Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G056800 Prunus persica HOM05D007736 ORTHO05D009783 5.4e-177 624.4 354 100.0
Prupe.6G356600 Prunus persica HOM05D007736 ORTHO05D009783 2.3e-119 433.0 351 68.7
MD04G1236600 Malus domestica HOM05D007736 ORTHO05D009783 2.4e-100 369.8 325 62.5
RcHm_v2.0_Chr3g0448601 Rosa chinensis HOM05D007736 ORTHO05D009783 2.7e-64 250.0 297 49.2
FAN05G0537 Fragaria x ananassa HOM05D007736 ORTHO05D009783 6.1e-56 222.2 303 46.9
MD12G1255900 Malus domestica HOM05D007736 ORTHO05D009783 2.3e-55 220.3 166 68.7
FAN05G0165 Fragaria x ananassa HOM05D007736 ORTHO05D009783 8.9e-55 218.4 301 46.2
FAN14G5928 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.5e-54 217.6 300 46.7
FAN02G1431 Fragaria x ananassa HOM05D007736 ORTHO05D009783 2.0e-54 217.2 297 47.1
FAN09G0667 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.3e-50 204.5 305 45.9
FvH4_6g01062 Fragaria vesca HOM05D000868 ORTHO05D000711 1.7e-50 204.1 292 46.2
CiPaw.05G040000 Carya illinoinensis HOM05D007736 ORTHO05D009783 6.6e-34 149.1 145 52.4
MELO3C028798.2 Cucumis melo HOM05D007736 ORTHO05D009783 1.9e-33 147.5 127 56.7
Cfa021836 Carpinus fangiana HOM05D007736 ORTHO05D009783 4.3e-33 146.4 134 56.0
Sed0025125 Sechium edule HOM05D007736 ORTHO05D009783 4.3e-33 146.4 394 31.2
Haze_10792 Corylus avellana HOM05D007736 ORTHO05D009783 5.6e-33 146.0 134 56.0
ClCG09G014560 Citrullus lanatus HOM05D007736 ORTHO05D009783 1.2e-32 144.8 407 31.4
Eucgr.I02697 Eucalyptus grandis HOM05D007736 ORTHO05D009783 1.2e-32 144.8 148 52.7
CsaV3_7G022310 Cucumis sativus L. HOM05D007736 ORTHO05D009783 3.6e-32 143.3 127 54.3
Psat1g218640 Pisum sativum HOM05D007736 ORTHO05D009783 8.1e-32 142.1 157 49.0
PGR142G3153 Punica granatum HOM05D007736 ORTHO05D009783 1.8e-31 141.0 129 52.7
arahy.Tifrunner.gnm1.ann1.JZ71MD Arachis hypogaea HOM05D007736 ORTHO05D009783 2.3e-31 140.6 185 43.2
Ca_00110_v3 Cicer arietinum L. HOM05D007736 ORTHO05D009783 3.1e-31 140.2 152 48.0
Medtr2g008130 Medicago truncatula HOM05D007736 ORTHO05D009783 3.1e-31 140.2 158 46.8
arahy.Tifrunner.gnm1.ann1.40XV2D Arachis hypogaea HOM05D007736 ORTHO05D009783 4.0e-31 139.8 156 48.1
Cpa.g.sc2.48 Carica papaya HOM05D007736 ORTHO05D009783 5.2e-31 139.4 150 49.3
Glyma.15G050700 Glycine max HOM05D007736 ORTHO05D009783 1.2e-30 138.3 118 55.9
Sed0013332 Sechium edule HOM05D007736 ORTHO05D009783 2.6e-30 137.1 146 49.3
TWI14G1332 Tripterygium wilfordii HOM05D007736 ORTHO05D009783 5.8e-30 136.0 128 50.8
Dinv19331 Davidia involucrata HOM05D007736 ORTHO05D009783 7.5e-30 135.6 153 47.1
Glyma.08G181600 Glycine max HOM05D007736 ORTHO05D009783 2.2e-29 134.0 156 44.9
Ciclev10028677m.g Citrus clementina HOM05D007736 ORTHO05D009783 1.4e-28 131.3 323 34.1
Phvul.006G209200 Phaseolus vulgaris HOM05D007736 ORTHO05D009783 1.4e-28 131.3 146 48.6
Lj6g0003665 Lotus japonicus HOM05D007736 ORTHO05D009783 4.1e-28 129.8 288 32.3
Manes.04G057900 Manihot esculenta HOM05D007736 ORTHO05D009783 2.7e-27 127.1 365 32.1
VMungo0540G1970 Vigna mungo HOM05D007736 ORTHO05D009783 6.0e-27 125.9 143 48.3
Dinv24237 Davidia involucrata HOM05D007736 ORTHO05D009783 2.3e-26 124.0 218 37.6
QL11p018598 Quercus lobata HOM05D007736 ORTHO05D009783 2.3e-26 124.0 114 56.1
Thecc.02G144400 Theobroma cacao HOM05D007736 ORTHO05D009783 5.1e-26 122.9 115 49.6
Lj5P244T47 Lonicera japonica HOM05D007736 ORTHO05D009783 8.6e-26 122.1 140 46.4
COL.COLO4_20877 Corchorus olitorius HOM05D007736 ORTHO05D009783 2.5e-25 120.6 138 40.6
Sabra12G0012700 Salix brachista HOM05D007736 ORTHO05D009783 2.5e-25 120.6 132 44.7
