Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 2.0e-164 582.4 303 100.0
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 5.6e-90 335.1 318 60.7
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 5.9e-84 315.1 322 58.4
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 1.2e-63 247.7 335 50.7
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 2.2e-62 243.4 323 50.8
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 1.4e-61 240.7 319 53.6
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 8.7e-59 231.5 326 50.0
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 1.6e-57 227.3 323 49.8
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 6.2e-57 225.3 323 49.2
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 9.0e-56 221.5 319 47.3
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.2e-55 221.1 323 48.6
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 1.5e-55 220.7 312 44.9
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 2.0e-55 220.3 312 44.6
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.2e-54 216.9 312 48.7
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 2.4e-53 213.4 330 44.2
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 2.4e-53 213.4 330 44.2
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 7.1e-53 211.8 319 46.1
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.3e-51 207.6 320 45.3
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.5e-50 204.1 334 43.4
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 1.3e-49 201.1 310 44.8
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 3.6e-49 199.5 330 42.7
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.1e-48 198.0 320 43.1
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 1.8e-48 197.2 319 43.3
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 4.5e-47 192.6 331 43.8
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 9.9e-47 191.4 311 42.1
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 2.2e-46 190.3 321 44.2
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.6e-44 184.1 280 47.1
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 2.7e-44 183.3 323 42.4
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 3.5e-44 183.0 311 42.8
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 3.9e-43 179.5 315 41.3
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 6.7e-43 178.7 314 42.0
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 6.7e-43 178.7 320 40.9
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 1.1e-42 177.9 307 42.0
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 3.3e-42 176.4 315 41.6
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 3.3e-42 176.4 323 40.9
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 3.3e-42 176.4 308 41.2
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 4.3e-42 176.0 315 41.0
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 9.6e-42 174.9 305 43.3
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 3.7e-41 172.9 280 43.9
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 6.2e-41 172.2 324 42.3
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 8.1e-41 171.8 320 40.0
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 8.1e-41 171.8 317 39.7
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 1.1e-40 171.4 308 39.9
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 1.8e-40 170.6 308 39.6
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 3.1e-40 169.9 316 39.9
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 9.0e-40 168.3 312 40.7
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 9.0e-40 168.3 325 41.2
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 1.5e-39 167.5 315 41.9
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 2.6e-39 166.8 327 41.3
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 2.6e-39 166.8 323 41.8
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.6e-39 166.8 313 40.3
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 4.5e-39 166.0 315 39.7
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 4.5e-39 166.0 317 40.1
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 2.2e-38 163.7 319 37.9
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.1e-37 161.4 306 38.6
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 1.4e-37 161.0 322 40.7
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 1.9e-37 160.6 327 39.4
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 3.2e-37 159.8 250 44.0
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 4.2e-37 159.5 303 38.9
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 5.5e-37 159.1 314 37.6
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 7.1e-37 158.7 308 39.9
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 1.2e-36 157.9 311 39.2
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 7.9e-36 155.2 338 37.9
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 1.0e-35 154.8 319 40.1
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 1.0e-35 154.8 313 38.0
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 1.0e-35 154.8 305 38.0
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 5.1e-35 152.5 313 38.0
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 5.1e-35 152.5 308 38.0
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 6.7e-35 152.1 324 34.3
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 8.7e-35 151.8 327 37.0
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.1e-34 151.4 292 40.4
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.1e-34 151.4 274 39.8
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 9.6e-34 148.3 325 35.7
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 9.6e-34 148.3 324 35.2
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 2.1e-33 147.1 319 39.5
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 2.8e-33 146.7 322 38.5
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 3.7e-33 146.4 315 36.8
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 3.7e-33 146.4 311 38.3
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.4e-32 144.4 311 39.5
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 3.1e-32 143.3 320 39.7
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 4.0e-32 142.9 317 36.6
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 1.2e-31 141.4 315 34.3
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 1.5e-31 141.0 310 33.9
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.5e-31 141.0 320 37.5
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 1.5e-31 141.0 309 37.5
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 1.5e-31 141.0 308 35.4
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 2.0e-31 140.6 314 34.1
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 3.4e-31 139.8 313 35.5
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 1.3e-30 137.9 323 37.5
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.3e-30 137.9 316 35.1
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 2.9e-30 136.7 323 36.8
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 6.5e-30 135.6 319 34.8
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 8.4e-30 135.2 307 37.1
