Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 5.3e-148 527.7 277 100.0
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 3.7e-133 478.4 275 89.8
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 4.5e-131 471.5 275 87.6
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.3e-130 469.9 275 87.6
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.3e-130 469.9 275 87.6
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 8.6e-130 467.2 275 87.3
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 8.6e-130 467.2 275 87.6
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.9e-129 466.1 275 87.3
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.5e-126 456.4 275 83.6
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.5e-126 456.4 286 83.9
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 2.6e-126 455.7 275 84.0
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 4.9e-125 451.4 275 82.2
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 1.8e-124 449.5 275 81.8
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 1.0e-122 443.7 275 82.5
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 1.7e-122 443.0 273 82.4
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 4.3e-121 438.3 276 83.0
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 1.2e-120 436.8 275 81.1
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 3.6e-120 435.3 274 81.8
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 6.2e-120 434.5 276 81.5
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 8.0e-120 434.1 272 80.5
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 8.0e-120 434.1 273 79.9
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 3.1e-119 432.2 276 81.5
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 6.8e-119 431.0 276 81.2
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.2e-118 430.3 272 79.4
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.5e-118 429.9 276 80.1
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 2.0e-118 429.5 270 80.0
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 2.0e-118 429.5 274 80.7
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 2.0e-118 429.5 274 80.7
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 3.4e-118 428.7 273 79.1
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 3.4e-118 428.7 274 79.9
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 5.8e-118 427.9 271 80.4
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 1.3e-117 426.8 273 81.0
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 2.9e-117 425.6 273 79.1
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 3.7e-117 425.2 274 79.9
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 4.9e-117 424.9 275 79.6
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 1.4e-116 423.3 274 79.6
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.4e-116 423.3 275 79.3
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 1.9e-116 422.9 268 79.9
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 1.9e-116 422.9 274 78.8
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 2.4e-116 422.5 271 80.1
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 2.4e-116 422.5 273 80.2
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 3.2e-116 422.2 274 78.1
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 4.1e-116 421.8 276 79.0
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 5.4e-116 421.4 274 77.7
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 7.0e-116 421.0 273 80.2
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 1.2e-115 420.2 271 79.0
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.2e-115 420.2 274 77.7
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 2.0e-115 419.5 274 77.4
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 3.5e-115 418.7 272 77.6
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 3.5e-115 418.7 271 77.9
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 4.6e-115 418.3 272 77.9
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 7.8e-115 417.5 273 77.3
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 1.0e-114 417.2 273 78.8
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.3e-114 416.8 272 77.2
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 1.3e-114 416.8 271 78.6
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.7e-114 416.4 274 77.7
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 2.3e-114 416.0 274 76.3
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 2.3e-114 416.0 276 77.5
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 2.3e-114 416.0 271 77.1
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 2.3e-114 416.0 271 77.1
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 2.3e-114 416.0 269 77.7
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 3.0e-114 415.6 272 78.3
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 3.9e-114 415.2 276 77.2
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 3.9e-114 415.2 270 78.9
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 5.0e-114 414.8 273 77.3
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 8.6e-114 414.1 276 77.5
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 1.5e-113 413.3 275 76.7
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 1.9e-113 412.9 291 73.9
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 3.3e-113 412.1 275 76.0
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 5.6e-113 411.4 276 76.8
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 5.6e-113 411.4 279 76.0
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 7.3e-113 411.0 304 72.7
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 7.3e-113 411.0 276 76.8
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 7.3e-113 411.0 276 76.4
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 9.5e-113 410.6 275 76.0
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 9.5e-113 410.6 276 76.4
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.2e-112 410.2 276 77.2
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 1.2e-112 410.2 271 77.5
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 1.6e-112 409.8 276 76.4
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 2.1e-112 409.5 276 76.1
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 2.8e-112 409.1 276 76.4
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 3.6e-112 408.7 276 76.1
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 6.2e-112 407.9 276 76.4
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 6.2e-112 407.9 273 77.7
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.4e-111 406.8 278 75.2
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 1.8e-111 406.4 276 75.7
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 3.1e-111 405.6 273 77.7
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 1.5e-110 403.3 282 73.4
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 3.4e-110 402.1 272 74.6
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.3e-109 400.2 275 73.1
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-109 399.4 276 75.0
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-109 399.4 276 75.0
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-109 399.4 276 75.0
