Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G023800 Prunus persica HOM05D002139 ORTHO05D002264 1.5e-37 159.1 82 100.0
Prupe.6G147100 Prunus persica HOM05D002139 ORTHO05D002264 6.9e-27 123.6 65 93.8
MD03G1159400 Malus domestica HOM05D002139 ORTHO05D002264 6.0e-15 84.0 65 70.8
RcHm_v2.0_Chr5g0049041 Rosa chinensis HOM05D002139 ORTHO05D002264 1.9e-13 79.0 56 71.4
FAN21G1364 Fragaria x ananassa HOM05D002139 ORTHO05D002264 5.7e-13 77.4 59 66.1
FvH4_3g26160 Fragaria vesca HOM05D002139 ORTHO05D002264 1.6e-12 75.9 59 64.4
FAN11G0931 Fragaria x ananassa HOM05D002139 ORTHO05D002264 1.6e-12 75.9 59 64.4
Manes.08G035400 Manihot esculenta HOM05D002139 ORTHO05D002264 4.8e-12 74.3 50 70.0
Medtr1g055435 Medicago truncatula HOM05D002139 ORTHO05D002264 4.8e-12 74.3 64 62.5
CSS0027061 Camellia sinensis var. sinensis HOM05D002139 ORTHO05D002264 2.4e-11 72.0 58 56.9
Phvul.007G266700 Phaseolus vulgaris HOM05D002139 ORTHO05D002264 3.1e-11 71.6 64 56.2
Cfa010209 Carpinus fangiana HOM05D002139 ORTHO05D002264 4.0e-11 71.2 64 54.7
Haze_23589 Corylus avellana HOM05D002139 ORTHO05D002264 4.0e-11 71.2 68 52.9
CiPaw.09G022200 Carya illinoinensis HOM05D002139 ORTHO05D002264 6.9e-11 70.5 60 58.3
Gorai.001G126400 Gossypium raimondii HOM05D002139 ORTHO05D002264 6.9e-11 70.5 63 58.7
CSS0025933 Camellia sinensis var. sinensis HOM05D002139 ORTHO05D002264 9.0e-11 70.1 58 55.2
CiPaw.10G019300 Carya illinoinensis HOM05D002139 ORTHO05D002264 9.0e-11 70.1 50 66.0
Gohir.D07G117500 Gossypium hirsutum HOM05D002139 ORTHO05D002264 9.0e-11 70.1 63 58.7
AUR62030707 Chenopodium quinoa HOM05D002139 ORTHO05D002264 1.2e-10 69.7 55 60.0
Duzib170G0994 Durio zibethinus HOM05D002139 ORTHO05D002264 1.2e-10 69.7 48 68.8
Thecc.05G107700 Theobroma cacao HOM05D002139 ORTHO05D002264 1.2e-10 69.7 50 66.0
Thecc.09G270000 Theobroma cacao HOM05D002139 ORTHO05D002264 1.2e-10 69.7 64 57.8
TAR369G0016 Trochodendron aralioides HOM05D002139 ORTHO05D002264 1.2e-10 69.7 64 57.8
Eucgr.A02564 Eucalyptus grandis HOM05D002139 ORTHO05D002264 2.0e-10 68.9 64 56.2
Dinv12355 Davidia involucrata HOM05D002139 ORTHO05D002264 2.6e-10 68.6 52 67.3
Manes.11G103750 Manihot esculenta HOM05D002139 ORTHO05D002264 2.6e-10 68.6 61 59.0
Medtr1g055425 Medicago truncatula HOM05D002139 ORTHO05D002264 2.6e-10 68.6 68 52.9
arahy.Tifrunner.gnm1.ann1.BQ28WB Arachis hypogaea HOM05D002139 ORTHO05D002264 3.4e-10 68.2 51 60.8
arahy.Tifrunner.gnm1.ann1.J3XN27 Arachis hypogaea HOM05D002139 ORTHO05D002264 3.4e-10 68.2 51 60.8
CiPaw.13G120500 Carya illinoinensis HOM05D002139 ORTHO05D002264 3.4e-10 68.2 60 58.3
Gohir.D05G080300 Gossypium hirsutum HOM05D002139 ORTHO05D002264 4.5e-10 67.8 62 58.1
