Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G048100 Prunus persica HOM05D010052 ORTHO05D010666 5.8e-141 504.2 256 100.0
MD12G1087900 Malus domestica HOM05D010052 ORTHO05D010666 4.2e-107 391.7 254 76.8
MD07G1151300 Malus domestica HOM05D010052 ORTHO05D010666 1.4e-102 376.7 254 74.4
FvH4_6g24970 Fragaria vesca HOM05D010052 ORTHO05D010666 2.5e-75 286.2 255 58.4
FAN09G4754 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.2e-74 283.9 252 59.9
FAN14G1910 Fragaria x ananassa HOM05D010052 ORTHO05D010666 8.3e-71 271.2 247 57.9
MD12G1039100 Malus domestica HOM05D010052 ORTHO05D010666 7.1e-38 161.8 238 41.2
MD14G1037900 Malus domestica HOM05D010052 ORTHO05D010666 3.3e-35 152.9 241 37.8
RcHm_v2.0_Chr2g0124701 Rosa chinensis HOM05D010052 ORTHO05D010666 1.6e-34 150.6 104 67.3
MD14G1037800 Malus domestica HOM05D010052 ORTHO05D010666 2.0e-32 143.7 254 35.8
Prupe.7G096500 Prunus persica HOM05D010052 ORTHO05D010666 2.0e-32 143.7 186 40.9
Prupe.7G096700 Prunus persica HOM05D010052 ORTHO05D010666 1.9e-30 137.1 176 45.5
Prupe.7G096300 Prunus persica HOM05D010052 ORTHO05D010666 2.5e-27 126.7 228 33.8
RcHm_v2.0_Chr3g0475771 Rosa chinensis HOM05D010052 ORTHO05D010666 6.2e-26 122.1 225 37.8
RcHm_v2.0_Chr5g0073621 Rosa chinensis HOM05D010052 ORTHO05D010666 8.2e-26 121.7 253 32.8
FAN05G5055 Fragaria x ananassa HOM05D010052 ORTHO05D010666 2.4e-25 120.2 129 51.9
FAN11G3829 Fragaria x ananassa HOM05D010052 ORTHO05D010666 2.2e-23 113.6 230 32.6
FAN18G3409 Fragaria x ananassa HOM05D010052 ORTHO05D010666 3.8e-23 112.8 243 30.5
FvH4_5g22901 Fragaria vesca HOM05D010052 ORTHO05D010666 6.5e-23 112.1 243 30.5
Atru.chr8.1376 Acer truncatum HOM05D015120 ORTHO05D010666 1.1e-22 111.3 234 34.2
Cpa.g.sc104.41 Carica papaya HOM05D015120 ORTHO05D010825 1.9e-22 110.5 255 31.4
FAN13G1417 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.9e-22 110.5 222 33.8
FvH4_3g40821 Fragaria vesca HOM05D010052 ORTHO05D010666 2.5e-22 110.2 228 32.0
FAN04G3011 Fragaria x ananassa HOM05D010052 ORTHO05D010666 3.2e-22 109.8 242 29.3
RcHm_v2.0_Chr7g0211331 Rosa chinensis HOM05D010052 ORTHO05D010666 3.2e-22 109.8 231 33.3
FAN18G4184 Fragaria x ananassa HOM05D003158 ORTHO05D003560 2.7e-21 106.7 222 32.0
arahy.Tifrunner.gnm1.ann1.HURS1T Arachis hypogaea HOM05D002265 ORTHO05D002400 6.0e-21 105.5 176 34.1
Ciclev10013330m.g Citrus clementina HOM05D015120 ORTHO05D010666 5.1e-20 102.4 210 31.4
COL.COLO4_32398 Corchorus olitorius HOM05D010991 ORTHO05D010825 2.4e-17 93.6 199 28.1
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 6.9e-17 92.0 183 31.1
Thecc.01G085100 Theobroma cacao HOM05D015120 ORTHO05D010666 6.9e-17 92.0 192 31.2
Sed0011968 Sechium edule HOM05D008136 ORTHO05D002052 1.5e-16 90.9 230 28.3
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 3.4e-16 89.7 194 29.4
Thhalv10010982m.g Eutrema salsugineum HOM05D008136 ORTHO05D002052 1.0e-15 88.2 240 28.8
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 2.9e-15 86.7 195 29.7
RcHm_v2.0_Chr3g0475751 Rosa chinensis HOM05D009874 ORTHO05D010825 6.5e-15 85.5 218 31.7
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 8.5e-15 85.1 228 26.3
