Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 8.7e-82 307.0 163 100.0
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 6.2e-80 300.8 163 97.5
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 2.7e-67 258.8 162 84.0
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 3.8e-61 238.4 161 77.0
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 5.0e-61 238.0 161 78.3
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 2.5e-60 235.7 161 78.3
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 5.5e-60 234.6 161 77.0
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 7.2e-60 234.2 161 77.0
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.6e-59 233.0 161 77.6
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 1.6e-59 233.0 161 76.4
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 2.1e-59 232.6 161 77.0
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 2.1e-59 232.6 161 77.0
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 2.7e-59 232.3 161 76.4
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 3.6e-59 231.9 161 77.0
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 4.7e-59 231.5 161 76.4
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 6.1e-59 231.1 161 75.2
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.0e-58 230.3 161 75.8
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.4e-58 229.9 161 74.5
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.4e-58 229.9 161 74.5
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.4e-58 229.9 161 74.5
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.3e-58 229.2 161 73.9
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.3e-58 229.2 161 74.5
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 3.0e-58 228.8 161 73.3
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 3.9e-58 228.4 161 75.2
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.9e-58 228.4 161 72.0
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.9e-58 228.4 161 73.9
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 3.9e-58 228.4 162 72.8
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 3.9e-58 228.4 161 72.0
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 6.7e-58 227.6 161 73.3
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 8.8e-58 227.3 161 73.3
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.1e-57 226.9 161 72.7
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 4.4e-57 224.9 161 74.5
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.7e-56 223.0 161 72.7
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.7e-56 223.0 161 73.3
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.7e-56 223.0 161 75.8
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 1.7e-56 223.0 161 73.3
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 8.2e-56 220.7 162 73.5
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 8.2e-56 220.7 161 73.9
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.1e-55 220.3 162 73.5
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.1e-55 220.3 161 73.9
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.4e-55 219.9 161 70.8
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.4e-55 219.2 161 73.3
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.4e-55 219.2 161 70.8
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 5.3e-55 218.0 161 72.7
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 5.3e-55 218.0 163 70.6
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 5.3e-55 218.0 161 73.3
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 7.0e-55 217.6 160 71.9
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 9.1e-55 217.2 161 69.6
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 1.2e-54 216.9 161 71.4
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 1.5e-54 216.5 161 70.8
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.0e-54 216.1 161 72.0
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 2.0e-54 216.1 161 70.8
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 2.0e-54 216.1 161 70.8
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 2.6e-54 215.7 161 72.0
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 3.5e-54 215.3 161 70.2
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 4.5e-54 214.9 161 70.8
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 4.5e-54 214.9 161 72.7
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 1.0e-53 213.8 161 71.4
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 1.3e-53 213.4 161 71.4
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.3e-53 213.4 160 71.2
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.7e-53 213.0 161 67.7
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 2.9e-53 212.2 158 69.0
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 3.8e-53 211.8 161 70.2
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 5.0e-53 211.5 161 69.6
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 5.0e-53 211.5 161 68.9
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 6.5e-53 211.1 161 69.6
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 8.5e-53 210.7 161 68.3
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 8.5e-53 210.7 161 68.9
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 1.9e-52 209.5 158 69.6
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 2.5e-52 209.1 161 69.6
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.2e-52 208.8 161 68.3
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 3.2e-52 208.8 161 68.3
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 5.5e-52 208.0 161 68.9
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 5.5e-52 208.0 161 70.2
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 7.2e-52 207.6 158 69.0
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 7.2e-52 207.6 161 70.8
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 7.2e-52 207.6 160 69.4
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.2e-51 206.8 161 67.7
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.2e-51 206.8 162 68.5
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 1.2e-51 206.8 157 71.3
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.1e-51 206.1 161 68.3
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.7e-51 205.7 161 67.7
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 6.1e-51 204.5 161 67.1
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 1.8e-50 203.0 161 67.7
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.3e-50 202.6 161 67.7
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 2.3e-50 202.6 161 67.1