Nn2g14365 Nelumbo nucifera HOM05D002139 ORTHO05D002264 5.8e-10 67.4 52 61.5
TWI53G0030 Tripterygium wilfordii HOM05D002139 ORTHO05D002264 5.8e-10 67.4 58 58.6
Cpa.g.sc103.28 Carica papaya HOM05D002139 ORTHO05D002264 7.6e-10 67.0 66 56.1
Gohir.A05G077500 Gossypium hirsutum HOM05D002139 ORTHO05D002264 7.6e-10 67.0 62 58.1
TAR633G0116 Trochodendron aralioides HOM05D002139 ORTHO05D002264 7.6e-10 67.0 60 58.3
AUR62036347 Chenopodium quinoa HOM05D002139 ORTHO05D002264 1.0e-09 66.6 56 55.4
Lsat_1_v5_gn_6_34841 Lactuca sativa HOM05D002139 ORTHO05D002264 1.0e-09 66.6 66 51.5
VMungo0720G0286 Vigna mungo HOM05D002139 ORTHO05D002264 1.0e-09 66.6 64 56.2
Gorai.009G082000 Gossypium raimondii HOM05D002139 ORTHO05D002264 1.3e-09 66.2 57 57.9
Lj5g0006018 Lotus japonicus HOM05D002139 ORTHO05D002264 1.3e-09 66.2 57 59.6
Gohir.A04G055400 Gossypium hirsutum HOM05D002139 ORTHO05D002264 1.7e-09 65.9 54 57.4
AL3G23360 Arabidopsis lyrata HOM05D002139 ORTHO05D002264 2.2e-09 65.5 60 55.0
Glyma.10G083300 Glycine max HOM05D002139 ORTHO05D002264 2.2e-09 65.5 57 54.4
Os03g0788200 Oryza sativa ssp. japonica HOM05D002139 ORTHO05D002264 2.9e-09 65.1 57 59.6
GSVIVG01022566001 Vitis vinifera HOM05D002139 ORTHO05D002264 2.9e-09 65.1 64 54.7
Nn6g34623 Nelumbo nucifera HOM05D002139 ORTHO05D002264 3.8e-09 64.7 64 46.9
BraA01t04159Z Brassica rapa HOM05D002139 ORTHO05D002264 5.0e-09 64.3 61 50.8
Duzib093G2229 Durio zibethinus HOM05D002139 ORTHO05D002264 5.0e-09 64.3 54 57.4
LjContig00564g0008123 Lotus japonicus HOM05D002139 ORTHO05D002264 5.0e-09 64.3 68 54.4
LjContig00564g0015924 Lotus japonicus HOM05D002139 ORTHO05D002264 5.0e-09 64.3 68 54.4
Lalb_Chr02g0154331 Lupinus albus HOM05D002139 ORTHO05D002264 6.5e-09 63.9 57 50.9
Lalb_Chr06g0172701 Lupinus albus HOM05D002139 ORTHO05D002264 6.5e-09 63.9 51 58.8
PGR004G2773 Punica granatum HOM05D002139 ORTHO05D002264 6.5e-09 63.9 60 56.7
PGR119G2506 Punica granatum HOM05D002139 ORTHO05D002264 6.5e-09 63.9 54 57.4
Sc07g0006390 Simmondsia chinensis HOM05D002139 ORTHO05D002264 6.5e-09 63.9 61 54.1
Gohir.D04G092600 Gossypium hirsutum HOM05D002139 ORTHO05D002264 8.4e-09 63.5 65 50.8
Gorai.009G394500 Gossypium raimondii HOM05D002139 ORTHO05D002264 8.4e-09 63.5 65 50.8
Lj2A952G13 Lonicera japonica HOM05D002139 ORTHO05D002264 1.1e-08 63.2 60 61.7
CANSAT54G2328 Cannabis sativa HOM05D002139 ORTHO05D002264 1.4e-08 62.8 59 57.6
Ciclev10029501m.g Citrus clementina HOM05D002139 ORTHO05D002264 1.4e-08 62.8 54 55.6
HanXRQChr02g0053301 Helianthus annuus HOM05D002139 ORTHO05D002264 1.4e-08 62.8 66 50.0
GSVIVG01036048001 Vitis vinifera HOM05D002139 ORTHO05D002264 1.4e-08 62.8 60 50.0
Eucgr.J00584 Eucalyptus grandis HOM05D002139 ORTHO05D002264 1.9e-08 62.4 55 54.5
