Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G013500 Prunus persica HOM05D004211 ORTHO05D005559 8.9e-49 196.4 87 100.0
Prupe.8G067100 Prunus persica HOM05D004211 ORTHO05D005559 6.2e-34 147.1 87 80.5
Prupe.4G124000 Prunus persica HOM05D004211 ORTHO05D005559 1.2e-26 122.9 130 51.5
RcHm_v2.0_Chr5g0022761 Rosa chinensis HOM05D004211 ORTHO05D005559 2.3e-25 118.6 83 69.9
RcHm_v2.0_Chr5g0022611 Rosa chinensis HOM05D004211 ORTHO05D005559 3.4e-24 114.8 73 72.6
TAR626G0199 Trochodendron aralioides HOM05D004211 ORTHO05D005559 7.5e-24 113.6 88 65.9
MD10G1219700 Malus domestica HOM05D004211 ORTHO05D005559 8.3e-23 110.2 130 45.4
Rhsim04G0003800 Rhododendron simsii HOM05D004211 ORTHO05D005559 3.0e-20 101.7 85 61.2
RcHm_v2.0_Chr5g0022861 Rosa chinensis HOM05D004211 ORTHO05D005559 6.6e-20 100.5 130 44.6
MBI07_g10940_MAGBIO Magnolia biondii HOM05D004211 ORTHO05D005559 8.6e-20 100.1 85 57.6
ATR0073G009 Amborella trichopoda HOM05D004211 ORTHO05D005559 2.5e-19 98.6 86 54.7
Actinidia03629 Actinidia chinensis HOM05D004211 ORTHO05D005559 3.3e-19 98.2 85 60.0
FvH4_3g13640 Fragaria vesca HOM05D004211 ORTHO05D005559 3.6e-18 94.7 130 42.3
FAN16G2270 Fragaria x ananassa HOM05D004211 ORTHO05D005559 3.6e-18 94.7 130 42.3
FAN21G1437 Fragaria x ananassa HOM05D004211 ORTHO05D005559 3.6e-18 94.7 130 42.3
Hma1.2p1_0151F.1_g066910 Hydrangea macrophylla HOM05D004211 ORTHO05D005559 4.7e-18 94.4 91 56.0
FAN11G0244 Fragaria x ananassa HOM05D004211 ORTHO05D005559 6.2e-18 94.0 130 41.5
SalBow8G2375 Salvia bowleyana HOM05D000936 ORTHO05D005107 6.2e-18 94.0 83 55.4
Lsat_1_v5_gn_7_61541 Lactuca sativa HOM05D004211 ORTHO05D005559 5.2e-17 90.9 82 56.1
Os01g0616400 Oryza sativa ssp. japonica HOM05D004211 ORTHO05D005559 1.7e-15 85.9 88 48.9
CDE04G2037 Ceratophyllum demersum HOM05D004211 ORTHO05D005559 4.9e-15 84.3 84 50.0
Ah.16g106500 Amaranthus hybridus HOM05D004211 ORTHO05D005559 1.1e-14 83.2 83 50.6
FAN11G3698 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.1e-14 83.2 120 40.0
HPP92_024149 Vanilla planifolia HOM05D004211 ORTHO05D005559 1.4e-14 82.8 86 48.8
HPP92_024197 Vanilla planifolia HOM05D004211 ORTHO05D005559 1.4e-14 82.8 86 48.8
TAR624G1163 Trochodendron aralioides HOM05D004211 ORTHO05D005559 4.2e-14 81.3 134 39.6
THA.LOC104816139 Tarenaya hassleriana HOM05D004211 ORTHO05D005559 7.1e-14 80.5 126 39.7
Nn1g09842 Nelumbo nucifera HOM05D004211 ORTHO05D005559 1.2e-13 79.7 131 38.9
Cc00_g09050 Coffea canephora HOM05D004211 ORTHO05D005559 6.0e-13 77.4 131 37.4
PSO541G3994 Papaver somniferum HOM05D004211 ORTHO05D005559 6.0e-13 77.4 127 37.8
