Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G046500 Prunus persica HOM05D005522 ORTHO05D007414 1.1e-267 926.0 458 100.0
Prupe.7G046300 Prunus persica HOM05D005522 ORTHO05D007414 3.5e-245 851.3 508 87.0
MD00G1074000 Malus domestica HOM05D005522 ORTHO05D007414 4.6e-229 797.7 511 80.2
RcHm_v2.0_Chr2g0124941 Rosa chinensis HOM05D005522 ORTHO05D007414 8.1e-226 786.9 507 79.3
FvH4_6g25110 Fragaria vesca HOM05D005522 ORTHO05D007414 2.0e-224 782.3 507 78.5
FAN14G2465 Fragaria x ananassa HOM05D005522 ORTHO05D007414 2.0e-224 782.3 507 78.5
FAN05G4952 Fragaria x ananassa HOM05D005522 ORTHO05D007414 4.4e-224 781.2 507 78.5
FAN09G3441 Fragaria x ananassa HOM05D005522 ORTHO05D007414 5.8e-224 780.8 493 79.9
FAN02G3261 Fragaria x ananassa HOM05D005522 ORTHO05D007414 3.8e-223 778.1 507 77.9
CANSAT80G2685 Cannabis sativa HOM05D005522 ORTHO05D007414 2.0e-216 755.7 513 74.7
Duzib093G0281 Durio zibethinus HOM05D005522 ORTHO05D007414 7.6e-216 753.8 514 73.9
Cfa016729 Carpinus fangiana HOM05D005522 ORTHO05D007414 9.9e-216 753.4 511 75.3
Haze_19737 Corylus avellana HOM05D005522 ORTHO05D007414 1.7e-215 752.7 511 75.1
CANSAT80G0471 Cannabis sativa HOM05D005522 ORTHO05D007414 6.4e-215 750.7 513 74.3
CsaV3_UNG143090 Cucumis sativus L. HOM05D005522 ORTHO05D007414 1.1e-214 750.0 504 75.0
COL.COLO4_33937 Corchorus olitorius HOM05D005522 ORTHO05D007414 1.4e-214 749.6 512 74.0
Thecc.05G141500 Theobroma cacao HOM05D005522 ORTHO05D007414 2.4e-214 748.8 514 73.2
MELO3C020736.2 Cucumis melo HOM05D005522 ORTHO05D007414 5.4e-214 747.7 504 74.6
Eucgr.A02267 Eucalyptus grandis HOM05D005522 ORTHO05D007414 5.4e-214 747.7 511 74.6
Manes.08G056700 Manihot esculenta HOM05D005522 ORTHO05D007414 1.6e-213 746.1 514 72.8
CiPaw.10G038000 Carya illinoinensis HOM05D005522 ORTHO05D007414 2.1e-213 745.7 511 72.8
ClCG04G004060 Citrullus lanatus HOM05D005522 ORTHO05D007414 2.7e-213 745.3 504 73.8
Dinv18487 Davidia involucrata HOM05D005522 ORTHO05D007414 6.0e-213 744.2 513 74.1
Sed0013105 Sechium edule HOM05D005522 ORTHO05D007414 7.8e-213 743.8 504 75.2
Gohir.A11G308400 Gossypium hirsutum HOM05D005522 ORTHO05D007414 2.3e-212 742.3 514 72.6
Atru.chr1.1278 Acer truncatum HOM05D005522 ORTHO05D007414 5.1e-212 741.1 513 73.3
Gorai.007G353900 Gossypium raimondii HOM05D005522 ORTHO05D007414 5.1e-212 741.1 514 72.6
Actinidia39175 Actinidia chinensis HOM05D005522 ORTHO05D007414 6.6e-212 740.7 514 73.7
TAR171G0004 Trochodendron aralioides HOM05D005522 ORTHO05D007414 3.3e-211 738.4 512 73.4
Hma1.2p1_0056F.1_g031850 Hydrangea macrophylla HOM05D005522 ORTHO05D007414 4.3e-211 738.0 513 73.7
Dinv04140 Davidia involucrata HOM05D005522 ORTHO05D007414 9.6e-211 736.9 514 73.2
CSS0038435 Camellia sinensis var. sinensis HOM05D005522 ORTHO05D007414 1.3e-210 736.5 513 73.1
Rhsim03G0034500 Rhododendron simsii HOM05D005522 ORTHO05D007414 1.6e-210 736.1 513 73.7
THA.LOC104816408 Tarenaya hassleriana HOM05D005522 ORTHO05D007414 2.1e-210 735.7 508 73.6
Cc06_g18590 Coffea canephora HOM05D005522 ORTHO05D007414 1.4e-209 733.0 514 72.6