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 9.3e-29 131.7 317 34.4
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 1.2e-28 131.3 310 33.2
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 1.2e-28 131.3 325 34.2
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 2.7e-28 130.2 316 35.1
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 1.3e-27 127.9 313 33.5
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 1.8e-27 127.5 319 33.9
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 3.0e-27 126.7 315 34.0
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.9e-26 124.0 320 32.8
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.9e-26 124.0 193 42.0
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 3.3e-26 123.2 313 33.5
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 4.3e-26 122.9 313 33.2
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 5.7e-26 122.5 322 35.4
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 7.4e-26 122.1 317 33.8
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 7.4e-26 122.1 317 33.8
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 7.4e-26 122.1 317 33.8
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 7.4e-26 122.1 317 33.8
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 9.7e-26 121.7 312 32.7
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 1.6e-25 120.9 318 33.6
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 1.6e-25 120.9 318 33.6
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 2.8e-25 120.2 329 34.3
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 2.8e-25 120.2 323 33.4
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 2.8e-25 120.2 328 32.6
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 4.8e-25 119.4 323 33.7
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 4.8e-25 119.4 326 35.6
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 6.3e-25 119.0 315 34.9
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 6.3e-25 119.0 313 33.9
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.4e-24 117.9 328 32.9
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 1.4e-24 117.9 316 32.6
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 1.8e-24 117.5 319 33.9
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 2.4e-24 117.1 313 32.3
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 4.1e-24 116.3 316 33.2
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 4.1e-24 116.3 313 31.9
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 4.1e-24 116.3 312 31.1
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 5.3e-24 115.9 299 36.1
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 5.3e-24 115.9 324 33.0
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 9.0e-24 115.2 319 32.9
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 1.5e-23 114.4 281 36.7
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 3.4e-23 113.2 319 33.9
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 1.7e-22 110.9 315 33.0
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 2.2e-22 110.5 314 33.1
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 2.2e-22 110.5 322 32.0
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 5.0e-22 109.4 269 37.2
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 6.5e-22 109.0 325 32.0
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 8.5e-22 108.6 318 34.0
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 1.9e-21 107.5 174 42.0
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 2.5e-21 107.1 91 56.0
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 3.2e-21 106.7 317 31.2
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 7.2e-21 105.5 302 28.8
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 7.2e-21 105.5 300 33.3
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 9.4e-21 105.1 306 33.7
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 9.4e-21 105.1 308 29.9
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 2.7e-20 103.6 325 31.1
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 3.6e-20 103.2 323 30.3
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 6.1e-20 102.4 294 30.3
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 3.9e-19 99.8 184 37.5
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 8.8e-19 98.6 94 54.3
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 1.1e-18 98.2 308 27.6
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 1.5e-18 97.8 186 35.5
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.5e-18 97.8 309 31.1
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 1.9e-18 97.4 297 29.6
FAN28G1691 Fragaria x ananassa HOM05D003715 ORTHO05D003958 7.4e-18 95.5 155 45.8
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 9.7e-18 95.1 310 30.3
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 9.7e-18 95.1 305 30.5
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 9.7e-18 95.1 301 29.6
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 1.7e-17 94.4 301 28.9
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.2e-17 94.0 230 32.2
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.1e-16 91.7 308 29.2
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 1.4e-16 91.3 309 28.8
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 3.1e-16 90.1 239 35.6
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 3.1e-16 90.1 270 32.6
TAR633G2325 Trochodendron aralioides HOM05D003715 ORTHO05D003958 3.1e-16 90.1 151 44.4
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 4.1e-16 89.7 238 33.6
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 9.1e-16 88.6 314 30.6
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 4.5e-15 86.3 308 28.9
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 7.7e-15 85.5 308 28.6
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.7e-14 84.3 304 29.3
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 2.9e-14 83.6 307 27.0
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.9e-14 83.6 307 30.0
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 6.5e-14 82.4 303 30.0
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 1.4e-13 81.3 97 41.2
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 2.5e-13 80.5 252 34.9
Peaxi162Scf00249g00717 Petunia axillaris HOM05D003715 ORTHO05D003958 7.9e-12 75.5 238 31.5
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 7.9e-12 75.5 288 29.5
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.0e-11 75.1 309 28.2
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 2.3e-11 73.9 174 32.8
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 9.7e-10 68.6 68 51.5
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 9.7e-10 68.6 95 38.9
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 9.1e-08 62.0 151 33.8
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 2.2e-06 57.4 94 42.6
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 2.9e-06 57.0 93 38.7
unitig_0.g211 Utricularia gibba HOM05D003715 ORTHO05D003958 6.5e-06 55.8 304 23.7


User provided reference genes

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