Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 1.1e-176 623.2 328 100.0
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 4.9e-124 448.4 272 82.0
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 1.7e-116 423.3 308 71.4
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 2.2e-116 422.9 323 69.7
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 1.6e-111 406.8 317 67.5
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 4.4e-109 398.7 273 72.9
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 6.4e-108 394.8 279 72.0
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.1e-106 389.8 317 65.6
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 5.1e-105 385.2 323 62.5
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 1.5e-104 383.6 314 65.3
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 7.3e-104 381.3 275 68.7
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 3.1e-102 375.9 312 64.1
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 4.0e-102 375.6 277 67.5
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 5.2e-102 375.2 277 67.5
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.5e-101 373.6 314 64.6
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 4.4e-101 372.1 318 61.0
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 9.9e-101 370.9 273 67.4
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 1.1e-99 367.5 280 66.1
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.4e-99 367.1 318 63.5
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 1.9e-99 366.7 319 61.8
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 2.4e-99 366.3 254 71.7
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 3.5e-98 362.5 300 65.0
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 4.6e-98 362.1 304 63.8
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 3.3e-96 355.9 279 63.8
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 5.3e-94 348.6 320 59.1
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.5e-93 347.1 279 65.9
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 2.6e-93 346.3 312 59.0
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 1.3e-92 344.0 316 60.8
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 2.9e-92 342.8 273 65.9
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 3.8e-92 342.4 277 62.8
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 4.9e-92 342.0 284 62.7
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 8.4e-92 341.3 197 87.8
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 1.1e-91 340.9 315 59.0
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 2.3e-89 333.2 280 62.5
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 5.1e-89 332.0 282 62.8
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 1.1e-88 330.9 312 57.7
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 1.9e-88 330.1 308 57.1
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 4.3e-88 328.9 280 60.4
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 4.3e-88 328.9 313 58.1
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 7.4e-88 328.2 275 62.2
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 7.4e-88 328.2 273 62.3
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 4.8e-87 325.5 282 62.1
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 1.4e-86 323.9 318 56.3
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 2.4e-86 323.2 269 61.7
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 4.0e-86 322.4 281 59.8
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 1.2e-85 320.9 268 62.7
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 9.9e-85 317.8 260 62.3
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 1.3e-84 317.4 272 61.8
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 3.8e-84 315.8 272 61.4
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 3.8e-84 315.8 270 61.5
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 4.9e-84 315.5 223 70.4
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 8.4e-84 314.7 266 59.4
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 1.1e-83 314.3 269 61.0
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 1.4e-83 313.9 350 53.4
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 2.1e-82 310.1 278 57.9
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 3.5e-82 309.3 268 59.3
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 4.6e-82 308.9 321 55.5
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 7.9e-82 308.1 304 56.2
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 1.0e-81 307.8 271 60.1
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 2.3e-81 306.6 267 58.1
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 5.1e-81 305.4 268 59.0
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.1e-80 304.3 267 59.2
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 3.3e-80 302.8 296 53.4
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 4.3e-80 302.4 313 53.4
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 5.6e-80 302.0 268 59.0
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 2.1e-79 300.1 320 54.1
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 3.7e-79 299.3 267 56.9
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 3.7e-79 299.3 267 56.9
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 6.2e-79 298.5 331 52.3
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 6.2e-79 298.5 274 57.3
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.1e-78 296.2 272 56.6
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 6.9e-78 295.0 303 54.8
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 1.5e-77 293.9 312 53.2
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 4.5e-77 292.4 239 63.2
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 8.4e-76 288.1 281 53.0
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 1.9e-75 287.0 270 54.1
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 9.3e-75 284.6 282 56.4
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 9.3e-75 284.6 272 56.2
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 3.5e-74 282.7 313 50.2
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 3.9e-73 279.3 294 53.4
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.5e-72 277.3 278 52.9
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.5e-72 277.3 305 51.1
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 2.5e-72 276.6 260 57.7
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 9.6e-72 274.6 292 53.1
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 1.6e-71 273.9 281 54.4
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 2.8e-71 273.1 281 54.1
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 4.8e-71 272.3 251 55.0
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 5.5e-67 258.8 252 53.2
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 7.2e-67 258.5 309 47.2
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 7.9e-66 255.0 297 49.8
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 6.7e-65 251.9 257 50.2
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 6.7e-65 251.9 284 50.4
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 6.7e-65 251.9 274 49.6
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 1.1e-64 251.1 222 58.6
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 3.7e-63 246.1 311 46.3
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 1.0e-60 238.0 251 49.4
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 2.1e-58 230.3 275 48.7
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 3.6e-58 229.6 278 47.8
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 1.4e-57 227.6 277 45.8
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 1.5e-56 224.2 305 45.2
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 4.4e-56 222.6 278 43.9
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 9.1e-54 214.9 256 46.5
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 3.4e-53 213.0 135 74.1
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 5.5e-51 205.7 240 47.9
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 2.3e-49 200.3 176 60.2
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 7.7e-45 185.3 174 54.6
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 5.5e-43 179.1 226 46.0
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 1.2e-42 177.9 184 55.4
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 1.2e-34 151.4 275 37.5
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 8.3e-31 138.7 205 42.4
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 9.1e-30 135.2 262 32.4
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 2.9e-28 130.2 145 46.2
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-26 124.8 193 39.9
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.6e-26 123.2 119 55.5
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.7e-23 113.2 132 51.5
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 5.4e-22 109.4 83 65.1
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.0e-21 107.5 177 38.4
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.0e-21 107.5 177 38.4
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 3.8e-20 103.2 176 38.6
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 5.0e-20 102.8 221 34.4
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 5.0e-20 102.8 212 35.8
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 8.6e-20 102.1 94 57.4
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 9.5e-19 98.6 217 34.1
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 1.4e-17 94.7 128 38.3
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 4.0e-17 93.2 129 45.7
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 3.2e-14 83.6 163 33.7
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 5.4e-14 82.8 178 34.3
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.2e-13 81.6 61 65.6
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.6e-13 81.3 77 51.9
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.9e-13 79.3 151 39.1
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 5.0e-12 76.3 65 53.8
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 5.0e-12 76.3 62 62.9
VMungo0720G0209 Vigna mungo HOM05D005448 ORTHO05D006405 1.5e-11 74.7 91 44.0
VMungo1127G0437 Vigna mungo HOM05D005448 ORTHO05D006405 1.9e-11 74.3 158 34.2
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 9.5e-11 72.0 63 58.7
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 1.2e-10 71.6 52 75.0
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-10 71.6 63 58.7
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 1.6e-10 71.2 78 50.0
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 1.6e-10 71.2 78 50.0
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 1.0e-09 68.6 175 33.1
VMungo1309G2642 Vigna mungo HOM05D005448 ORTHO05D006405 4.0e-09 66.6 81 46.9
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.0e-08 64.3 134 36.6


User provided reference genes

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