Ca_21519_v3 Cicer arietinum L. HOM05D005522 ORTHO05D007414 1.8e-209 732.6 512 72.3
Thhalv10010214m.g Eutrema salsugineum HOM05D005522 ORTHO05D007414 3.1e-209 731.9 513 73.1
Medtr1g050360 Medicago truncatula HOM05D005522 ORTHO05D007414 3.1e-209 731.9 513 72.3
RhsimUnG0217500 Rhododendron simsii HOM05D005522 ORTHO05D007414 6.9e-209 730.7 536 70.9
VMungo0720G1534 Vigna mungo HOM05D005522 ORTHO05D007414 1.5e-208 729.6 511 71.6
Oeu062462.1 Olea europaea HOM05D005522 ORTHO05D007414 4.5e-208 728.0 514 72.4
Sp5g14030 Schrenkiella parvula HOM05D005522 ORTHO05D007414 4.5e-208 728.0 513 73.1
Lj2A394T33 Lonicera japonica HOM05D005522 ORTHO05D007414 9.9e-208 726.9 513 72.9
BcaB01g00861 Brassica carinata HOM05D005522 ORTHO05D007414 3.8e-207 724.9 513 72.5
Cpa.g.sc5.195 Carica papaya HOM05D005522 ORTHO05D007414 3.8e-207 724.9 513 72.3
MSTRG.19821 Avicennia marina HOM05D005522 ORTHO05D007414 8.4e-207 723.8 514 71.6
Aa31LG4G16570 Aethionema arabicum HOM05D005522 ORTHO05D007414 1.4e-206 723.0 513 71.9
HanXRQChr13g0391861 Helianthus annuus HOM05D005522 ORTHO05D007414 1.4e-206 723.0 514 72.0
BraA06t25053Z Brassica rapa HOM05D005522 ORTHO05D007414 2.4e-206 722.2 513 72.3
Lalb_Chr02g0156511 Lupinus albus HOM05D005522 ORTHO05D007414 3.2e-206 721.8 513 70.4
A06p19740 Brassica napus HOM05D005522 ORTHO05D007414 5.4e-206 721.1 513 72.3
Phvul.007G247900 Phaseolus vulgaris HOM05D005522 ORTHO05D007414 5.4e-206 721.1 513 70.8
Lj5g0015939 Lotus japonicus HOM05D005522 ORTHO05D007414 9.3e-206 720.3 513 70.8
Carub.0005s1405 Capsella rubella HOM05D005522 ORTHO05D007414 2.1e-205 719.2 513 71.3
BcaC01g01764 Brassica carinata HOM05D005522 ORTHO05D007414 2.7e-205 718.8 513 71.9
C03p72160 Brassica napus HOM05D005522 ORTHO05D007414 2.7e-205 718.8 513 71.9
BolC3t19512H Brassica oleracea HOM05D005522 ORTHO05D007414 2.7e-205 718.8 513 71.9
Aqoxy1G00339 Aquilegia oxysepala HOM05D005522 ORTHO05D007414 3.5e-205 718.4 514 71.0
PSO384G4421 Papaver somniferum HOM05D005522 ORTHO05D007414 3.5e-205 718.4 513 71.3
DCAR_020543 Daucus carota HOM05D005522 ORTHO05D007414 4.6e-205 718.0 503 72.6
Nitab4.5_0013059g0010 Nicotiana tabacum HOM05D005522 ORTHO05D007414 6.0e-205 717.6 511 72.0
AT3G47930 Arabidopsis thaliana HOM05D005522 ORTHO05D007414 7.9e-205 717.2 513 71.5
SGA_v2.0_scaffold69G23141 Striga asiatica HOM05D005522 ORTHO05D007414 7.9e-205 717.2 515 72.0
SalBow6G2663 Salvia bowleyana HOM05D005522 ORTHO05D007414 2.3e-204 715.7 509 71.3
AL5G27240 Arabidopsis lyrata HOM05D005522 ORTHO05D007414 3.9e-204 714.9 513 71.3
Ciclev10004603m.g Citrus clementina HOM05D005522 ORTHO05D007414 3.9e-204 714.9 500 74.0
Sopen10g030110 Solanum pennellii HOM05D005522 ORTHO05D007414 6.7e-204 714.1 508 72.2
Solyc10g079470.3 Solanum lycopersicum HOM05D005522 ORTHO05D007414 8.7e-204 713.8 508 72.2
Migut.J01682 Erythranthe guttata HOM05D005522 ORTHO05D007414 1.5e-203 713.0 511 71.2
Lsat_1_v5_gn_5_159221 Lactuca sativa HOM05D005522 ORTHO05D007414 2.5e-203 712.2 508 70.5
Ah.04g151150 Amaranthus hybridus HOM05D005522 ORTHO05D007414 3.3e-203 711.8 506 72.3