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 2.9e-109 399.1 275 73.1
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 1.9e-108 396.4 276 73.9
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 7.1e-108 394.4 275 72.0
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 3.5e-107 392.1 275 74.2
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 1.7e-106 389.8 280 72.9
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.9e-105 386.3 318 66.0
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 3.6e-104 382.1 288 68.4
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 4.7e-104 381.7 334 62.9
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 3.1e-103 379.0 367 58.3
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 9.9e-102 374.0 268 71.3
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 9.9e-102 374.0 273 71.1
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 4.9e-101 371.7 268 70.5
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 4.9e-101 371.7 321 63.9
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 4.9e-101 371.7 265 71.7
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.4e-100 368.2 262 72.1
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 3.9e-98 362.1 253 76.3
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 2.5e-97 359.4 265 68.3
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 1.6e-96 356.7 268 67.9
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 8.1e-96 354.4 272 67.3
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 8.1e-96 354.4 253 70.0
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 2.1e-91 339.7 264 65.9
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 4.6e-91 338.6 270 61.9
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 6.6e-90 334.7 274 60.9
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 7.3e-89 331.3 486 44.2
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.1e-88 329.7 486 44.0
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 9.9e-86 320.9 213 78.9
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 9.9e-86 320.9 271 63.1
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 9.3e-84 314.3 255 65.1
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.5e-81 306.2 263 58.9
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 7.4e-81 304.7 263 58.6
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 7.4e-81 304.7 255 64.7
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 2.1e-80 303.1 265 59.2
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 3.6e-80 302.4 298 61.1
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 1.1e-79 300.8 263 58.6
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-79 300.4 258 64.3
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-79 300.4 282 58.5
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 1.8e-79 300.1 259 64.5
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 2.4e-79 299.7 282 58.9
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 9.9e-78 294.3 262 58.0
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 3.8e-77 292.4 282 58.2
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.9e-76 290.0 282 58.2
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.9e-76 290.0 282 58.5
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 3.0e-74 282.7 278 54.7
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 2.1e-72 276.6 259 62.5
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 3.8e-69 265.8 163 81.6
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-68 263.8 226 64.2
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 1.4e-68 263.8 275 50.5
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 4.6e-67 258.8 281 55.2
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 6.0e-67 258.5 256 57.4
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 5.9e-62 241.9 265 50.9
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 2.9e-61 239.6 146 83.6
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.3e-58 229.9 271 50.2
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 6.3e-56 221.9 251 50.6
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 3.2e-52 209.5 131 81.7
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 5.5e-52 208.8 267 48.7
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.3e-45 187.6 163 67.5
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.9e-44 183.7 131 73.3
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 7.2e-44 181.8 135 71.1
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.1e-41 174.5 138 64.5
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.0e-41 173.7 147 62.6
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 7.4e-41 171.8 415 33.7
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 3.1e-39 166.4 219 47.0
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 5.9e-38 162.2 96 84.4
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 7.2e-36 155.2 123 64.2
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.7e-35 153.3 101 77.2
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 4.4e-33 146.0 140 60.7
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 4.5e-30 136.0 124 56.5
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 8.5e-29 131.7 257 34.2
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 1.4e-26 124.4 67 89.6
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 2.6e-25 120.2 291 28.9
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 7.5e-25 118.6 72 87.5
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 1.7e-24 117.5 262 30.2
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.7e-21 107.5 150 47.3
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 1.6e-19 100.9 111 52.3
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 3.6e-19 99.8 82 58.5
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.3e-16 91.3 68 64.7
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.3e-16 91.3 68 64.7
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 1.7e-16 90.9 53 84.9
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-16 90.5 51 90.2
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 2.8e-16 90.1 51 88.2
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 2.8e-16 90.1 51 88.2
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 2.8e-16 90.1 69 63.8
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.7e-16 89.7 59 74.6
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 6.3e-16 89.0 51 88.2
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-15 87.8 51 88.2
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.4e-15 87.8 68 61.8
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.1e-15 86.7 68 61.8
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 3.1e-15 86.7 70 64.3
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-14 84.7 49 85.7
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 2.3e-10 70.5 66 51.5
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 3.2e-07 60.1 40 75.0
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.0e-06 57.4 48 58.3
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 2.7e-06 57.0 57 49.1


User provided reference genes

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