Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G008500 Prunus persica HOM05D000881 ORTHO05D000666 8.2e-79 297.0 148 100.0
QL11p032427 Quercus lobata HOM05D000881 ORTHO05D000666 2.0e-16 89.7 150 37.3
COL.COLO4_32969 Corchorus olitorius HOM05D000881 ORTHO05D000666 8.3e-15 84.3 139 36.0
CANSAT78G0213 Cannabis sativa HOM05D000881 ORTHO05D000666 4.1e-14 82.0 150 34.0
Gorai.013G194400 Gossypium raimondii HOM05D000881 ORTHO05D000666 4.1e-14 82.0 141 36.9
Lj2g0006631 Lotus japonicus HOM05D000881 ORTHO05D000666 5.4e-14 81.6 144 37.5
Gohir.A13G164900 Gossypium hirsutum HOM05D000881 ORTHO05D000666 9.2e-14 80.9 136 37.5
Gohir.A08G219200 Gossypium hirsutum HOM05D000881 ORTHO05D000666 3.5e-13 79.0 150 35.3
Gohir.D08G236060 Gossypium hirsutum HOM05D000881 ORTHO05D000666 1.3e-12 77.0 150 35.3
Gorai.004G251100 Gossypium raimondii HOM05D000881 ORTHO05D000666 1.3e-12 77.0 150 35.3
Psat1g121560 Pisum sativum HOM05D000881 ORTHO05D000666 1.3e-12 77.0 143 32.9
TWI34G1202 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 1.3e-12 77.0 110 37.3
Cpa.g.sc161.5 Carica papaya HOM05D000881 ORTHO05D000666 1.7e-12 76.6 97 47.4
PGR042G3352 Punica granatum HOM05D000881 ORTHO05D000666 1.7e-12 76.6 94 46.8
QL10p034472 Quercus lobata HOM05D000881 ORTHO05D000666 3.0e-12 75.9 112 40.2
Thecc.05G246300 Theobroma cacao HOM05D000881 ORTHO05D000666 8.6e-12 74.3 141 38.3
CANSAT64G1865 Cannabis sativa HOM05D000881 ORTHO05D000666 1.1e-11 73.9 101 38.6
Duzib177G0536 Durio zibethinus HOM05D000881 ORTHO05D000666 1.1e-11 73.9 132 34.1
Lalb_Chr14g0370271 Lupinus albus HOM05D000881 ORTHO05D000666 1.5e-11 73.6 159 34.6
Migut.L01864 Erythranthe guttata HOM05D000881 ORTHO05D000666 1.9e-11 73.2 97 41.2
Manes.09G138800 Manihot esculenta HOM05D000881 ORTHO05D000666 2.5e-11 72.8 94 41.5
TPR.G19878 Trifolium pratense HOM05D000881 ORTHO05D000666 2.5e-11 72.8 150 32.7
TWI60G0863 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 3.3e-11 72.4 93 40.9
MD12G1007600 Malus domestica HOM05D000881 ORTHO05D000666 4.3e-11 72.0 160 34.4
MD14G1004900 Malus domestica HOM05D000881 ORTHO05D000666 4.3e-11 72.0 143 33.6
Potri.013G054900 Populus trichocarpa HOM05D000881 ORTHO05D000666 4.3e-11 72.0 123 35.0
Glyma.09G165300 Glycine max HOM05D000881 ORTHO05D000666 5.6e-11 71.6 135 33.3
Sabra13G0049400 Salix brachista HOM05D000881 ORTHO05D000666 5.6e-11 71.6 95 38.9
DCAR_009079 Daucus carota HOM05D000881 ORTHO05D000666 7.3e-11 71.2 101 41.6
Psat3g087960 Pisum sativum HOM05D000881 ORTHO05D000666 9.5e-11 70.9 108 37.0
Prupe.7G008300 Prunus persica HOM05D000881 ORTHO05D000666 9.5e-11 70.9 159 31.4