EL10Ac3g07189 Beta vulgaris HOM05D005522 ORTHO05D007414 3.3e-203 711.8 506 71.5
AUR62040849 Chenopodium quinoa HOM05D005522 ORTHO05D007414 2.8e-202 708.8 506 70.8
MBI03_g28429_MAGBIO Magnolia biondii HOM05D005522 ORTHO05D007414 3.6e-202 708.4 512 70.5
Hund24634 Selenicereus undatus HOM05D005522 ORTHO05D007414 3.6e-202 708.4 506 70.4
ECA248G3368 Erigeron canadensis HOM05D005522 ORTHO05D007414 4.8e-202 708.0 511 70.3
PGSC0003DMG400008132 Solanum tuberosum HOM05D005522 ORTHO05D007414 8.1e-202 707.2 512 71.5
Glyma.02G166300 Glycine max HOM05D005522 ORTHO05D007414 4.0e-201 704.9 513 70.0
TWI77G0538 Tripterygium wilfordii HOM05D005522 ORTHO05D007414 1.2e-200 703.4 513 70.0
Sc19g0008330 Simmondsia chinensis HOM05D005522 ORTHO05D007414 3.8e-199 698.4 509 69.4
vmacro07825 Vaccinium macrocarpon HOM05D005522 ORTHO05D007414 3.5e-197 691.8 518 69.1
HPP92_018215 Vanilla planifolia HOM05D005522 ORTHO05D007414 4.6e-197 691.4 504 69.2
MBI03_g36664_MAGBIO Magnolia biondii HOM05D005522 ORTHO05D007414 1.8e-193 679.5 512 68.8
Sabra16G0043500 Salix brachista HOM05D005522 ORTHO05D007414 5.8e-192 674.5 552 65.4
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 5.5e-190 667.9 505 67.1
Os11g0143500 Oryza sativa ssp. japonica HOM05D005522 ORTHO05D007414 3.5e-189 665.2 505 65.3
Zm00001eb093120 Zea mays HOM05D005522 ORTHO05D007414 3.5e-189 665.2 504 67.7
Os12g0139600 Oryza sativa ssp. japonica HOM05D005522 ORTHO05D007414 5.1e-188 661.4 505 65.0
ATR0721G040 Amborella trichopoda HOM05D005522 ORTHO05D007414 9.6e-187 657.1 516 64.7
Glyma.10G104100 Glycine max HOM05D005522 ORTHO05D007414 4.8e-186 654.8 487 68.4
Potri.016G040300 Populus trichocarpa HOM05D005522 ORTHO05D007414 9.0e-185 650.6 439 75.2
Peaxi162Scf00767g00611 Petunia axillaris HOM05D005522 ORTHO05D007414 2.0e-184 649.4 512 67.0
Nitab4.5_0002267g0070 Nicotiana tabacum HOM05D005522 ORTHO05D007414 1.9e-179 632.9 497 66.8
CARHR156640 Cardamine hirsuta HOM05D005522 ORTHO05D007414 2.6e-176 622.5 443 72.5
Gohir.D11G323800 Gossypium hirsutum HOM05D005522 ORTHO05D007414 4.2e-174 615.1 514 63.8
GSVIVG01033574001 Vitis vinifera HOM05D005522 ORTHO05D007414 5.7e-171 604.7 406 75.4
AUR62030366 Chenopodium quinoa HOM05D005522 ORTHO05D007414 4.7e-165 585.1 400 73.5
CAN.G641.42 Capsicum annuum HOM05D005522 ORTHO05D007414 1.4e-164 583.6 404 72.8
QL07p006599 Quercus lobata HOM05D005522 ORTHO05D007414 3.4e-147 525.8 358 73.5
Mapoly0077s0021 Marchantia polymorpha HOM05D005522 ORTHO05D007414 3.1e-145 519.2 533 50.3
Pp3c14_20870 Physcomitrium patens HOM05D005522 ORTHO05D007414 4.2e-142 508.8 541 50.5
SMO146G0252 Selaginella moellendorffii HOM05D005522 ORTHO05D007414 2.8e-133 479.6 505 48.7
CBR_g48422 Chara braunii HOM05D005522 ORTHO05D007414 9.8e-131 471.1 568 47.0
AagrBONN_evm.TU.Sc2ySwM_362.2734 Anthoceros agrestis HOM05D005522 ORTHO05D007414 5.4e-129 465.3 485 50.1
Psat6g119360 Pisum sativum HOM05D005522 ORTHO05D007414 3.5e-120 436.0 276 79.3
MD00G1048800 Malus domestica HOM05D005522 ORTHO05D007414 8.9e-116 421.4 282 78.0
Prupe.7G046600 Prunus persica HOM05D005522 ORTHO05D007414 3.2e-105 386.3 256 81.2