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 3.0e-50 202.2 161 66.5
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 3.9e-50 201.8 160 70.0
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 3.9e-50 201.8 147 72.1
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 5.2e-50 201.4 161 65.2
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 6.7e-50 201.1 161 65.2
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 6.7e-50 201.1 161 65.2
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 8.8e-50 200.7 161 66.5
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 8.8e-50 200.7 161 65.2
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-49 200.3 161 65.2
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-49 200.3 161 65.2
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 1.1e-49 200.3 161 65.2
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.1e-49 200.3 161 65.2
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.1e-49 200.3 161 67.1
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 1.1e-49 200.3 161 65.2
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 2.0e-49 199.5 161 65.2
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 4.4e-49 198.4 161 68.3
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 7.4e-49 197.6 161 65.2
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 9.7e-49 197.2 161 65.8
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 3.7e-48 195.3 161 64.0
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 4.8e-48 194.9 161 65.2
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.4e-47 193.4 153 66.7
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 2.4e-47 192.6 161 64.0
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 5.3e-47 191.4 183 59.6
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.6e-46 189.9 203 54.7
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.0e-45 187.2 144 71.5
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.3e-45 186.8 151 67.5
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 6.5e-45 184.5 161 62.1
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 1.4e-42 176.8 161 60.2
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 6.8e-42 174.5 162 60.5
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 6.8e-42 174.5 161 57.1
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 8.8e-42 174.1 155 62.6
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 8.8e-42 174.1 162 56.2
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 1.5e-41 173.3 161 61.5
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.7e-40 169.9 162 58.6
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 4.8e-40 168.3 162 53.7
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 5.3e-39 164.9 143 62.2
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 2.5e-36 156.0 143 58.7
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 1.6e-35 153.3 109 76.1
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.0e-34 150.6 109 71.6
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.0e-33 146.4 109 69.7
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 2.6e-33 146.0 126 66.7
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 5.7e-33 144.8 189 46.6
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 3.7e-32 142.1 161 52.2
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 8.3e-32 141.0 114 65.8
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.1e-31 140.6 103 69.9
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.4e-31 140.2 131 57.3
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.4e-31 139.4 143 58.7
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 9.1e-31 137.5 114 65.8
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 3.5e-30 135.6 114 64.0
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 2.3e-29 132.9 162 46.9
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 9.5e-28 127.5 121 55.4
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 9.5e-28 127.5 121 55.4
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 3.0e-26 122.5 137 54.0
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.2e-26 121.7 145 51.0
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.0e-25 119.8 90 71.1
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 4.9e-24 115.2 91 71.4
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 5.4e-23 111.7 156 43.6
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 9.2e-23 110.9 150 41.3
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 7.8e-22 107.8 161 42.9
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 1.0e-18 97.4 110 50.0
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.0e-18 97.4 59 86.4
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 8.9e-18 94.4 117 49.6
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.7e-16 90.1 66 72.7
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 2.9e-16 89.4 122 46.7
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 7.0e-15 84.7 109 46.8
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 9.2e-15 84.3 161 36.0
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 7.8e-14 81.3 79 57.0
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.3e-13 79.7 53 77.4
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.3e-12 75.9 77 54.5
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 4.3e-12 75.5 52 75.0
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 5.6e-12 75.1 85 49.4
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 9.5e-12 74.3 52 73.1
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 1.6e-11 73.6 102 43.1
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 4.7e-11 72.0 51 72.5
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 6.2e-11 71.6 51 72.5
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 6.2e-11 71.6 51 72.5
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 1.4e-10 70.5 56 73.2
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 2.0e-09 66.6 40 85.0
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 2.9e-08 62.8 53 62.3
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 3.2e-07 59.3 68 51.5
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 3.2e-07 59.3 68 51.5
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 3.2e-07 59.3 68 51.5
MD09G1147900 Malus domestica HOM05D003667 ORTHO05D248526 9.2e-07 57.8 44 65.9
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.6e-06 57.0 79 45.6
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.5e-06 55.8 109 37.6
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 4.6e-06 55.5 45 71.1


User provided reference genes

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