Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G038600 Prunus persica HOM05D007488 ORTHO05D009461 2.9e-102 375.2 184 100.0
MD14G1087900 Malus domestica HOM05D007488 ORTHO05D009461 3.1e-59 232.3 184 66.3
Cfa003623 Carpinus fangiana HOM05D007488 ORTHO05D009461 6.9e-51 204.5 184 58.2
Rhsim03G0039700 Rhododendron simsii HOM05D007488 ORTHO05D009461 3.4e-50 202.2 184 55.4
Haze_15889 Corylus avellana HOM05D007488 ORTHO05D009461 1.2e-47 193.7 185 55.7
Ciclev10006109m.g Citrus clementina HOM05D007488 ORTHO05D009461 1.3e-46 190.3 184 50.5
FvH4_6g45840 Fragaria vesca HOM05D007488 ORTHO05D009461 1.1e-45 187.2 189 55.0
FAN05G4359 Fragaria x ananassa HOM05D007488 ORTHO05D009461 1.5e-45 186.8 187 54.0
FAN02G3897 Fragaria x ananassa HOM05D007488 ORTHO05D009461 1.3e-44 183.7 188 53.7
Manes.09G005400 Manihot esculenta HOM05D007488 ORTHO05D009461 2.8e-44 182.6 184 50.0
Actinidia01825 Actinidia chinensis HOM05D007488 ORTHO05D009461 3.7e-44 182.2 184 52.7
PGR142G4416 Punica granatum HOM05D007488 ORTHO05D009461 6.2e-44 181.4 185 54.1
Cc06_g19180 Coffea canephora HOM05D007488 ORTHO05D009461 4.0e-43 178.7 184 54.9
QL07p010346 Quercus lobata HOM05D007488 ORTHO05D009461 9.0e-43 177.6 183 50.3
Ca_08393_v3 Cicer arietinum L. HOM05D007488 ORTHO05D009461 5.8e-42 174.9 184 52.2
Nn4g25823 Nelumbo nucifera HOM05D007488 ORTHO05D009461 5.8e-42 174.9 186 50.5
Dinv09710 Davidia involucrata HOM05D007488 ORTHO05D009461 1.0e-41 174.1 184 51.6
TPR.G30624 Trifolium pratense HOM05D007488 ORTHO05D009461 6.5e-41 171.4 184 51.6
Psat3g078680 Pisum sativum HOM05D007488 ORTHO05D009461 1.4e-40 170.2 184 49.5
Aqoxy2G00394 Aquilegia oxysepala HOM05D007488 ORTHO05D009461 1.9e-40 169.9 194 47.9
Cpa.g.sc5.171 Carica papaya HOM05D007488 ORTHO05D009461 3.2e-40 169.1 185 47.6
Migut.K00133 Erythranthe guttata HOM05D007488 ORTHO05D009461 7.1e-40 167.9 184 51.1
Medtr7g089940 Medicago truncatula HOM05D007488 ORTHO05D009461 7.1e-40 167.9 184 50.0
Lalb_Chr22g0357421 Lupinus albus HOM05D007488 ORTHO05D009461 9.3e-40 167.5 185 51.9
Eucgr.A02247 Eucalyptus grandis HOM05D007488 ORTHO05D009461 3.5e-39 165.6 194 51.0
THA.LOC104803261 Tarenaya hassleriana HOM05D007488 ORTHO05D009461 6.0e-39 164.9 187 46.5
EL10Ac3g07236 Beta vulgaris HOM05D007488 ORTHO05D009461 8.7e-38 161.0 184 48.9
CiPaw.09G047600 Carya illinoinensis HOM05D007488 ORTHO05D009461 1.1e-37 160.6 185 48.1
MSTRG.19810 Avicennia marina HOM05D007488 ORTHO05D009461 1.5e-37 160.2 184 50.0
CANSAT64G0776 Cannabis sativa HOM05D007488 ORTHO05D009461 3.3e-37 159.1 185 46.5
Lsat_1_v5_gn_5_157940 Lactuca sativa HOM05D007488 ORTHO05D009461 3.3e-37 159.1 184 45.7
Lj1g0022068 Lotus japonicus HOM05D007488 ORTHO05D009461 5.7e-37 158.3 184 46.2
Hund19096 Selenicereus undatus HOM05D007488 ORTHO05D009461 7.4e-37 157.9 186 47.8
CAN.G317.6 Capsicum annuum HOM05D007488 ORTHO05D009461 1.6e-36 156.8 184 47.8