Actinidia06185 Actinidia chinensis HOM05D002139 ORTHO05D002264 2.5e-08 62.0 65 47.7
BcaC09g48193 Brassica carinata HOM05D002139 ORTHO05D002264 2.5e-08 62.0 61 50.8
BolC1t05288H Brassica oleracea HOM05D002139 ORTHO05D002264 2.5e-08 62.0 61 50.8
Thhalv10021698m.g Eutrema salsugineum HOM05D002139 ORTHO05D002264 2.5e-08 62.0 64 50.0
Gohir.A07G113800 Gossypium hirsutum HOM05D002139 ORTHO05D002264 2.5e-08 62.0 63 54.0
LjContig00564g0011880 Lotus japonicus HOM05D002139 ORTHO05D002264 2.5e-08 62.0 68 52.9
Rhsim01G0068700 Rhododendron simsii HOM05D002139 ORTHO05D002264 2.5e-08 62.0 54 61.1
Sp3g10010 Schrenkiella parvula HOM05D002139 ORTHO05D002264 2.5e-08 62.0 60 51.7
Cpa.g.sc1467.2 Carica papaya HOM05D002139 ORTHO05D002264 3.2e-08 61.6 50 60.0
PSO384G1674 Papaver somniferum HOM05D002139 ORTHO05D002264 3.2e-08 61.6 65 53.8
TPR.G9689 Trifolium pratense HOM05D002139 ORTHO05D002264 3.2e-08 61.6 72 52.8
TWI74G1382 Tripterygium wilfordii HOM05D002139 ORTHO05D002264 3.2e-08 61.6 64 50.0
TWI79G1050 Tripterygium wilfordii HOM05D002139 ORTHO05D002264 3.2e-08 61.6 56 57.1
A03p37280 Brassica napus HOM05D002139 ORTHO05D002264 4.2e-08 61.2 57 50.9
BraA03t12888Z Brassica rapa HOM05D002139 ORTHO05D002264 4.2e-08 61.2 57 50.9
COL.COLO4_25392 Corchorus olitorius HOM05D002139 ORTHO05D002264 4.2e-08 61.2 62 58.1
Dinv18855 Davidia involucrata HOM05D002139 ORTHO05D002264 4.2e-08 61.2 65 46.2
Thhalv10016064m.g Eutrema salsugineum HOM05D002139 ORTHO05D002264 4.2e-08 61.2 61 45.9
Potri.016G067800 Populus trichocarpa HOM05D002139 ORTHO05D002264 5.5e-08 60.8 63 57.1
Atru.chr3.3084 Acer truncatum HOM05D002139 ORTHO05D002264 7.1e-08 60.5 59 54.2
AT3G11780 Arabidopsis thaliana HOM05D002139 ORTHO05D002264 7.1e-08 60.5 60 51.7
Lj1A437T6 Lonicera japonica HOM05D002139 ORTHO05D002264 7.1e-08 60.5 65 56.9
Lj1C435G7 Lonicera japonica HOM05D002139 ORTHO05D002264 7.1e-08 60.5 65 56.9
PSO339G3407 Papaver somniferum HOM05D002139 ORTHO05D002264 7.1e-08 60.5 49 61.2
PGR142G1998 Punica granatum HOM05D002139 ORTHO05D002264 7.1e-08 60.5 53 58.5
Ca_11675_v3 Cicer arietinum L. HOM05D002139 ORTHO05D002264 9.3e-08 60.1 72 48.6
Os07g0159800 Oryza sativa ssp. japonica HOM05D002139 ORTHO05D002264 9.3e-08 60.1 43 65.1
Prupe.7G092100 Prunus persica HOM05D002139 ORTHO05D002264 9.3e-08 60.1 61 49.2
C03p45140 Brassica napus HOM05D002139 ORTHO05D002264 1.2e-07 59.7 57 50.9
CARHR206710 Cardamine hirsuta HOM05D002139 ORTHO05D002264 1.2e-07 59.7 62 51.6
Duzib106G1445 Durio zibethinus HOM05D002139 ORTHO05D002264 1.2e-07 59.7 54 55.6
Actinidia37762 Actinidia chinensis HOM05D002139 ORTHO05D002264 1.6e-07 59.3 64 50.0
ATR0697G252 Amborella trichopoda HOM05D002139 ORTHO05D002264 1.6e-07 59.3 55 56.4