FvH4_6g20210 Fragaria vesca HOM05D009874 ORTHO05D010825 2.5e-14 83.6 214 29.4
FAN14G2012 Fragaria x ananassa HOM05D009874 ORTHO05D010825 2.5e-14 83.6 214 29.0
TAR633G1301 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.5e-14 83.6 187 31.0
FAN05G0496 Fragaria x ananassa HOM05D009874 ORTHO05D010825 5.5e-14 82.4 225 28.4
TWI74G0144 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 5.5e-14 82.4 192 29.2
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.5e-14 82.4 176 31.8
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.5e-14 82.4 188 30.9
Duzib106G1810 Durio zibethinus HOM05D008136 ORTHO05D002052 9.4e-14 81.6 206 30.6
Sp5g09840 Schrenkiella parvula HOM05D008136 ORTHO05D002052 1.2e-13 81.3 222 28.8
TWI53G0569 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 1.2e-13 81.3 191 33.0
CANSAT64G0025 Cannabis sativa HOM05D008136 ORTHO05D002052 2.1e-13 80.5 155 31.0
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 2.1e-13 80.5 174 31.6
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.1e-13 80.5 173 30.6
BcaB01g00366 Brassica carinata HOM05D008136 ORTHO05D002052 2.7e-13 80.1 205 27.8
AT3G52460 Arabidopsis thaliana HOM05D008136 ORTHO05D002052 3.6e-13 79.7 205 28.8
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.6e-13 79.7 195 31.3
Prupe.7G096800 Prunus persica HOM05D009874 ORTHO05D010825 4.6e-13 79.3 205 28.8
RcHm_v2.0_Chr7g0211341 Rosa chinensis HOM05D010052 ORTHO05D010666 4.6e-13 79.3 199 30.7
BcaC07g39611 Brassica carinata HOM05D008136 ORTHO05D002052 7.9e-13 78.6 240 25.8
A09p45540 Brassica napus HOM05D008136 ORTHO05D002052 7.9e-13 78.6 240 26.2
C08p27700 Brassica napus HOM05D008136 ORTHO05D002052 7.9e-13 78.6 240 25.8
BolC8t50390H Brassica oleracea HOM05D008136 ORTHO05D002052 7.9e-13 78.6 240 25.8
BraA09t40016Z Brassica rapa HOM05D008136 ORTHO05D002052 7.9e-13 78.6 240 26.2
Cpa.g.sc129.12 Carica papaya HOM05D015120 ORTHO05D010666 7.9e-13 78.6 209 29.2
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 7.9e-13 78.6 185 30.3
Carub.0005s1885 Capsella rubella HOM05D008136 ORTHO05D002052 1.8e-12 77.4 196 29.6
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 1.8e-12 77.4 177 28.8
Eucgr.A02595 Eucalyptus grandis HOM05D008136 ORTHO05D002052 3.0e-12 76.6 201 28.9
BcaC06g32916 Brassica carinata HOM05D008136 ORTHO05D002052 3.9e-12 76.3 240 27.1
Potri.016G071100 Populus trichocarpa HOM05D009874 ORTHO05D010825 3.9e-12 76.3 202 29.2
COL.COLO4_29586 Corchorus olitorius HOM05D008136 ORTHO05D002052 5.1e-12 75.9 179 33.5
FAN05G5202 Fragaria x ananassa HOM05D009874 ORTHO05D010825 5.1e-12 75.9 214 28.0
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.1e-12 75.9 198 30.8
MBI01_g04539_MAGBIO Magnolia biondii HOM05D002687 ORTHO05D002052 6.7e-12 75.5 195 29.7
Rhsim03G0065900 Rhododendron simsii HOM05D008136 ORTHO05D002052 8.8e-12 75.1 201 30.8
CARHR162230 Cardamine hirsuta HOM05D008136 ORTHO05D002052 1.1e-11 74.7 239 27.6
Duzib093G0447 Durio zibethinus HOM05D008136 ORTHO05D002052 1.5e-11 74.3 228 28.1
QL07p036911 Quercus lobata HOM05D008136 ORTHO05D002052 1.5e-11 74.3 195 25.6