Gorai.004G251300 Gossypium raimondii HOM05D000881 ORTHO05D000666 1.2e-10 70.5 95 38.9
Sabra19G0049000 Salix brachista HOM05D000881 ORTHO05D000666 1.2e-10 70.5 97 41.2
SGA_v2.0_scaffold41G15791 Striga asiatica HOM05D000881 ORTHO05D000666 1.2e-10 70.5 99 38.4
FAN03G2527 Fragaria x ananassa HOM05D000881 ORTHO05D000666 2.1e-10 69.7 155 29.0
Gohir.D08G236100 Gossypium hirsutum HOM05D000881 ORTHO05D000666 2.1e-10 69.7 95 38.9
Gohir.D13G167700 Gossypium hirsutum HOM05D000881 ORTHO05D000666 2.1e-10 69.7 117 35.9
RcHm_v2.0_Chr3g0496541 Rosa chinensis HOM05D000881 ORTHO05D000666 2.1e-10 69.7 150 34.0
MSTRG.10426 Avicennia marina HOM05D000881 ORTHO05D000666 2.8e-10 69.3 100 40.0
CANSAT78G1545 Cannabis sativa HOM05D000881 ORTHO05D000666 4.7e-10 68.6 96 39.6
Actinidia37794 Actinidia chinensis HOM05D000881 ORTHO05D000666 6.2e-10 68.2 112 39.3
Gohir.A08G219300 Gossypium hirsutum HOM05D000881 ORTHO05D000666 8.1e-10 67.8 154 31.2
Rhsim03G0053800 Rhododendron simsii HOM05D000881 ORTHO05D000666 1.1e-09 67.4 158 31.0
TPR.G11722 Trifolium pratense HOM05D000881 ORTHO05D000666 1.1e-09 67.4 95 38.9
arahy.Tifrunner.gnm1.ann1.Y8A2Y7 Arachis hypogaea HOM05D000881 ORTHO05D000666 1.8e-09 66.6 128 33.6
arahy.Tifrunner.gnm1.ann1.J1HUHD Arachis hypogaea HOM05D000881 ORTHO05D000666 2.4e-09 66.2 123 34.1
Medtr6g478190 Medicago truncatula HOM05D000881 ORTHO05D000666 2.4e-09 66.2 141 32.6
CSS0033822 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 3.1e-09 65.9 157 35.0
Ciclev10022272m.g Citrus clementina HOM05D000881 ORTHO05D000666 4.0e-09 65.5 100 39.0
FvH4_7g04830 Fragaria vesca HOM05D000881 ORTHO05D000666 4.0e-09 65.5 156 28.2
FAN06G1651 Fragaria x ananassa HOM05D000881 ORTHO05D000666 4.0e-09 65.5 156 28.2
Nitab4.5_0002131g0030 Nicotiana tabacum HOM05D000881 ORTHO05D000666 4.0e-09 65.5 97 44.3
Sabra09G0120900 Salix brachista HOM05D000881 ORTHO05D000666 4.0e-09 65.5 93 37.6
CiPaw.09G165100 Carya illinoinensis HOM05D000881 ORTHO05D000666 5.2e-09 65.1 143 30.1
Cfa017684 Carpinus fangiana HOM05D000881 ORTHO05D000666 6.8e-09 64.7 135 36.3
ClCG04G012640 Citrullus lanatus HOM05D000881 ORTHO05D000666 6.8e-09 64.7 162 28.4
Cc06_g07270 Coffea canephora HOM05D000881 ORTHO05D000666 6.8e-09 64.7 101 39.6
Sc01g0005070 Simmondsia chinensis HOM05D000881 ORTHO05D000666 6.8e-09 64.7 99 38.4
Glyma.16G038600 Glycine max HOM05D000881 ORTHO05D000666 8.9e-09 64.3 103 35.0
Atru.chr2.1411 Acer truncatum HOM05D000881 ORTHO05D000666 1.2e-08 63.9 93 36.6
CiPaw.16G038500 Carya illinoinensis HOM05D000881 ORTHO05D000666 1.2e-08 63.9 142 32.4
ECA248G1779 Erigeron canadensis HOM05D002395 ORTHO05D000666 1.2e-08 63.9 93 37.6