Potri.012G020400 Populus trichocarpa HOM05D007736 ORTHO05D009783 1.6e-24 117.9 147 42.9
Potri.015G008200 Populus trichocarpa HOM05D007736 ORTHO05D009783 4.7e-24 116.3 134 47.8
Rhsim11G0133400 Rhododendron simsii HOM05D007736 ORTHO05D009783 6.2e-24 115.9 136 44.9
Sc16g0009620 Simmondsia chinensis HOM05D007736 ORTHO05D009783 8.1e-24 115.5 201 37.3
Sabra15G0006300 Salix brachista HOM05D007736 ORTHO05D009783 1.1e-23 115.2 204 39.2
Actinidia00233 Actinidia chinensis HOM05D007736 ORTHO05D009783 6.8e-23 112.5 312 31.4
AUR62006887 Chenopodium quinoa HOM05D007736 ORTHO05D009783 8.9e-23 112.1 162 45.7
Lalb_Chr20g0123201 Lupinus albus HOM05D007736 ORTHO05D009783 8.9e-23 112.1 118 47.5
EL10Ac4g09677 Beta vulgaris HOM05D007736 ORTHO05D009783 1.2e-22 111.7 116 49.1
Atru.chr6.1122 Acer truncatum HOM05D007736 ORTHO05D009783 1.5e-22 111.3 305 31.1
Actinidia38961 Actinidia chinensis HOM05D007736 ORTHO05D009783 1.5e-22 111.3 221 36.2
Cc02_g21990 Coffea canephora HOM05D007736 ORTHO05D009783 3.4e-22 110.2 124 46.0
HanXRQChr16g0514111 Helianthus annuus HOM05D007736 ORTHO05D009783 4.4e-22 109.8 152 40.8
AUR62000538 Chenopodium quinoa HOM05D007736 ORTHO05D009783 5.8e-22 109.4 161 43.5
Lsat_1_v5_gn_5_106541 Lactuca sativa HOM05D007736 ORTHO05D009783 5.8e-22 109.4 124 42.7
TAR625G1059 Trochodendron aralioides HOM05D007736 ORTHO05D009783 2.2e-21 107.5 123 41.5
Ah.06g188730 Amaranthus hybridus HOM05D007736 ORTHO05D009783 2.9e-21 107.1 171 38.6
Nn1g06123 Nelumbo nucifera HOM05D007736 ORTHO05D009783 8.4e-21 105.5 115 47.8
Hund21796 Selenicereus undatus HOM05D007736 ORTHO05D009783 8.4e-21 105.5 186 36.0
vmacro01801 Vaccinium macrocarpon HOM05D007736 ORTHO05D009783 8.4e-21 105.5 143 44.8
TPR.G19753 Trifolium pratense HOM05D007736 ORTHO05D009783 1.9e-20 104.4 141 40.4
DCAR_021830 Daucus carota HOM05D007736 ORTHO05D009783 2.7e-19 100.5 182 36.8
MSTRG.27826 Avicennia marina HOM05D007736 ORTHO05D009783 7.8e-19 99.0 128 41.4
Nitab4.5_0000249g0440 Nicotiana tabacum HOM05D007736 ORTHO05D009783 3.9e-18 96.7 134 40.3
ATR0772G143 Amborella trichopoda HOM05D007736 ORTHO05D009783 8.7e-18 95.5 203 34.0
Sopen01g047310 Solanum pennellii HOM05D007736 ORTHO05D009783 8.7e-18 95.5 115 43.5
TAR381G1413 Trochodendron aralioides HOM05D007736 ORTHO05D009783 1.1e-17 95.1 92 50.0
MSTRG.5252 Avicennia marina HOM05D007736 ORTHO05D009783 1.9e-17 94.4 196 34.7
PGSC0003DMG400029771 Solanum tuberosum HOM05D007736 ORTHO05D009783 7.3e-17 92.4 130 40.0
Migut.N01016 Erythranthe guttata HOM05D007736 ORTHO05D009783 2.1e-16 90.9 164 34.1
Solyc01g104790.4 Solanum lycopersicum HOM05D007736 ORTHO05D009783 2.1e-16 90.9 128 40.6
Nitab4.5_0014357g0010 Nicotiana tabacum HOM05D007736 ORTHO05D009783 2.8e-16 90.5 141 36.9
unitig_26.g9583 Utricularia gibba HOM05D007736 ORTHO05D009783 8.1e-16 89.0 117 37.6
CDE02G1981 Ceratophyllum demersum HOM05D007736 ORTHO05D009783 9.0e-15 85.5 173 33.5
Aqoxy4G00650 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 1.2e-14 85.1 109 40.4
CAN.G523.104 Capsicum annuum HOM05D007736 ORTHO05D009783 2.0e-14 84.3 126 36.5
Aqoxy5G02135 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 3.8e-13 80.1 109 39.4
ECA234G2384 Erigeron canadensis HOM05D007736 ORTHO05D009783 3.2e-12 77.0 128 35.2
HanXRQChr10g0289121 Helianthus annuus HOM05D007736 ORTHO05D009783 7.1e-12 75.9 148 34.5
SGA_v2.0_scaffold45G17286 Striga asiatica HOM05D007736 ORTHO05D009783 1.0e-10 72.0 134 32.1
Os06g0468400 Oryza sativa ssp. japonica HOM05D007736 ORTHO05D009783 7.3e-09 65.9 105 38.1
Zm00001eb382360 Zea mays HOM05D007736 ORTHO05D009783 1.3e-08 65.1 226 26.5


User provided reference genes

Program Settings