MD12G1039000 Malus domestica HOM05D009874 ORTHO05D010825 3.3e-11 73.2 209 28.2
Manes.08G032700 Manihot esculenta HOM05D008136 ORTHO05D002052 3.3e-11 73.2 181 27.6
AUR62001543 Chenopodium quinoa HOM05D002687 ORTHO05D002052 5.7e-11 72.4 199 28.6
BcaC06g33391 Brassica carinata HOM05D008136 ORTHO05D002052 1.3e-10 71.2 209 28.7
C07p46980 Brassica napus HOM05D008136 ORTHO05D002052 1.3e-10 71.2 209 28.7
BolC7t45215H Brassica oleracea HOM05D008136 ORTHO05D002052 1.3e-10 71.2 209 28.7
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 1.3e-10 71.2 198 28.8
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 2.2e-10 70.5 222 25.2
Gohir.A09G134801 Gossypium hirsutum HOM05D008136 ORTHO05D002052 2.2e-10 70.5 135 28.9
CiPaw.10G016800 Carya illinoinensis HOM05D008136 ORTHO05D002052 2.8e-10 70.1 183 31.7
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 2.8e-10 70.1 199 26.6
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 2.8e-10 70.1 202 28.2
AL5G33110 Arabidopsis lyrata HOM05D008136 ORTHO05D002052 3.7e-10 69.7 205 25.9
BcaB02g10079 Brassica carinata HOM05D002687 ORTHO05D002052 3.7e-10 69.7 209 26.8
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 3.7e-10 69.7 204 25.5
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 3.7e-10 69.7 204 25.5
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 3.7e-10 69.7 204 25.5
BraA03t13990Z Brassica rapa HOM05D008136 ORTHO05D002052 4.8e-10 69.3 196 28.1
Nn2g14283 Nelumbo nucifera HOM05D002687 ORTHO05D002052 6.3e-10 68.9 191 27.2
A03p48880 Brassica napus HOM05D008136 ORTHO05D002052 8.2e-10 68.6 196 28.1
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 8.2e-10 68.6 194 26.3
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 8.2e-10 68.6 194 26.3
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 1.1e-09 68.2 199 27.1
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 1.4e-09 67.8 174 28.2
Cc01_g10170 Coffea canephora HOM05D000980 ORTHO05D000649 1.8e-09 67.4 158 27.2
Aqoxy1G00685 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 3.1e-09 66.6 194 24.2
CiPaw.10G094600 Carya illinoinensis HOM05D002687 ORTHO05D002052 3.1e-09 66.6 173 26.0
Sc12g0004850 Simmondsia chinensis HOM05D002687 ORTHO05D002052 3.1e-09 66.6 151 27.8
Atru.chr3.3498 Acer truncatum HOM05D000980 ORTHO05D000649 6.9e-09 65.5 159 27.7
CiPaw.09G020300 Carya illinoinensis HOM05D002687 ORTHO05D002052 6.9e-09 65.5 157 28.7
CDE04G2921 Ceratophyllum demersum HOM05D002687 ORTHO05D002052 6.9e-09 65.5 192 28.1
PGR004G1626 Punica granatum HOM05D008136 ORTHO05D002052 6.9e-09 65.5 234 25.6
Glyma.15G065400 Glycine max HOM05D000733 ORTHO05D000649 1.2e-08 64.7 181 28.2
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.2e-08 64.7 233 22.3
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.5e-08 64.3 230 23.0
Sp4g10070 Schrenkiella parvula HOM05D002687 ORTHO05D002052 1.5e-08 64.3 218 23.9
Glyma.13G248600 Glycine max HOM05D000733 ORTHO05D000649 2.0e-08 63.9 182 29.1
Cfa016687 Carpinus fangiana HOM05D008136 ORTHO05D002052 2.6e-08 63.5 247 24.3
Cc06_g06470 Coffea canephora HOM05D022101 ORTHO05D022209 2.6e-08 63.5 198 26.8
