Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G002400 Prunus persica HOM05D006942 ORTHO05D008737 1.6e-123 446.0 222 100.0
MD12G1002500 Malus domestica HOM05D006942 ORTHO05D008737 2.9e-80 302.4 169 87.0
RcHm_v2.0_Chr5g0046891 Rosa chinensis HOM05D006942 ORTHO05D008737 2.9e-80 302.4 165 86.7
GSVIVG01033386001 Vitis vinifera HOM05D006942 ORTHO05D008737 3.2e-79 298.9 165 85.5
FAN16G3006 Fragaria x ananassa HOM05D006942 ORTHO05D008737 3.0e-77 292.4 165 83.0
FAN21G2944 Fragaria x ananassa HOM05D006942 ORTHO05D008737 5.2e-77 291.6 165 83.0
Nn7g35832 Nelumbo nucifera HOM05D006942 ORTHO05D008737 6.7e-77 291.2 165 83.0
Potri.013G059500 Populus trichocarpa HOM05D006942 ORTHO05D008737 6.7e-77 291.2 165 83.6
FvH4_3g25250 Fragaria vesca HOM05D006942 ORTHO05D008737 2.0e-76 289.7 161 83.9
Manes.08G149200 Manihot esculenta HOM05D006942 ORTHO05D008737 2.6e-76 289.3 165 82.4
TAR633G0669 Trochodendron aralioides HOM05D006942 ORTHO05D008737 2.6e-76 289.3 163 84.0
CiPaw.09G001300 Carya illinoinensis HOM05D006942 ORTHO05D008737 1.7e-75 286.6 153 88.2
TAR623G0107 Trochodendron aralioides HOM05D002140 ORTHO05D002382 1.7e-75 286.6 165 83.0
TWI34G0045 Tripterygium wilfordii HOM05D006942 ORTHO05D008737 2.8e-75 285.8 165 83.0
Gohir.D13G109500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.1e-74 283.9 165 80.6
Gorai.013G123100 Gossypium raimondii HOM05D006942 ORTHO05D008737 1.1e-74 283.9 165 80.6
Sabra13G0052800 Salix brachista HOM05D006942 ORTHO05D008737 1.1e-74 283.9 153 87.6
Thecc.05G293100 Theobroma cacao HOM05D006942 ORTHO05D008737 2.4e-74 282.7 165 81.2
Atru.chr2.1323 Acer truncatum HOM05D006942 ORTHO05D008737 4.1e-74 282.0 163 81.6
Nn2g15884 Nelumbo nucifera HOM05D002140 ORTHO05D008737 7.0e-74 281.2 165 80.0
QL07p020181 Quercus lobata HOM05D006942 ORTHO05D008737 9.1e-74 280.8 161 82.6
Duzib177G1195 Durio zibethinus HOM05D006942 ORTHO05D008737 1.2e-73 280.4 165 80.6
vmacro09146 Vaccinium macrocarpon HOM05D006942 ORTHO05D008737 1.2e-73 280.4 165 81.8
THA.LOC104823787 Tarenaya hassleriana HOM05D006942 ORTHO05D008737 1.6e-73 280.0 165 78.8
Aa31LG2G1990 Aethionema arabicum HOM05D006942 ORTHO05D008737 3.5e-73 278.9 165 78.8
COL.COLO4_13617 Corchorus olitorius HOM05D006942 ORTHO05D008737 1.0e-72 277.3 165 79.4
MBI11_g05460_MAGBIO Magnolia biondii HOM05D006942 ORTHO05D008737 1.3e-72 276.9 163 79.1
Rhsim04G0087000 Rhododendron simsii HOM05D006942 ORTHO05D008737 1.3e-72 276.9 165 78.8
MELO3C026901.2 Cucumis melo HOM05D006942 ORTHO05D008737 1.7e-72 276.6 158 82.3
CsaV3_3G043400 Cucumis sativus L. HOM05D006942 ORTHO05D008737 1.7e-72 276.6 158 82.3
Lj2A357G77 Lonicera japonica HOM05D006942 ORTHO05D008737 2.2e-72 276.2 153 85.6
Eucgr.A02087 Eucalyptus grandis HOM05D006942 ORTHO05D008737 2.9e-72 275.8 165 78.8
BcaC04g22009 Brassica carinata HOM05D006942 ORTHO05D008737 5.0e-72 275.0 165 77.6
A09p19530 Brassica napus HOM05D006942 ORTHO05D008737 5.0e-72 275.0 165 77.6
C09p24900 Brassica napus HOM05D006942 ORTHO05D008737 5.0e-72 275.0 165 77.6
BolC9t55381H Brassica oleracea HOM05D006942 ORTHO05D008737 5.0e-72 275.0 165 77.6
SpUn0001_1050 Schrenkiella parvula HOM05D006942 ORTHO05D008737 5.0e-72 275.0 163 77.9
Cpa.g.sc51.94 Carica papaya HOM05D006942 ORTHO05D008737 8.5e-72 274.2 172 75.6
ClCG10G013230 Citrullus lanatus HOM05D006942 ORTHO05D008737 8.5e-72 274.2 158 81.6
Sed0013150 Sechium edule HOM05D006942 ORTHO05D008737 8.5e-72 274.2 158 81.6
Carub.0002s0962 Capsella rubella HOM05D006942 ORTHO05D008737 1.5e-71 273.5 165 77.0
