Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 4.2e-159 564.7 293 100.0
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 1.9e-148 529.3 293 91.8
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 7.6e-145 517.3 293 91.5
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 1.6e-142 509.6 293 90.1
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 8.2e-139 497.3 293 87.7
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 2.6e-137 492.3 293 86.3
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 1.4e-135 486.5 293 86.3
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 4.6e-134 481.5 319 80.6
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 6.7e-133 477.6 293 84.6
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 2.2e-131 472.6 293 82.6
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 1.8e-130 469.5 293 82.3
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 2.6e-129 465.7 293 81.2
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 1.3e-128 463.4 293 81.9
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 3.8e-128 461.8 293 80.9
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 3.8e-128 461.8 294 79.9
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 6.5e-128 461.1 294 80.6
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 1.4e-127 459.9 293 79.9
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 1.4e-127 459.9 294 79.9
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 3.2e-127 458.8 294 79.6
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 3.2e-127 458.8 294 79.6
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 7.2e-127 457.6 326 75.5
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 2.7e-126 455.7 293 80.5
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 7.9e-126 454.1 294 78.6
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 1.4e-125 453.4 294 80.3
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 6.7e-125 451.1 295 78.6
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 8.8e-125 450.7 294 78.6
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 1.1e-124 450.3 293 78.2
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 1.1e-124 450.3 293 78.5
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 2.0e-124 449.5 294 78.6
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 7.4e-124 447.6 295 78.0
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 7.4e-124 447.6 295 78.0
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 9.7e-124 447.2 294 79.6
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 9.7e-124 447.2 295 78.3
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 9.7e-124 447.2 293 77.8
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 2.8e-123 445.7 294 76.9
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 2.8e-123 445.7 293 76.8
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 6.3e-123 444.5 294 78.2
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 6.3e-123 444.5 294 77.6
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.1e-122 443.7 292 78.4
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 1.4e-122 443.4 293 77.1
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.4e-122 443.4 293 77.8
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 2.4e-122 442.6 294 77.2
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 2.4e-122 442.6 294 77.6
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 3.1e-122 442.2 296 78.4
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 7.0e-122 441.0 293 77.5
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 4.5e-121 438.3 290 77.2
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 1.0e-120 437.2 291 78.7
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 1.0e-120 437.2 297 77.8
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 2.9e-120 435.6 294 77.6
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.9e-119 433.0 296 77.7
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.5e-119 432.6 291 77.3
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 4.2e-119 431.8 306 74.8
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 4.2e-119 431.8 306 74.8
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.6e-118 429.9 296 76.7
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 2.7e-118 429.1 323 70.0
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 1.0e-117 427.2 295 75.9
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.0e-117 427.2 294 75.5
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 1.4e-117 426.8 306 74.5
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.4e-117 426.8 292 76.7
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 4.4e-116 421.8 294 74.1
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 1.7e-115 419.9 294 72.8
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.7e-115 419.9 293 75.1
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 1.1e-114 417.2 295 72.5
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 3.1e-114 415.6 285 78.2
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 2.6e-113 412.5 294 73.8
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 4.5e-113 411.8 295 72.2
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.0e-112 410.6 297 73.7
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 5.0e-112 408.3 305 72.5
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 6.5e-112 407.9 294 70.7
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 2.5e-111 406.0 294 72.4
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 5.5e-111 404.8 237 86.9
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 9.4e-111 404.1 291 70.8
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 3.6e-110 402.1 317 67.8
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.3e-109 399.4 295 68.5
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 3.0e-109 399.1 294 70.7
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 8.8e-109 397.5 294 72.1
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 1.5e-108 396.7 291 71.1
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 2.0e-108 396.4 295 67.8
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 4.4e-108 395.2 293 71.3
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.3e-107 393.7 294 71.4
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.7e-107 393.3 294 70.7
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 2.8e-107 392.5 294 68.4
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 2.8e-107 392.5 295 67.1
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 4.8e-107 391.7 294 71.1
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.1e-106 390.6 321 65.7
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 1.8e-106 389.8 352 59.7
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 4.1e-106 388.7 298 66.1
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 5.3e-106 388.3 293 70.3
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 9.1e-106 387.5 272 72.8
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 1.2e-105 387.1 293 67.2
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.6e-105 386.7 296 69.3
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 2.0e-105 386.3 293 70.0
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 2.0e-105 386.3 276 73.6
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 4.5e-105 385.2 285 71.9
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 5.9e-105 384.8 296 67.9
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 8.5e-104 380.9 297 68.7
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 8.5e-104 380.9 295 65.8
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.1e-103 380.6 293 68.6
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.2e-102 377.1 297 67.7
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 8.0e-102 374.4 293 68.3
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 1.5e-100 370.2 237 78.1
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 2.0e-100 369.8 338 61.2
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 4.4e-100 368.6 292 67.8
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 3.7e-99 365.5 310 64.2
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 3.7e-99 365.5 287 68.3
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 1.4e-98 363.6 288 68.4
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 2.4e-98 362.8 294 64.6
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 7.0e-98 361.3 238 74.4
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 9.1e-98 360.9 294 64.3
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 2.9e-96 355.9 296 63.2
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 2.5e-95 352.8 294 64.6
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 3.6e-94 349.0 295 66.1
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 3.0e-93 345.9 301 63.1
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 9.8e-92 340.9 286 64.0
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 2.8e-91 339.3 308 63.6
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 5.4e-90 335.1 294 65.6
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 2.0e-89 333.2 239 69.9
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 8.6e-88 327.8 294 61.2
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 3.6e-86 322.4 205 81.0
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 1.0e-85 320.9 196 82.1
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 9.8e-84 314.3 294 59.5
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 3.2e-82 309.3 293 59.0
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 6.6e-80 301.6 275 64.0
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 8.6e-80 301.2 307 53.4
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 5.6e-79 298.5 205 75.1
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 4.7e-78 295.4 293 54.6
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.1e-77 294.3 251 62.5
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 3.7e-75 285.8 304 54.3
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 3.7e-75 285.8 249 60.6
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 2.1e-73 280.0 295 54.9
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 6.0e-73 278.5 217 71.0
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.3e-72 277.3 205 69.8
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 9.5e-71 271.2 368 45.9
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.2e-70 270.8 274 54.7
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 1.1e-69 267.7 207 67.1
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 3.1e-69 266.2 288 54.2
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 5.4e-66 255.4 222 58.6
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 3.9e-64 249.2 327 48.3
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 3.1e-61 239.6 289 49.1
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.2e-60 237.7 216 59.3
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 3.2e-58 229.6 318 43.1
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 9.6e-55 218.0 179 66.5
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 1.3e-51 207.6 333 40.5
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 1.9e-47 193.7 159 66.0
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 9.6e-39 164.9 253 39.5
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 2.5e-34 150.2 107 72.9
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 1.1e-31 141.4 90 77.8
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 8.4e-27 125.2 307 32.2
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 1.6e-25 120.9 76 69.7
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 5.7e-23 112.5 100 66.0
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 2.8e-22 110.2 81 72.8
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 3.7e-22 109.8 228 40.8
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 7.7e-20 102.1 266 35.3
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 4.2e-18 96.3 327 29.4
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 7.2e-18 95.5 60 76.7
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 6.1e-17 92.4 68 75.0
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.0e-16 91.7 142 43.0
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 3.7e-06 56.6 41 63.4


User provided reference genes

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