Sp3g10830 Schrenkiella parvula HOM05D004211 ORTHO05D005559 6.0e-13 77.4 126 37.3
BcaB06g25524 Brassica carinata HOM05D004211 ORTHO05D005559 7.8e-13 77.0 126 37.3
AT3G12680 Arabidopsis thaliana HOM05D004211 ORTHO05D005559 1.0e-12 76.6 126 37.3
BcaC05g29248 Brassica carinata HOM05D004211 ORTHO05D005559 3.0e-12 75.1 126 36.5
A05p36820 Brassica napus HOM05D004211 ORTHO05D005559 3.0e-12 75.1 126 36.5
C05p55270 Brassica napus HOM05D004211 ORTHO05D005559 3.0e-12 75.1 126 36.5
BolC5t34192H Brassica oleracea HOM05D004211 ORTHO05D005559 3.0e-12 75.1 126 36.5
BraA05t22483Z Brassica rapa HOM05D004211 ORTHO05D005559 3.0e-12 75.1 126 36.5
Thhalv10020494m.g Eutrema salsugineum HOM05D004211 ORTHO05D005559 3.0e-12 75.1 126 38.1
Ciclev10004790m.g Citrus clementina HOM05D004211 ORTHO05D005559 3.9e-12 74.7 134 35.8
CsaV3_7G023160 Cucumis sativus L. HOM05D004211 ORTHO05D005559 3.9e-12 74.7 131 35.9
Eucgr.F04489 Eucalyptus grandis HOM05D004211 ORTHO05D005559 3.9e-12 74.7 131 34.4
GSVIVG01036686001 Vitis vinifera HOM05D004211 ORTHO05D005559 3.9e-12 74.7 131 38.2
Cpa.g.sc118.25 Carica papaya HOM05D004211 ORTHO05D005559 6.6e-12 73.9 129 37.2
ECA236G1665 Erigeron canadensis HOM05D000936 ORTHO05D005107 6.6e-12 73.9 124 39.5
QL04p096598 Quercus lobata HOM05D004211 ORTHO05D005559 6.6e-12 73.9 133 37.6
CANSAT56G2786 Cannabis sativa HOM05D004211 ORTHO05D005559 8.7e-12 73.6 131 35.9
Sabra08G0059800 Salix brachista HOM05D004211 ORTHO05D005559 1.1e-11 73.2 133 36.8
SGA_v2.0_scaffold7G03646 Striga asiatica HOM05D004211 ORTHO05D005559 1.1e-11 73.2 123 35.8
Aa31LG8G30 Aethionema arabicum HOM05D004211 ORTHO05D005559 1.5e-11 72.8 132 35.6
MBI10_g30432_MAGBIO Magnolia biondii HOM05D004211 ORTHO05D005559 1.5e-11 72.8 138 36.2
CiPaw.15G110200 Carya illinoinensis HOM05D004211 ORTHO05D005559 1.9e-11 72.4 132 38.6
TAR626G0775 Trochodendron aralioides HOM05D004211 ORTHO05D005559 1.9e-11 72.4 99 46.5
Aqoxy1G01339 Aquilegia oxysepala HOM05D004211 ORTHO05D005559 2.5e-11 72.0 141 35.5
Dinv42448 Davidia involucrata HOM05D004211 ORTHO05D005559 2.5e-11 72.0 131 33.6
Oeu017915.1 Olea europaea HOM05D000936 ORTHO05D005107 2.5e-11 72.0 125 33.6
Sed0019040 Sechium edule HOM05D004211 ORTHO05D005559 3.3e-11 71.6 133 36.1
Cfa017780 Carpinus fangiana HOM05D004211 ORTHO05D005559 4.3e-11 71.2 134 36.6
Dinv19567 Davidia involucrata HOM05D004211 ORTHO05D005559 7.3e-11 70.5 125 37.6
Migut.M01488 Erythranthe guttata HOM05D004211 ORTHO05D005559 7.3e-11 70.5 124 33.9
SGA_v2.0_scaffold186G40165 Striga asiatica HOM05D004211 ORTHO05D005559 7.3e-11 70.5 123 35.0