Glyma.19G114200 Glycine max HOM05D000881 ORTHO05D000666 1.2e-08 63.9 103 35.0
RcHm_v2.0_Chr3g0496561 Rosa chinensis HOM05D000881 ORTHO05D000666 1.2e-08 63.9 152 28.3
Ciclev10022629m.g Citrus clementina HOM05D000881 ORTHO05D000666 1.5e-08 63.5 103 36.9
MD06G1239100 Malus domestica HOM05D000881 ORTHO05D000666 2.0e-08 63.2 150 32.7
SGA_v2.0_scaffold392G50662 Striga asiatica HOM05D000881 ORTHO05D000666 2.0e-08 63.2 97 38.1
MELO3C001943.2 Cucumis melo HOM05D000881 ORTHO05D000666 2.6e-08 62.8 161 30.4
Medtr5g087450 Medicago truncatula HOM05D000881 ORTHO05D000666 2.6e-08 62.8 95 38.9
Haze_03567 Corylus avellana HOM05D021788 ORTHO05D000666 3.4e-08 62.4 88 35.2
Dinv25100 Davidia involucrata HOM05D000881 ORTHO05D000666 3.4e-08 62.4 94 40.4
LjContig00564g0002053 Lotus japonicus HOM05D000881 ORTHO05D000666 3.4e-08 62.4 106 37.7
LjContig00564g0024719 Lotus japonicus HOM05D000881 ORTHO05D000666 3.4e-08 62.4 94 38.3
Actinidia03944 Actinidia chinensis HOM05D000881 ORTHO05D000666 4.4e-08 62.0 125 36.0
Haze_03451 Corylus avellana HOM05D000881 ORTHO05D000666 4.4e-08 62.0 141 31.2
Haze_03455 Corylus avellana HOM05D000881 ORTHO05D000666 4.4e-08 62.0 141 31.2
Dinv11927 Davidia involucrata HOM05D000881 ORTHO05D000666 4.4e-08 62.0 95 35.8
Oeu044647.1 Olea europaea HOM05D000881 ORTHO05D000666 4.4e-08 62.0 101 33.7
Phvul.001G113500 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 4.4e-08 62.0 97 36.1
Potri.019G037700 Populus trichocarpa HOM05D000881 ORTHO05D000666 4.4e-08 62.0 119 30.3
CiPaw.16G038300 Carya illinoinensis HOM05D000881 ORTHO05D000666 5.8e-08 61.6 151 31.1
EL10Ac5g11762 Beta vulgaris HOM05D000881 ORTHO05D000666 7.6e-08 61.2 94 36.2
CSS0021436 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 7.6e-08 61.2 104 41.3
Lalb_Chr14g0364621 Lupinus albus HOM05D000881 ORTHO05D000666 7.6e-08 61.2 98 33.7
Haze_03563 Corylus avellana HOM05D021788 ORTHO05D000666 9.9e-08 60.8 88 35.2
Potri.004G191101 Populus trichocarpa HOM05D000881 ORTHO05D000666 9.9e-08 60.8 93 35.5
Potri.004G191200 Populus trichocarpa HOM05D000881 ORTHO05D000666 9.9e-08 60.8 93 35.5
Sabra04G0129700 Salix brachista HOM05D000881 ORTHO05D000666 9.9e-08 60.8 92 37.0
AUR62034145 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.3e-07 60.5 94 34.0
Lsat_1_v5_gn_1_56241 Lactuca sativa HOM05D000881 ORTHO05D000666 1.3e-07 60.5 95 38.9
Manes.04G059912 Manihot esculenta HOM05D000881 ORTHO05D000666 1.3e-07 60.5 113 35.4
Phvul.004G140900 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 1.3e-07 60.5 131 30.5
Cfa017677 Carpinus fangiana HOM05D000881 ORTHO05D000666 1.7e-07 60.1 156 32.1