arahy.Tifrunner.gnm1.ann1.FYG8ST Arachis hypogaea HOM05D002139 ORTHO05D002264 1.6e-07 59.3 68 50.0
BolC3t16778H Brassica oleracea HOM05D002139 ORTHO05D002264 1.6e-07 59.3 57 50.9
Psat2g024800 Pisum sativum HOM05D002139 ORTHO05D002264 1.6e-07 59.3 70 50.0
Zm00001eb117430 Zea mays HOM05D002139 ORTHO05D002264 1.6e-07 59.3 60 58.3
Carub.0003s1112 Capsella rubella HOM05D002139 ORTHO05D002264 2.1e-07 58.9 57 49.1
CDE04G2829 Ceratophyllum demersum HOM05D002139 ORTHO05D002264 2.1e-07 58.9 50 56.0
HanXRQChr13g0398591 Helianthus annuus HOM05D002139 ORTHO05D002264 2.1e-07 58.9 61 47.5
MD14G1041700 Malus domestica HOM05D002139 ORTHO05D002264 2.1e-07 58.9 66 48.5
Medtr5g085900 Medicago truncatula HOM05D002139 ORTHO05D002264 2.1e-07 58.9 70 50.0
QL01p019275 Quercus lobata HOM05D002139 ORTHO05D002264 2.1e-07 58.9 63 54.0
QL07p027306 Quercus lobata HOM05D002139 ORTHO05D002264 2.1e-07 58.9 51 60.8
TPR.G4661 Trifolium pratense HOM05D002139 ORTHO05D002264 2.1e-07 58.9 67 53.7
Zm00001eb060070 Zea mays HOM05D002139 ORTHO05D002264 2.1e-07 58.9 50 62.0
Psat6g126240 Pisum sativum HOM05D002139 ORTHO05D002264 2.7e-07 58.5 63 50.8
A05p37560 Brassica napus HOM05D002139 ORTHO05D002264 3.5e-07 58.2 54 48.1
BraA05t22554Z Brassica rapa HOM05D002139 ORTHO05D002264 3.5e-07 58.2 54 48.1
arahy.Tifrunner.gnm1.ann1.32EWNN Arachis hypogaea HOM05D002139 ORTHO05D002264 4.6e-07 57.8 68 48.5
CARHR086340 Cardamine hirsuta HOM05D002139 ORTHO05D002264 4.6e-07 57.8 57 49.1
Medtr4g050400 Medicago truncatula HOM05D002139 ORTHO05D002264 4.6e-07 57.8 67 55.2
BcaB04g18660 Brassica carinata HOM05D002139 ORTHO05D002264 6.1e-07 57.4 54 50.0
Dinv31779 Davidia involucrata HOM05D002139 ORTHO05D002264 6.1e-07 57.4 60 51.7
Lalb_Chr01g0005821 Lupinus albus HOM05D002139 ORTHO05D002264 6.1e-07 57.4 58 53.4
Potri.006G201400 Populus trichocarpa HOM05D002139 ORTHO05D002264 6.1e-07 57.4 56 51.8
Sabra16G0068800 Salix brachista HOM05D002139 ORTHO05D002264 6.1e-07 57.4 63 55.6
TPR.G14453 Trifolium pratense HOM05D002139 ORTHO05D002264 6.1e-07 57.4 76 46.1
CDE06G1690 Ceratophyllum demersum HOM05D002139 ORTHO05D002264 7.9e-07 57.0 55 49.1
Phvul.005G117800 Phaseolus vulgaris HOM05D002139 ORTHO05D002264 7.9e-07 57.0 63 52.4
Phvul.005G117866 Phaseolus vulgaris HOM05D002139 ORTHO05D002264 7.9e-07 57.0 63 52.4
Sabra08G0038500 Salix brachista HOM05D002139 ORTHO05D002264 7.9e-07 57.0 56 57.1
Glyma.13G311500 Glycine max HOM05D002139 ORTHO05D002264 1.0e-06 56.6 64 50.0
VMungo1080G0980 Vigna mungo HOM05D002139 ORTHO05D002264 1.0e-06 56.6 63 50.8
Actinidia07288 Actinidia chinensis HOM05D002139 ORTHO05D002264 1.3e-06 56.2 55 52.7
FAN05G4464 Fragaria x ananassa HOM05D002139 ORTHO05D002264 1.3e-06 56.2 63 44.4