CARHR087190 Cardamine hirsuta HOM05D004211 ORTHO05D005559 1.3e-10 69.7 129 34.9
Hma1.2p1_0151F.1_g066875 Hydrangea macrophylla HOM05D004211 ORTHO05D005559 1.3e-10 69.7 131 37.4
Hma1.2p1_0151F.1_g066900 Hydrangea macrophylla HOM05D004211 ORTHO05D005559 1.3e-10 69.7 131 37.4
Lj8A191G24 Lonicera japonica HOM05D004211 ORTHO05D005559 1.3e-10 69.7 130 35.4
PGR031G0396 Punica granatum HOM05D004211 ORTHO05D005559 1.3e-10 69.7 134 34.3
CDE10G0346 Ceratophyllum demersum HOM05D004211 ORTHO05D005559 2.1e-10 68.9 134 32.8
HanXRQChr07g0190701 Helianthus annuus HOM05D004211 ORTHO05D005559 2.8e-10 68.6 124 33.9
Potri.008G080300 Populus trichocarpa HOM05D004211 ORTHO05D005559 2.8e-10 68.6 133 36.8
HanXRQChr11g0335901 Helianthus annuus HOM05D004211 ORTHO05D005559 3.6e-10 68.2 132 35.6
Atru.chr1.3 Acer truncatum HOM05D004211 ORTHO05D005559 4.8e-10 67.8 134 33.6
vmacro09759 Vaccinium macrocarpon HOM05D004211 ORTHO05D005559 4.8e-10 67.8 122 36.9
SEGI_15894 Sequoiadendron giganteum HOM05D004211 ORTHO05D005559 6.2e-10 67.4 89 44.9
CSS0016871 Camellia sinensis var. sinensis HOM05D004211 ORTHO05D005559 8.1e-10 67.0 133 36.1
Actinidia00850 Actinidia chinensis HOM05D004211 ORTHO05D005559 1.1e-09 66.6 129 35.7
CAN.G87.6 Capsicum annuum HOM05D004211 ORTHO05D005559 2.4e-09 65.5 69 50.7
Pp3c1_12940 Physcomitrium patens HOM05D004211 ORTHO05D005559 2.4e-09 65.5 81 42.0
MELO3C012579.2 Cucumis melo HOM05D004211 ORTHO05D005559 3.1e-09 65.1 39 74.4
Duzib187G0086 Durio zibethinus HOM05D004211 ORTHO05D005559 3.1e-09 65.1 125 34.4
Thecc.07G193200 Theobroma cacao HOM05D004211 ORTHO05D005559 3.1e-09 65.1 130 33.8
CBR_g24052 Chara braunii HOM05D004211 ORTHO05D005559 4.0e-09 64.7 95 36.8
Nitab4.5_0000007g0420 Nicotiana tabacum HOM05D004211 ORTHO05D005559 4.0e-09 64.7 70 51.4
unitig_899.g14754 Utricularia gibba HOM05D000568 ORTHO05D005559 4.0e-09 64.7 80 36.2
Ca_26791_v3 Cicer arietinum L. HOM05D004211 ORTHO05D005559 5.3e-09 64.3 125 35.2
COL.COLO4_32272 Corchorus olitorius HOM05D004211 ORTHO05D005559 5.3e-09 64.3 130 33.8
Lsat_1_v5_gn_7_111061 Lactuca sativa HOM05D004211 ORTHO05D005559 5.3e-09 64.3 72 51.4
Manes.03G076000 Manihot esculenta HOM05D004211 ORTHO05D005559 5.3e-09 64.3 133 33.1
EL10Ac2g03339 Beta vulgaris HOM05D004211 ORTHO05D005559 6.9e-09 63.9 133 36.1
DCAR_019902 Daucus carota HOM05D004211 ORTHO05D005559 6.9e-09 63.9 130 33.8
MSTRG.14576 Avicennia marina HOM05D004211 ORTHO05D005559 9.0e-09 63.5 125 31.2
Lj3g0001249 Lotus japonicus HOM05D004211 ORTHO05D005559 9.0e-09 63.5 125 35.2