Thhalv10002090m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 1.7e-07 60.1 98 36.7
Peaxi162Scf00003g05370 Petunia axillaris HOM05D000881 ORTHO05D000666 1.7e-07 60.1 155 34.2
Actinidia03943 Actinidia chinensis HOM05D000881 ORTHO05D000666 2.2e-07 59.7 96 39.6
Manes.11G105400 Manihot esculenta HOM05D000881 ORTHO05D000666 2.2e-07 59.7 93 37.6
Potri.009G153200 Populus trichocarpa HOM05D000881 ORTHO05D000666 2.2e-07 59.7 95 38.9
Hund15056 Selenicereus undatus HOM05D000881 ORTHO05D000666 2.2e-07 59.7 91 38.5
TWI31G1146 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 2.2e-07 59.7 101 36.6
AUR62036271 Chenopodium quinoa HOM05D000881 ORTHO05D000666 2.9e-07 59.3 99 35.4
Manes.09G138700 Manihot esculenta HOM05D000881 ORTHO05D000666 2.9e-07 59.3 113 38.1
Psat2g023400 Pisum sativum HOM05D000881 ORTHO05D000666 2.9e-07 59.3 97 34.0
Phvul.009G196600 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 3.8e-07 58.9 95 35.8
PGR119G0695 Punica granatum HOM05D000881 ORTHO05D000666 3.8e-07 58.9 100 37.0
Sabra04G0129800 Salix brachista HOM05D000881 ORTHO05D000666 3.8e-07 58.9 92 35.9
arahy.Tifrunner.gnm1.ann1.ZVX95B Arachis hypogaea HOM05D000881 ORTHO05D000666 4.9e-07 58.5 94 40.4
AUR62039721 Chenopodium quinoa HOM05D000881 ORTHO05D000666 4.9e-07 58.5 94 35.1
Ciclev10016041m.g Citrus clementina HOM05D000881 ORTHO05D000666 4.9e-07 58.5 99 37.4
Haze_03560 Corylus avellana HOM05D021788 ORTHO05D000666 4.9e-07 58.5 90 35.6
VMungo0331G1612 Vigna mungo HOM05D008573 ORTHO05D009911 4.9e-07 58.5 128 30.5
Lalb_Chr10g0105781 Lupinus albus HOM05D000881 ORTHO05D000666 6.4e-07 58.2 95 36.8
Nn2g14889 Nelumbo nucifera HOM05D000881 ORTHO05D000666 6.4e-07 58.2 105 35.2
CARHR119520 Cardamine hirsuta HOM05D000881 ORTHO05D000666 8.4e-07 57.8 105 36.2
Sp4g09910 Schrenkiella parvula HOM05D000881 ORTHO05D000666 8.4e-07 57.8 98 33.7
arahy.Tifrunner.gnm1.ann1.PZF4SB Arachis hypogaea HOM05D000881 ORTHO05D000666 1.1e-06 57.4 94 40.4
HanXRQChr16g0516881 Helianthus annuus HOM05D000881 ORTHO05D000666 1.1e-06 57.4 89 32.6
Nn2g15728 Nelumbo nucifera HOM05D000881 ORTHO05D000666 1.1e-06 57.4 102 33.3
vmacro07553 Vaccinium macrocarpon HOM05D000881 ORTHO05D000666 1.1e-06 57.4 95 40.0
CsaV3_1G041760 Cucumis sativus L. HOM05D000881 ORTHO05D000666 1.4e-06 57.0 94 38.3
HanXRQChr15g0470771 Helianthus annuus HOM05D000881 ORTHO05D000666 1.4e-06 57.0 102 31.4
MBI11_g07703_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 1.4e-06 57.0 106 33.0
Nitab4.5_0000123g0010 Nicotiana tabacum HOM05D000881 ORTHO05D000666 1.4e-06 57.0 110 39.1
