Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G046400 Prunus persica HOM05D008152 ORTHO05D010231 5.3e-29 130.2 59 100.0
MD00G1073900 Malus domestica HOM05D008152 ORTHO05D010231 1.3e-24 115.5 59 86.4
MD12G1091200 Malus domestica HOM05D008152 ORTHO05D010231 1.3e-24 115.5 59 86.4
FvH4_6g25100 Fragaria vesca HOM05D008152 ORTHO05D010231 2.8e-22 107.8 60 81.7
RcHm_v2.0_Chr2g0124931 Rosa chinensis HOM05D008152 ORTHO05D010231 8.2e-22 106.3 60 81.7
FAN05G4131 Fragaria x ananassa HOM05D008152 ORTHO05D010231 1.4e-21 105.5 60 80.0
GSVIVG01033573001 Vitis vinifera HOM05D008152 ORTHO05D010231 1.4e-18 95.5 59 74.6
COL.COLO4_33936 Corchorus olitorius HOM05D008152 ORTHO05D010231 1.9e-18 95.1 59 74.6
FAN09G1661 Fragaria x ananassa HOM05D008152 ORTHO05D010231 1.2e-17 92.4 46 84.8
Glyma.03G128700 Glycine max HOM05D008152 ORTHO05D010231 1.6e-17 92.0 57 73.7
CSS0018961 Camellia sinensis var. sinensis HOM05D008152 ORTHO05D010231 2.1e-17 91.7 59 69.5
Gorai.006G133500 Gossypium raimondii HOM05D008152 ORTHO05D010231 3.6e-17 90.9 55 78.2
Duzib128G1278 Durio zibethinus HOM05D008152 ORTHO05D010231 4.6e-17 90.5 59 76.3
Gohir.D09G115470 Gossypium hirsutum HOM05D008152 ORTHO05D010231 4.6e-17 90.5 55 78.2
Ciclev10006402m.g Citrus clementina HOM05D008152 ORTHO05D010231 7.9e-17 89.7 63 73.0
Medtr7g090035 Medicago truncatula HOM05D008152 ORTHO05D010231 7.9e-17 89.7 57 71.9
Nn2g14938 Nelumbo nucifera HOM05D008152 ORTHO05D010231 7.9e-17 89.7 60 73.3
Manes.08G056600 Manihot esculenta HOM05D008152 ORTHO05D010231 1.4e-16 89.0 59 72.9
Potri.006G043300 Populus trichocarpa HOM05D008152 ORTHO05D010231 2.3e-16 88.2 53 73.6
Lalb_Chr14g0365951 Lupinus albus HOM05D008152 ORTHO05D010231 5.1e-16 87.0 57 68.4
Phvul.001G124150 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 5.1e-16 87.0 59 69.5
Phvul.001G124600 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 5.1e-16 87.0 59 69.5
Nn7g36510 Nelumbo nucifera HOM05D008152 ORTHO05D010231 8.8e-16 86.3 57 73.7
Glyma.19G131100 Glycine max HOM05D008152 ORTHO05D010231 2.5e-15 84.7 57 68.4
Migut.K00109 Erythranthe guttata HOM05D008152 ORTHO05D010231 4.3e-15 84.0 58 72.4
PGR031G3912 Punica granatum HOM05D008152 ORTHO05D010231 5.7e-15 83.6 61 67.2
Lj1g0004562 Lotus japonicus HOM05D008152 ORTHO05D010231 1.7e-14 82.0 57 68.4
CAN.G1237.35 Capsicum annuum HOM05D008152 ORTHO05D010231 3.7e-14 80.9 64 59.4
CiPaw.09G044200 Carya illinoinensis HOM05D008152 ORTHO05D010231 6.3e-14 80.1 60 75.0
Nitab4.5_0010323g0030 Nicotiana tabacum HOM05D008152 ORTHO05D010231 6.3e-14 80.1 60 63.3
SalBow6G4146 Salvia bowleyana HOM05D008152 ORTHO05D010231 1.1e-13 79.3 55 70.9