MD14G1165100 Malus domestica HOM05D000568 ORTHO05D003200 9.0e-09 63.5 90 41.1
Peaxi162Scf00006g00236 Petunia axillaris HOM05D004211 ORTHO05D005559 9.0e-09 63.5 69 49.3
Sopen12g008190 Solanum pennellii HOM05D004211 ORTHO05D005559 9.0e-09 63.5 70 50.0
Gohir.D13G130600 Gossypium hirsutum HOM05D004211 ORTHO05D005559 1.2e-08 63.2 125 33.6
Potri.010G176300 Populus trichocarpa HOM05D004211 ORTHO05D005559 1.2e-08 63.2 133 35.3
THA.LOC104826401 Tarenaya hassleriana HOM05D004211 ORTHO05D005559 1.2e-08 63.2 113 32.7
TWI38G1531 Tripterygium wilfordii HOM05D004211 ORTHO05D005559 1.2e-08 63.2 40 72.5
Phvul.011G180700 Phaseolus vulgaris HOM05D004211 ORTHO05D005559 1.5e-08 62.8 126 34.9
Sabra10G0135700 Salix brachista HOM05D000936 ORTHO05D001411 1.5e-08 62.8 134 33.6
TWI38G0603 Tripterygium wilfordii HOM05D004211 ORTHO05D005559 1.5e-08 62.8 40 72.5
CDE10G0204 Ceratophyllum demersum HOM05D004211 ORTHO05D005559 2.0e-08 62.4 134 30.6
Gohir.A13G127000 Gossypium hirsutum HOM05D004211 ORTHO05D005559 2.6e-08 62.0 125 33.6
Gorai.013G146700 Gossypium raimondii HOM05D004211 ORTHO05D005559 2.6e-08 62.0 125 33.6
Solyc12g017410.2 Solanum lycopersicum HOM05D004211 ORTHO05D005559 2.6e-08 62.0 70 48.6
Nitab4.5_0001995g0020 Nicotiana tabacum HOM05D004211 ORTHO05D005559 3.4e-08 61.6 70 50.0
QL04p096516 Quercus lobata HOM05D000005 ORTHO05D000012 4.4e-08 61.2 133 32.3
arahy.Tifrunner.gnm1.ann1.0NLM3R Arachis hypogaea HOM05D004211 ORTHO05D005559 7.6e-08 60.5 124 34.7
arahy.Tifrunner.gnm1.ann1.ZP601Q Arachis hypogaea HOM05D004211 ORTHO05D005559 9.9e-08 60.1 124 34.7
Lalb_Chr03g0031981 Lupinus albus HOM05D004211 ORTHO05D005559 9.9e-08 60.1 125 33.6
Manes.16G055032 Manihot esculenta HOM05D004211 ORTHO05D005559 9.9e-08 60.1 131 32.1
Zm00001eb358260 Zea mays HOM05D004211 ORTHO05D005559 1.3e-07 59.7 90 35.6
MD14G1165300 Malus domestica HOM05D000568 ORTHO05D003200 2.2e-07 58.9 88 36.4
TPR.G30139 Trifolium pratense HOM05D004211 ORTHO05D005559 2.2e-07 58.9 129 34.9
Psat4g186640 Pisum sativum HOM05D004211 ORTHO05D005559 2.9e-07 58.5 129 31.0
Pp3c2_24140 Physcomitrium patens HOM05D004211 ORTHO05D005559 4.9e-07 57.8 82 34.1
Glyma.15G217400 Glycine max HOM05D004211 ORTHO05D005559 1.4e-06 56.2 126 31.7
CBR_g5575 Chara braunii HOM05D000568 ORTHO05D005559 3.2e-06 55.1 82 32.9
Haze_18447 Corylus avellana HOM05D004211 ORTHO05D005559 4.2e-06 54.7 85 34.1
AUR62026900 Chenopodium quinoa HOM05D004211 ORTHO05D005559 9.3e-06 53.5 56 51.8


User provided reference genes

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