Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 2.1e-140 502.3 244 100.0
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 4.3e-117 424.9 236 86.0
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.9e-112 409.5 236 82.6
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.4e-112 409.1 236 82.6
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 4.2e-112 408.3 236 82.6
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 4.6e-111 404.8 236 82.2
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 4.6e-111 404.8 236 82.2
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.9e-110 401.7 236 80.9
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 1.7e-105 386.3 236 78.0
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 1.2e-103 380.2 236 76.3
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 6.7e-102 374.4 238 76.5
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 1.1e-101 373.6 228 78.5
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 5.6e-101 371.3 236 76.7
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 9.6e-101 370.5 236 75.4
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 1.3e-100 370.2 223 77.1
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 1.3e-100 370.2 232 75.9
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 1.6e-100 369.8 236 75.0
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 1.6e-100 369.8 236 75.8
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 6.2e-100 367.9 238 75.2
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 9.0e-99 364.0 238 74.8
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 9.0e-99 364.0 236 74.2
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 9.9e-98 360.5 236 75.8
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 2.2e-97 359.4 231 75.3
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 2.9e-97 359.0 223 77.6
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 2.9e-97 359.0 223 77.6
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 3.8e-97 358.6 223 77.6
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 3.8e-97 358.6 223 77.6
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 4.9e-97 358.2 228 73.7
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 8.4e-97 357.5 223 77.1
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 1.4e-96 356.7 236 72.0
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 1.9e-96 356.3 235 72.3
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 3.2e-96 355.5 236 74.2
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 4.2e-96 355.1 223 76.7
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 4.2e-96 355.1 223 77.1
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 4.2e-96 355.1 236 72.5
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 5.5e-96 354.8 223 75.8
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 5.5e-96 354.8 236 71.2
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 9.3e-96 354.0 223 76.7
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 1.2e-95 353.6 223 77.1
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 1.2e-95 353.6 223 75.3
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 1.2e-95 353.6 236 72.0
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 2.7e-95 352.4 216 78.2
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 2.7e-95 352.4 216 78.2
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 3.5e-95 352.1 223 76.2
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 6.0e-95 351.3 236 69.1
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 7.9e-95 350.9 252 68.7
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.3e-94 350.1 223 74.9
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 1.3e-94 350.1 236 73.3
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 2.3e-94 349.4 223 74.4
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 2.3e-94 349.4 223 75.3
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 2.3e-94 349.4 232 72.4
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 3.0e-94 349.0 232 71.6
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 3.9e-94 348.6 236 70.3
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 6.7e-94 347.8 232 70.3
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 8.7e-94 347.4 230 70.4
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.5e-93 346.7 269 64.7
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 5.6e-93 344.7 223 74.4
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 7.4e-93 344.4 256 66.8
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 9.6e-93 344.0 223 72.6
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 9.6e-93 344.0 231 70.6
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 1.3e-92 343.6 237 68.8
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 1.6e-92 343.2 236 69.1
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 2.8e-92 342.4 236 68.6
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 6.2e-92 341.3 236 67.4
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 1.4e-91 340.1 223 70.0
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 1.4e-91 340.1 236 67.4
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 1.4e-91 340.1 231 70.6
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 1.8e-91 339.7 227 70.0
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 2.4e-91 339.3 232 69.0
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 4.0e-91 338.6 230 70.4
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 6.9e-91 337.8 230 69.1
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 2.0e-90 336.3 228 70.2
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.4e-90 335.5 213 74.2
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 2.2e-89 332.8 223 69.5
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 6.5e-89 331.3 226 69.0
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 8.4e-89 330.9 236 67.8
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 1.4e-88 330.1 236 65.7
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 2.1e-87 326.2 285 59.3
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 3.9e-86 322.0 193 78.8
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 8.7e-86 320.9 231 64.9
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 3.3e-85 318.9 258 64.7
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 4.8e-84 315.1 187 80.7
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 1.8e-83 313.2 196 74.5
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 2.4e-83 312.8 236 66.5
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 1.2e-82 310.5 217 67.7
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 4.5e-82 308.5 232 67.7
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.9e-80 303.1 240 63.3
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 3.2e-80 302.4 240 63.3
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 1.2e-79 300.4 228 64.0
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 1.6e-79 300.1 236 61.9
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 6.7e-78 294.7 227 63.0
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 5.7e-77 291.6 196 72.4
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 2.4e-75 286.2 148 94.6
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 1.0e-73 280.8 232 64.2
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 2.9e-73 279.3 216 63.0
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 2.9e-73 279.3 196 67.9
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 8.5e-73 277.7 213 63.4
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 7.2e-72 274.6 196 67.9
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 9.4e-72 274.2 217 61.8
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 2.1e-71 273.1 236 59.3
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.5e-69 266.9 167 74.9
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 1.4e-67 260.4 167 74.3
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 1.2e-66 257.3 231 54.1
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 8.5e-65 251.1 218 56.9
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 5.5e-64 248.4 159 76.1
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 1.2e-63 247.3 167 67.7
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 2.1e-63 246.5 219 54.8
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 7.4e-61 238.0 236 52.5
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 1.4e-59 233.8 203 57.6
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 1.2e-58 230.7 218 51.4
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 1.6e-58 230.3 237 51.9
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 2.6e-58 229.6 199 55.3
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 5.0e-57 225.3 234 49.1
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.6e-55 220.3 170 65.9
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 2.2e-49 199.9 152 62.5
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 2.1e-47 193.4 125 69.6
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 4.2e-40 169.1 182 47.8
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 1.6e-39 167.2 222 42.3
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 4.1e-35 152.5 213 45.5
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 1.3e-33 147.5 234 34.2
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 8.0e-31 138.3 144 54.2
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 5.8e-29 132.1 203 36.9
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 4.6e-26 122.5 73 83.6
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 9.5e-24 114.8 241 34.0
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 2.9e-20 103.2 70 71.4
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 3.9e-17 92.8 60 71.7
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 2.3e-14 83.6 60 65.0
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 6.4e-12 75.5 48 66.7
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.1e-11 74.7 59 57.6
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 5.4e-11 72.4 69 52.2
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 6.0e-10 68.9 66 53.0


User provided reference genes

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