CARHR136300 Cardamine hirsuta HOM05D007488 ORTHO05D009461 1.4e-35 153.7 186 44.6
DCAR_016880 Daucus carota HOM05D007488 ORTHO05D009461 1.8e-35 153.3 184 46.2
TWI74G0203 Tripterygium wilfordii HOM05D007488 ORTHO05D009461 1.8e-35 153.3 172 46.5
AL4G39170 Arabidopsis lyrata HOM05D007488 ORTHO05D009461 5.3e-35 151.8 186 44.1
AT2G41200 Arabidopsis thaliana HOM05D007488 ORTHO05D009461 6.9e-35 151.4 186 43.5
TAR369G0408 Trochodendron aralioides HOM05D007488 ORTHO05D009461 9.0e-35 151.0 199 48.2
Sp4g23500 Schrenkiella parvula HOM05D007488 ORTHO05D009461 1.2e-34 150.6 186 43.5
Peaxi162Scf00076g00524 Petunia axillaris HOM05D007488 ORTHO05D009461 1.5e-34 150.2 171 45.6
Sc18g0003830 Simmondsia chinensis HOM05D007488 ORTHO05D009461 1.5e-34 150.2 166 49.4
BcaB01g03485 Brassica carinata HOM05D007488 ORTHO05D009461 3.4e-34 149.1 186 43.0
Phvul.001G123700 Phaseolus vulgaris HOM05D007488 ORTHO05D009461 4.5e-34 148.7 186 44.1
Atru.chr1.1442 Acer truncatum HOM05D007488 ORTHO05D009461 7.6e-34 147.9 186 45.2
AUR62030320 Chenopodium quinoa HOM05D007488 ORTHO05D009461 1.0e-33 147.5 191 44.5
SalBow1G5076 Salvia bowleyana HOM05D007488 ORTHO05D009461 1.3e-33 147.1 184 44.0
SalBow1G6194 Salvia bowleyana HOM05D007488 ORTHO05D009461 1.3e-33 147.1 184 44.0
AUR62018346 Chenopodium quinoa HOM05D007488 ORTHO05D009461 2.2e-33 146.4 189 45.5
HanXRQChr03g0061531 Helianthus annuus HOM05D007488 ORTHO05D009461 2.2e-33 146.4 184 44.6
Nitab4.5_0001937g0020 Nicotiana tabacum HOM05D007488 ORTHO05D009461 2.9e-33 146.0 184 47.3
ECA248G2641 Erigeron canadensis HOM05D007488 ORTHO05D009461 3.8e-33 145.6 184 44.0
Glyma.19G130600 Glycine max HOM05D007488 ORTHO05D009461 6.5e-33 144.8 184 44.0
Thhalv10017345m.g Eutrema salsugineum HOM05D007488 ORTHO05D009461 8.4e-33 144.4 186 41.9
VMungo1383G0792 Vigna mungo HOM05D007488 ORTHO05D009461 1.4e-32 143.7 184 42.4
Glyma.03G128000 Glycine max HOM05D007488 ORTHO05D009461 1.9e-32 143.3 184 42.9
Sopen03g012080 Solanum pennellii HOM05D007488 ORTHO05D009461 1.9e-32 143.3 184 44.0
Nitab4.5_0000424g0040 Nicotiana tabacum HOM05D007488 ORTHO05D009461 2.5e-32 142.9 184 45.1
A03p23120 Brassica napus HOM05D007488 ORTHO05D009461 3.2e-32 142.5 186 40.9
BraA03t11533Z Brassica rapa HOM05D007488 ORTHO05D009461 3.2e-32 142.5 186 40.9
PSO339G1058 Papaver somniferum HOM05D007488 ORTHO05D009461 3.2e-32 142.5 186 43.5
SGA_v2.0_scaffold94G28540 Striga asiatica HOM05D007488 ORTHO05D009461 3.2e-32 142.5 174 45.4
BcaC01g05355 Brassica carinata HOM05D007488 ORTHO05D009461 5.5e-32 141.7 186 40.3
C03p27550 Brassica napus HOM05D007488 ORTHO05D009461 5.5e-32 141.7 186 40.3
BolC3t15128H Brassica oleracea HOM05D007488 ORTHO05D009461 5.5e-32 141.7 186 40.3
FAN09G2471 Fragaria x ananassa HOM05D007488 ORTHO05D009461 5.5e-32 141.7 157 49.7
