 Gossypium hirsutum HOM05D002739 ORTHO05D002877 6.1e-08 61.2 83 30.1
Gohir.D07G126100 Gossypium hirsutum HOM05D002739 ORTHO05D002877 6.1e-08 61.2 83 30.1
PSO384G1869 Papaver somniferum HOM05D002739 ORTHO05D002877 1.0e-07 60.5 113 29.2
CSS0000269 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.4e-07 60.1 107 29.0
CSS0014844 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.4e-07 60.1 107 29.0
CSS0048223 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.4e-07 60.1 107 29.0
PSO349G0096 Papaver somniferum HOM05D002739 ORTHO05D002877 1.4e-07 60.1 102 31.4
CSS0046368 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.8e-07 59.7 82 30.5
PSO384G1879 Papaver somniferum HOM05D002739 ORTHO05D002877 1.8e-07 59.7 82 28.0
Sc10g0004220 Simmondsia chinensis HOM05D002739 ORTHO05D002877 1.8e-07 59.7 83 30.1
PSO349G0104 Papaver somniferum HOM05D002739 ORTHO05D002877 3.0e-07 58.9 117 31.6
Potri.009G049300 Populus trichocarpa HOM05D002739 ORTHO05D002877 1.1e-06 57.0 58 37.9
RcHm_v2.0_Chr7g0218541 Rosa chinensis HOM05D002739 ORTHO05D002877 1.1e-06 57.0 110 27.3
PSO765G0023 Papaver somniferum HOM05D002739 ORTHO05D002877 1.5e-06 56.6 103 34.0
Nn7g36442 Nelumbo nucifera HOM05D002739 ORTHO05D002877 2.0e-06 56.2 103 26.2
Nn7g36457 Nelumbo nucifera HOM05D002739 ORTHO05D002877 2.0e-06 56.2 103 26.2
Nn7g38448 Nelumbo nucifera HOM05D002739 ORTHO05D002877 2.0e-06 56.2 103 26.2
ATR0721G129 Amborella trichopoda HOM05D002739 ORTHO05D002877 3.3e-06 55.5 53 45.3
Aqoxy2G00280 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 3.3e-06 55.5 73 34.2
PSO339G2204 Papaver somniferum HOM05D002739 ORTHO05D002877 3.3e-06 55.5 102 32.4
Aqoxy2G00284 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 4.4e-06 55.1 104 26.9
Cfa012335 Carpinus fangiana HOM05D004409 ORTHO05D005292 4.4e-06 55.1 111 30.6
Gorai.001G136100 Gossypium raimondii HOM05D002739 ORTHO05D002877 4.4e-06 55.1 81 27.2
C09p37510 Brassica napus HOM05D004489 ORTHO05D032456 7.4e-06 54.3 82 36.6
BolC9t56581H Brassica oleracea HOM05D004489 ORTHO05D032456 7.4e-06 54.3 82 36.6
SMO236G0006 Selaginella moellendorffii HOM05D038626 ORTHO05D375303 7.4e-06 54.3 74 36.5


User provided reference genes

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