HanXRQChr02g0055291 Helianthus annuus HOM05D000733 ORTHO05D000649 2.6e-08 63.5 193 27.5
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 4.5e-08 62.8 191 27.2
MD12G1038800 Malus domestica HOM05D002687 ORTHO05D002052 4.5e-08 62.8 168 25.6
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 4.5e-08 62.8 171 25.7
TPR.G19617 Trifolium pratense HOM05D000980 ORTHO05D000649 4.5e-08 62.8 167 28.7
A07p18100 Brassica napus HOM05D002687 ORTHO05D002052 5.9e-08 62.4 222 24.3
BraA07t29528Z Brassica rapa HOM05D002687 ORTHO05D002052 5.9e-08 62.4 222 24.3
Manes.11G153200 Manihot esculenta HOM05D000980 ORTHO05D000649 5.9e-08 62.4 140 25.0
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 1.0e-07 61.6 190 27.9
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 1.3e-07 61.2 165 24.2
HanXRQChr13g0403571 Helianthus annuus HOM05D000733 ORTHO05D000649 1.3e-07 61.2 146 28.1
TWI75G0760 Tripterygium wilfordii HOM05D000733 ORTHO05D000649 1.3e-07 61.2 134 29.9
TAR636G0890 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.3e-07 61.2 164 24.4
Lj1P303T22 Lonicera japonica HOM05D023306 ORTHO05D002052 1.7e-07 60.8 151 25.8
Medtr2g011350 Medicago truncatula HOM05D000980 ORTHO05D000649 1.7e-07 60.8 138 31.2
Psat1g209680 Pisum sativum HOM05D000733 ORTHO05D000649 1.7e-07 60.8 195 28.7
Lj1g0003825 Lotus japonicus HOM05D013176 ORTHO05D010666 2.2e-07 60.5 189 29.1
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 2.9e-07 60.1 222 25.7
A03p26690 Brassica napus HOM05D002687 ORTHO05D002052 2.9e-07 60.1 177 24.3
BraA03t11881Z Brassica rapa HOM05D002687 ORTHO05D002052 2.9e-07 60.1 177 24.3
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 3.8e-07 59.7 194 26.3
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 3.8e-07 59.7 189 25.9
RcHm_v2.0_Chr3g0475711 Rosa chinensis HOM05D002687 ORTHO05D002052 3.8e-07 59.7 170 23.5
Haze_08138 Corylus avellana HOM05D009874 ORTHO05D010825 5.0e-07 59.3 188 22.9
TAR636G1837 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.0e-07 59.3 195 24.6
C03p31980 Brassica napus HOM05D002687 ORTHO05D002052 6.5e-07 58.9 178 24.2
COL.COLO4_33306 Corchorus olitorius HOM05D010991 ORTHO05D010825 6.5e-07 58.9 135 25.9
Lj6g0019562 Lotus japonicus HOM05D000733 ORTHO05D000649 6.5e-07 58.9 158 29.7
BcaC01g04930 Brassica carinata HOM05D002687 ORTHO05D002052 8.5e-07 58.5 204 23.5
BolC3t15541H Brassica oleracea HOM05D002687 ORTHO05D002052 8.5e-07 58.5 204 23.5
Carub.0001s0701 Capsella rubella HOM05D002687 ORTHO05D002052 8.5e-07 58.5 220 24.5
Duzib168G0761 Durio zibethinus HOM05D000733 ORTHO05D000649 8.5e-07 58.5 132 26.5
Gorai.009G089500 Gossypium raimondii HOM05D000733 ORTHO05D000649 8.5e-07 58.5 134 29.1
Manes.04G012200 Manihot esculenta HOM05D000733 ORTHO05D000649 8.5e-07 58.5 156 23.1
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 8.5e-07 58.5 140 24.3
FvH4_6g20177 Fragaria vesca HOM05D002687 ORTHO05D002052 1.1e-06 58.2 177 25.4
Lsat_1_v5_gn_6_41740 Lactuca sativa HOM05D000733 ORTHO05D000649 1.1e-06 58.2 151 26.5
TPR.G35571 Trifolium pratense HOM05D002687 ORTHO05D002052 1.1e-06 58.2 119 32.8