THA.LOC104816407 Tarenaya hassleriana HOM05D008152 ORTHO05D010231 1.2e-12 75.9 57 64.9
Oeu013028.1 Olea europaea HOM05D008152 ORTHO05D010231 1.5e-12 75.5 58 63.8
Solyc10g084060.2 Solanum lycopersicum HOM05D008152 ORTHO05D010231 2.6e-12 74.7 62 59.7
AL6G13710 Arabidopsis lyrata HOM05D008152 ORTHO05D010231 3.4e-12 74.3 61 63.9
Psat3g078320 Pisum sativum HOM05D008152 ORTHO05D010231 3.4e-12 74.3 45 71.1
Eucgr.K01615 Eucalyptus grandis HOM05D008152 ORTHO05D010231 7.7e-12 73.2 64 60.9
C09p72760 Brassica napus HOM05D008152 ORTHO05D010231 1.0e-11 72.8 61 57.4
CARHR209180 Cardamine hirsuta HOM05D008152 ORTHO05D010231 5.0e-11 70.5 64 57.8
Carub.0006s0304 Capsella rubella HOM05D008152 ORTHO05D010231 6.5e-11 70.1 63 60.3
BolC9t60014H Brassica oleracea HOM05D008152 ORTHO05D010231 1.4e-10 68.9 61 55.7
Thhalv10015225m.g Eutrema salsugineum HOM05D008152 ORTHO05D010231 1.4e-10 68.9 58 60.3
A10p32040 Brassica napus HOM05D008152 ORTHO05D010231 1.9e-10 68.6 61 55.7
BcaC06g32113 Brassica carinata HOM05D008152 ORTHO05D010231 2.5e-10 68.2 61 57.4
C03p01870 Brassica napus HOM05D008152 ORTHO05D010231 2.5e-10 68.2 61 57.4
BcaB01g05765 Brassica carinata HOM05D008152 ORTHO05D010231 3.2e-10 67.8 59 57.6
A03p01520 Brassica napus HOM05D008152 ORTHO05D010231 3.2e-10 67.8 63 55.6
BraA03t09529Z Brassica rapa HOM05D008152 ORTHO05D010231 3.2e-10 67.8 63 55.6
BraA10t45248Z Brassica rapa HOM05D008152 ORTHO05D010231 4.2e-10 67.4 58 56.9
BraA02t04797Z Brassica rapa HOM05D008152 ORTHO05D010231 9.4e-10 66.2 59 59.3
Sc13g0001370 Simmondsia chinensis HOM05D008152 ORTHO05D010231 1.6e-09 65.5 60 56.7
BolC2t06131H Brassica oleracea HOM05D008152 ORTHO05D010231 2.1e-09 65.1 63 55.6
Hund19113 Selenicereus undatus HOM05D008152 ORTHO05D010231 2.1e-09 65.1 68 50.0
BcaB01g05882 Brassica carinata HOM05D008152 ORTHO05D010231 2.7e-09 64.7 51 56.9
Sed0008507 Sechium edule HOM05D008152 ORTHO05D010231 1.4e-08 62.4 34 70.6
Manes.11G003500 Manihot esculenta HOM05D008152 ORTHO05D010231 3.9e-08 60.8 55 50.9
Aa31LG1G21240 Aethionema arabicum HOM05D008152 ORTHO05D010231 5.1e-08 60.5 68 48.5
Sed0007854 Sechium edule HOM05D008152 ORTHO05D010231 5.1e-08 60.5 55 54.5
Ciclev10033235m.g Citrus clementina HOM05D008152 ORTHO05D010231 1.1e-07 59.3 29 82.8
BolC3t12740H Brassica oleracea HOM05D008152 ORTHO05D010231 2.6e-07 58.2 55 54.5
ClCG05G020750 Citrullus lanatus HOM05D008152 ORTHO05D010231 4.4e-07 57.4 61 47.5
SEGI_34450 Sequoiadendron giganteum HOM05D037356 ORTHO05D010231 1.3e-06 55.8 27 70.4
arahy.Tifrunner.gnm1.ann1.46R54Y Arachis hypogaea HOM05D008152 ORTHO05D010231 6.3e-06 53.5 44 63.6


User provided reference genes

Program Settings