PRCOL_00005871 Prasinoderma coloniale HOM05D005522 ORTHO05D007414 3.9e-103 379.4 465 46.2
CsaV3_4G022170 Cucumis sativus L. HOM05D005522 ORTHO05D007414 5.1e-103 379.0 237 82.3
MCO07G495 Micromonas commoda HOM05D005522 ORTHO05D007414 1.1e-100 371.3 475 44.0
Cre13.g567100 Chlamydomonas reinhardtii HOM05D005522 ORTHO05D007414 1.9e-94 350.5 494 42.7
Dinv04141 Davidia involucrata HOM05D005522 ORTHO05D007414 6.0e-88 328.9 208 76.0
arahy.Tifrunner.gnm1.ann1.36JCD8 Arachis hypogaea HOM05D005522 ORTHO05D007414 3.7e-85 319.7 203 73.4
arahy.Tifrunner.gnm1.ann1.86D3P6 Arachis hypogaea HOM05D005522 ORTHO05D007414 4.8e-85 319.3 203 73.4
TPR.G8835 Trifolium pratense HOM05D005522 ORTHO05D007414 6.2e-85 318.9 203 73.9
SHI24609 Sapria himalayana HOM05D005522 ORTHO05D007414 2.0e-83 313.9 284 57.0
SEGI_02017 Sequoiadendron giganteum HOM05D005522 ORTHO05D007414 2.2e-82 310.5 287 53.3
SHI24612 Sapria himalayana HOM05D005522 ORTHO05D007414 1.3e-79 301.2 216 71.3
TPR.G4387 Trifolium pratense HOM05D005522 ORTHO05D007414 6.2e-77 292.4 274 59.9
BcaB02g10682 Brassica carinata HOM05D005522 ORTHO05D007414 3.0e-71 273.5 374 43.9
QL07p006605 Quercus lobata HOM05D005522 ORTHO05D007414 2.9e-58 230.3 154 76.6
Medtr0506s0040 Medicago truncatula HOM05D005522 ORTHO05D007414 6.5e-58 229.2 130 79.2
Oeu013025.1 Olea europaea HOM05D005522 ORTHO05D007414 1.3e-50 204.9 184 63.0
Potri.006G043232 Populus trichocarpa HOM05D005522 ORTHO05D007414 3.6e-40 170.2 125 67.2
Oeu024729.2 Olea europaea HOM05D005522 ORTHO05D007414 4.4e-38 163.3 130 69.2
MD12G1091400 Malus domestica HOM05D005522 ORTHO05D048680 8.5e-34 149.1 116 67.2
BcaB01g00373 Brassica carinata HOM05D005522 ORTHO05D007414 9.4e-33 145.6 98 75.5
C03p66920 Brassica napus HOM05D005522 ORTHO05D040474 1.7e-29 134.8 132 54.5
CARHR156650 Cardamine hirsuta HOM05D005522 ORTHO05D007414 7.8e-19 99.4 78 65.4
Sabra06G0029400 Salix brachista HOM05D002155 ORTHO05D002215 2.3e-18 97.8 74 67.6
Zm00001eb368650 Zea mays HOM05D001023 ORTHO05D000912 3.8e-18 97.1 76 65.8
Zm00001eb025280 Zea mays HOM05D005522 ORTHO05D048680 7.5e-14 82.8 47 78.7
Cfa022697 Carpinus fangiana HOM05D005522 ORTHO05D028644 5.4e-12 76.6 232 25.4
Mapoly0074s0031 Marchantia polymorpha HOM05D005522 ORTHO05D028644 4.6e-11 73.6 194 27.3
BcaB02g10683 Brassica carinata HOM05D005522 ORTHO05D007414 5.6e-09 66.6 48 68.8
AagrBONN_evm.TU.Sc2ySwM_344.347 Anthoceros agrestis HOM05D001113 ORTHO05D000968 1.6e-08 65.1 157 28.0
Sabra06G0029500 Salix brachista HOM05D005522 ORTHO05D007414 1.4e-07 62.0 97 42.3
COL.COLO4_18676 Corchorus olitorius HOM05D001113 ORTHO05D000968 2.3e-07 61.2 162 29.6
Phvul.009G257600 Phaseolus vulgaris HOM05D001113 ORTHO05D000968 5.2e-07 60.1 119 32.8
SMO236G0066 Selaginella moellendorffii HOM05D001113 ORTHO05D000968 5.2e-07 60.1 141 30.5
VMungo0251G1166 Vigna mungo HOM05D009237 ORTHO05D007414 2.0e-06 58.2 100 35.0
Psat0s1315g0480 Pisum sativum HOM05D001113 ORTHO05D000968 5.8e-06 56.6 107 29.9


User provided reference genes

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