MSTRG.5900 Avicennia marina HOM05D012176 ORTHO05D014468 1.4e-06 57.8 196 26.0
Cfa012524 Carpinus fangiana HOM05D009874 ORTHO05D010825 1.4e-06 57.8 189 21.7
COL.COLO4_19217 Corchorus olitorius HOM05D000980 ORTHO05D000649 1.4e-06 57.8 102 29.4
COL.COLO4_19242 Corchorus olitorius HOM05D015715 ORTHO05D015080 1.4e-06 57.8 147 31.3
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.4e-06 57.8 193 24.9
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 1.4e-06 57.8 173 23.7
arahy.Tifrunner.gnm1.ann1.2X3X0W Arachis hypogaea HOM05D000980 ORTHO05D000649 1.9e-06 57.4 150 29.3
arahy.Tifrunner.gnm1.ann1.ECG1V9 Arachis hypogaea HOM05D000980 ORTHO05D000649 1.9e-06 57.4 150 29.3
COL.COLO4_04928 Corchorus olitorius HOM05D010991 ORTHO05D010825 1.9e-06 57.4 135 25.2
COL.COLO4_08616 Corchorus olitorius HOM05D010991 ORTHO05D010825 1.9e-06 57.4 156 24.4
Manes.09G046600 Manihot esculenta HOM05D002687 ORTHO05D002052 1.9e-06 57.4 172 22.1
Phvul.006G194400 Phaseolus vulgaris HOM05D000733 ORTHO05D000649 1.9e-06 57.4 158 28.5
QL07p036898 Quercus lobata HOM05D028206 ORTHO05D030521 1.9e-06 57.4 149 30.2
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.5e-06 57.0 220 23.6
Duzib170G0419 Durio zibethinus HOM05D000980 ORTHO05D000649 2.5e-06 57.0 135 28.1
FAN14G3199 Fragaria x ananassa HOM05D029328 ORTHO05D002052 2.5e-06 57.0 173 25.4
Gorai.006G104100 Gossypium raimondii HOM05D000980 ORTHO05D000649 2.5e-06 57.0 166 24.1
QL01p014807 Quercus lobata HOM05D000733 ORTHO05D000649 2.5e-06 57.0 170 25.9
VMungo0540G2319 Vigna mungo HOM05D000733 ORTHO05D000649 2.5e-06 57.0 162 28.4
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 3.2e-06 56.6 202 24.3
Thhalv10002076m.g Eutrema salsugineum HOM05D002687 ORTHO05D002052 3.2e-06 56.6 209 23.9
Gohir.A09G087800 Gossypium hirsutum HOM05D000980 ORTHO05D000649 3.2e-06 56.6 166 24.1
THA.LOC104800513 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 3.2e-06 56.6 107 25.2
Aa31LG5G8690 Aethionema arabicum HOM05D002687 ORTHO05D002052 4.2e-06 56.2 168 22.0
Ca_00222_v3 Cicer arietinum L. HOM05D001102 ORTHO05D001018 4.2e-06 56.2 186 24.7
COL.COLO4_03320 Corchorus olitorius HOM05D010991 ORTHO05D010825 4.2e-06 56.2 136 25.7
Gohir.D09G087700 Gossypium hirsutum HOM05D000733 ORTHO05D000649 4.2e-06 56.2 166 24.7
Lj1C294T11 Lonicera japonica HOM05D023306 ORTHO05D012721 4.2e-06 56.2 174 23.0
AL4G21170 Arabidopsis lyrata HOM05D002687 ORTHO05D002052 5.5e-06 55.8 198 23.7
Gohir.A05G085600 Gossypium hirsutum HOM05D000733 ORTHO05D000649 5.5e-06 55.8 156 26.3
QL07p036881 Quercus lobata HOM05D028206 ORTHO05D030521 5.5e-06 55.8 239 26.8
THA.LOC104826444 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 5.5e-06 55.8 168 24.4
Aqoxy1G01055 Aquilegia oxysepala HOM05D000980 ORTHO05D000649 7.2e-06 55.5 153 22.9
Gohir.D05G087600 Gossypium hirsutum HOM05D000733 ORTHO05D000649 7.2e-06 55.5 134 28.4
DCAR_015500 Daucus carota HOM05D000980 ORTHO05D000649 9.4e-06 55.1 166 25.9
Rhsim13G0101800 Rhododendron simsii HOM05D000733 ORTHO05D000649 9.4e-06 55.1 163 23.9


User provided reference genes

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