VMungo1309G2673 Vigna mungo HOM05D000881 ORTHO05D000666 1.4e-06 57.0 95 36.8
Cpa.g.sc103.98 Carica papaya HOM05D000881 ORTHO05D000666 1.9e-06 56.6 93 37.6
Oeu027605.1 Olea europaea HOM05D000881 ORTHO05D000666 1.9e-06 56.6 96 30.2
Sed0019450 Sechium edule HOM05D000881 ORTHO05D000666 1.9e-06 56.6 98 31.6
BcaB01g03051 Brassica carinata HOM05D000881 ORTHO05D000666 2.4e-06 56.2 98 32.7
Dinv05245 Davidia involucrata HOM05D000881 ORTHO05D000666 2.4e-06 56.2 98 34.7
TWI75G0903 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 2.4e-06 56.2 102 36.3
Aa31LG5G8550 Aethionema arabicum HOM05D000881 ORTHO05D000666 3.2e-06 55.8 105 33.3
EL10Ac4g08752 Beta vulgaris HOM05D000881 ORTHO05D000666 3.2e-06 55.8 100 31.0
Lsat_1_v5_gn_4_63061 Lactuca sativa HOM05D000881 ORTHO05D000666 3.2e-06 55.8 99 31.3
Lalb_Chr04g0249781 Lupinus albus HOM05D000881 ORTHO05D000666 3.2e-06 55.8 100 32.0
MBI11_g45239_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 3.2e-06 55.8 98 31.6
unitig_0.g2304 Utricularia gibba HOM05D000881 ORTHO05D000080 3.2e-06 55.8 93 31.2
HPP92_028049 Vanilla planifolia HOM05D000881 ORTHO05D000666 3.2e-06 55.8 95 34.7
Ah.12g059710 Amaranthus hybridus HOM05D000881 ORTHO05D000666 4.2e-06 55.5 144 29.9
Glyma.14G045300 Glycine max HOM05D000881 ORTHO05D000666 4.2e-06 55.5 101 38.6
Manes.04G055300 Manihot esculenta HOM05D000881 ORTHO05D000666 4.2e-06 55.5 93 38.7
Medtr5g087470 Medicago truncatula HOM05D000881 ORTHO05D000666 4.2e-06 55.5 105 34.3
HPP92_028054 Vanilla planifolia HOM05D000881 ORTHO05D000666 4.2e-06 55.5 124 32.3
Actinidia21135 Actinidia chinensis HOM05D001769 ORTHO05D001695 5.4e-06 55.1 94 35.1
Ah.02g115190 Amaranthus hybridus HOM05D000881 ORTHO05D000666 5.4e-06 55.1 100 34.0
ECA236G4220 Erigeron canadensis HOM05D000881 ORTHO05D000666 5.4e-06 55.1 92 33.7
Lsat_1_v5_gn_7_14200 Lactuca sativa HOM05D000881 ORTHO05D000666 5.4e-06 55.1 94 33.0
Eucgr.J00611 Eucalyptus grandis HOM05D000881 ORTHO05D000666 7.1e-06 54.7 104 31.7
MD14G1005100 Malus domestica HOM05D000881 ORTHO05D000666 7.1e-06 54.7 142 29.6
AL4G20880 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 9.2e-06 54.3 93 34.4
arahy.Tifrunner.gnm1.ann1.DQ4RIU Arachis hypogaea HOM05D000881 ORTHO05D000666 9.2e-06 54.3 100 33.0
EL10Ac7g16246 Beta vulgaris HOM05D000881 ORTHO05D000666 9.2e-06 54.3 104 33.7
A03p26740 Brassica napus HOM05D000881 ORTHO05D000666 9.2e-06 54.3 98 31.6
Gorai.004G012000 Gossypium raimondii HOM05D000881 ORTHO05D000666 9.2e-06 54.3 108 34.3
MBI11_g07704_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 9.2e-06 54.3 100 31.0


User provided reference genes

Program Settings