Hma1.2p1_0064F.1_g034550 Hydrangea macrophylla HOM05D002139 ORTHO05D002264 1.3e-06 56.2 66 54.5
Psat7g200720 Pisum sativum HOM05D002139 ORTHO05D002264 1.3e-06 56.2 66 53.0
THA.LOC104816636 Tarenaya hassleriana HOM05D002139 ORTHO05D002264 1.3e-06 56.2 61 49.2
Ciclev10029503m.g Citrus clementina HOM05D002139 ORTHO05D002264 1.8e-06 55.8 58 46.6
Lalb_Chr10g0105681 Lupinus albus HOM05D002139 ORTHO05D002264 1.8e-06 55.8 58 50.0
Sp6g36380 Schrenkiella parvula HOM05D002139 ORTHO05D002264 1.8e-06 55.8 61 45.9
BraA10t45031Z Brassica rapa HOM05D002139 ORTHO05D002264 2.3e-06 55.5 56 50.0
Duzib150G1358 Durio zibethinus HOM05D002139 ORTHO05D002264 2.3e-06 55.5 65 43.1
FvH4_6g20650 Fragaria vesca HOM05D002139 ORTHO05D002264 2.3e-06 55.5 63 44.4
FAN02G1727 Fragaria x ananassa HOM05D002139 ORTHO05D002264 2.3e-06 55.5 63 44.4
FAN05G0316 Fragaria x ananassa HOM05D002139 ORTHO05D002264 2.3e-06 55.5 63 44.4
FAN14G5094 Fragaria x ananassa HOM05D002139 ORTHO05D002264 2.3e-06 55.5 63 44.4
Sc24g0002480 Simmondsia chinensis HOM05D002139 ORTHO05D002264 2.3e-06 55.5 65 44.6
AL6G16570 Arabidopsis lyrata HOM05D002139 ORTHO05D002264 3.0e-06 55.1 56 46.4
BcaC03g13167 Brassica carinata HOM05D002139 ORTHO05D002264 3.0e-06 55.1 51 54.9
C02p02710 Brassica napus HOM05D002139 ORTHO05D002264 3.0e-06 55.1 51 54.9
Ciclev10013007m.g Citrus clementina HOM05D002139 ORTHO05D002264 3.9e-06 54.7 59 47.5
Eucgr.K01917 Eucalyptus grandis HOM05D002139 ORTHO05D002264 3.9e-06 54.7 64 51.6
FAN09G2846 Fragaria x ananassa HOM05D002139 ORTHO05D002264 3.9e-06 54.7 62 45.2
Glyma.12G095800 Glycine max HOM05D002139 ORTHO05D002264 3.9e-06 54.7 67 47.8
Solyc10g081800.2 Solanum lycopersicum HOM05D002139 ORTHO05D002264 3.9e-06 54.7 59 47.5
Zm00001eb300320 Zea mays HOM05D002139 ORTHO05D002264 3.9e-06 54.7 70 50.0
EL10Ac7g16277 Beta vulgaris HOM05D002139 ORTHO05D002264 5.1e-06 54.3 55 50.9
CDE07G0340 Ceratophyllum demersum HOM05D002139 ORTHO05D002264 5.1e-06 54.3 56 44.6
Sopen10g032320 Solanum pennellii HOM05D002139 ORTHO05D002264 5.1e-06 54.3 59 47.5
CSS0029560 Camellia sinensis var. sinensis HOM05D002139 ORTHO05D002264 6.7e-06 53.9 41 61.0
Oeu020192.1 Olea europaea HOM05D002139 ORTHO05D002264 6.7e-06 53.9 58 50.0
RcHm_v2.0_Chr3g0476531 Rosa chinensis HOM05D002139 ORTHO05D002264 6.7e-06 53.9 61 45.9
SEGI_41573 Sequoiadendron giganteum HOM05D002139 ORTHO05D002264 6.7e-06 53.9 60 55.0
BcaB04g21116 Brassica carinata HOM05D002139 ORTHO05D002264 8.7e-06 53.5 54 48.1
Oeu003849.1 Olea europaea HOM05D002139 ORTHO05D002264 8.7e-06 53.5 52 55.8
Oeu045012.1 Olea europaea HOM05D002139 ORTHO05D002264 8.7e-06 53.5 57 45.6


User provided reference genes

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