arahy.Tifrunner.gnm1.ann1.8RZU3Q Arachis hypogaea HOM05D007488 ORTHO05D009461 1.6e-31 140.2 188 42.6
arahy.Tifrunner.gnm1.ann1.Z4B7ZU Arachis hypogaea HOM05D007488 ORTHO05D009461 2.7e-31 139.4 188 43.6
Carub.0004s2351 Capsella rubella HOM05D007488 ORTHO05D009461 4.6e-31 138.7 164 42.7
FAN14G1565 Fragaria x ananassa HOM05D007488 ORTHO05D009461 7.9e-31 137.9 299 34.1
Nitab4.5_0000812g0120 Nicotiana tabacum HOM05D007488 ORTHO05D009461 3.9e-30 135.6 184 42.4
RcHm_v2.0_Chr2g0164041 Rosa chinensis HOM05D007488 ORTHO05D009461 3.9e-30 135.6 187 46.0
Potri.006G038600 Populus trichocarpa HOM05D007488 ORTHO05D009461 7.4e-29 131.3 239 36.0
Duzib106G1788 Durio zibethinus HOM05D007488 ORTHO05D009461 2.2e-28 129.8 169 44.4
Nitab4.5_0006279g0050 Nicotiana tabacum HOM05D007488 ORTHO05D009461 2.8e-28 129.4 184 40.8
Thecc.05G135000 Theobroma cacao HOM05D007488 ORTHO05D009461 2.4e-27 126.3 171 43.3
Gohir.A11G307200 Gossypium hirsutum HOM05D007488 ORTHO05D009461 9.0e-27 124.4 169 43.2
Gohir.D11G322700 Gossypium hirsutum HOM05D007488 ORTHO05D009461 1.2e-26 124.0 169 42.6
Gorai.007G352800 Gossypium raimondii HOM05D007488 ORTHO05D009461 3.4e-26 122.5 169 42.0
Aa31LG3G800 Aethionema arabicum HOM05D007488 ORTHO05D009461 1.7e-25 120.2 87 62.1
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 6.5e-25 118.2 132 47.7
Lj1P1093T64 Lonicera japonica HOM05D007488 ORTHO05D009461 3.2e-24 115.9 83 65.1
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 4.2e-24 115.5 130 48.5
BcaC02g12760 Brassica carinata HOM05D007488 ORTHO05D009461 5.7e-21 105.1 185 34.6
C04p02520 Brassica napus HOM05D007488 ORTHO05D009461 3.7e-20 102.4 79 58.2
BolC4t21895H Brassica oleracea HOM05D007488 ORTHO05D009461 3.7e-20 102.4 79 58.2
Peaxi162Scf00701g00057 Petunia axillaris HOM05D007488 ORTHO05D009461 1.1e-19 100.9 80 56.2
Sopen10g029120 Solanum pennellii HOM05D000484 ORTHO05D000346 2.6e-18 96.3 151 36.4
PSO384G4473 Papaver somniferum HOM05D007488 ORTHO05D009461 2.2e-17 93.2 83 53.0
CDE09G0800 Ceratophyllum demersum HOM05D007488 ORTHO05D009461 5.0e-17 92.0 190 33.7
GSVIVG01033626001 Vitis vinifera HOM05D007488 ORTHO05D009461 1.1e-16 90.9 185 31.9
Solyc03g058440.1 Solanum lycopersicum HOM05D007488 ORTHO05D009461 3.7e-12 75.9 64 57.8
A05p02110 Brassica napus HOM05D007488 ORTHO05D009461 5.3e-11 72.0 83 44.6
BraA05t19207Z Brassica rapa HOM05D007488 ORTHO05D009461 5.3e-11 72.0 83 44.6
MBI18_g37945_MAGBIO Magnolia biondii HOM05D007488 ORTHO05D009461 3.5e-10 69.3 200 30.5
Os01g0955600 Oryza sativa ssp. japonica HOM05D007488 ORTHO05D009461 4.7e-07 58.9 137 32.1
CSS0011704 Camellia sinensis var. sinensis HOM05D007488 ORTHO05D009461 6.1e-07 58.5 78 43.6
MBI13_g11934_MAGBIO Magnolia biondii HOM05D007488 ORTHO05D009461 1.8e-06 57.0 71 43.7


User provided reference genes

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