PGR042G3330 Punica granatum HOM05D006942 ORTHO05D008737 1.9e-71 273.1 165 77.6
MSTRG.19939 Avicennia marina HOM05D006942 ORTHO05D008737 2.5e-71 272.7 165 77.6
Eucgr.K01480 Eucalyptus grandis HOM05D006942 ORTHO05D008737 2.5e-71 272.7 163 78.5
Gohir.A13G105500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 2.5e-71 272.7 165 77.6
Ciclev10021582m.g Citrus clementina HOM05D006942 ORTHO05D008737 3.2e-71 272.3 163 77.9
DCAR_019882 Daucus carota HOM05D006942 ORTHO05D008737 3.2e-71 272.3 158 79.1
AL1G64670 Arabidopsis lyrata HOM05D006942 ORTHO05D008737 4.2e-71 271.9 165 75.8
Gorai.007G287900 Gossypium raimondii HOM05D006942 ORTHO05D008737 4.2e-71 271.9 165 80.0
SGA_v2.0_scaffold50G18512 Striga asiatica HOM05D006942 ORTHO05D008737 7.2e-71 271.2 158 81.0
AT2G23840 Arabidopsis thaliana HOM05D006942 ORTHO05D008737 3.6e-70 268.9 163 75.5
Migut.J01895 Erythranthe guttata HOM05D006942 ORTHO05D008737 3.6e-70 268.9 165 77.6
HanXRQChr13g0398101 Helianthus annuus HOM05D006942 ORTHO05D008737 6.1e-70 268.1 161 79.5
PSO339G1210 Papaver somniferum HOM05D006942 ORTHO05D008737 1.0e-69 267.3 163 77.3
VMungo1383G0897 Vigna mungo HOM05D006942 ORTHO05D008737 1.4e-69 266.9 160 78.1
ATR0697G165 Amborella trichopoda HOM05D006942 ORTHO05D008737 2.3e-69 266.2 163 74.8
Cc00_g08890 Coffea canephora HOM05D006942 ORTHO05D008737 2.3e-69 266.2 165 76.4
CARHR028870 Cardamine hirsuta HOM05D006942 ORTHO05D008737 5.2e-69 265.0 160 76.9
DCAR_009675 Daucus carota HOM05D006942 ORTHO05D008737 6.8e-69 264.6 158 76.6
Lj1g0019871 Lotus japonicus HOM05D006942 ORTHO05D008737 6.8e-69 264.6 157 78.3
Sed0025081 Sechium edule HOM05D006942 ORTHO05D008737 6.8e-69 264.6 158 78.5
ECA233G4155 Erigeron canadensis HOM05D006942 ORTHO05D008737 8.8e-69 264.2 161 78.9
Thhalv10008350m.g Eutrema salsugineum HOM05D006942 ORTHO05D008737 8.8e-69 264.2 165 74.5
CANSAT78G1082 Cannabis sativa HOM05D006942 ORTHO05D008737 1.2e-68 263.8 157 79.6
Lalb_Chr24g0403081 Lupinus albus HOM05D006942 ORTHO05D008737 1.5e-68 263.5 157 77.7
Phvul.001G109600 Phaseolus vulgaris HOM05D006942 ORTHO05D008737 2.0e-68 263.1 160 76.9
Sabra19G0041400 Salix brachista HOM05D006942 ORTHO05D008737 2.0e-68 263.1 166 75.9
Peaxi162Scf00076g01036 Petunia axillaris HOM05D006942 ORTHO05D008737 5.7e-68 261.5 182 71.4
arahy.Tifrunner.gnm1.ann1.0W916P Arachis hypogaea HOM05D006942 ORTHO05D008737 7.5e-68 261.2 157 76.4
BcaB07g31088 Brassica carinata HOM05D006942 ORTHO05D008737 7.5e-68 261.2 158 75.3
Glyma.19G110300 Glycine max HOM05D006942 ORTHO05D008737 1.3e-67 260.4 160 76.2
Os07g0170200 Oryza sativa ssp. japonica HOM05D006942 ORTHO05D008737 1.3e-67 260.4 161 73.3
Lsat_1_v5_gn_6_36781 Lactuca sativa HOM05D006942 ORTHO05D008737 2.8e-67 259.2 154 79.2
Aqoxy2G00557 Aquilegia oxysepala HOM05D006942 ORTHO05D008737 3.7e-67 258.8 157 76.4
CDE10G0368 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 3.7e-67 258.8 160 76.2
Haze_19409 Corylus avellana HOM05D006942 ORTHO05D008737 4.8e-67 258.5 177 71.2
Glyma.16G042200 Glycine max HOM05D006942 ORTHO05D008737 8.3e-67 257.7 160 75.0
Medtr7g085420 Medicago truncatula HOM05D006942 ORTHO05D008737 2.0e-65 253.1 159 74.2
TPR.G5873 Trifolium pratense HOM05D006942 ORTHO05D008737 5.9e-65 251.5 166 72.3
HPP92_018642 Vanilla planifolia HOM05D006942 ORTHO05D008737 1.3e-64 250.4 157 73.9
Ca_08258_v3 Cicer arietinum L. HOM05D006942 ORTHO05D008737 2.9e-64 249.2 149 78.5
Psat3g089160 Pisum sativum HOM05D006942 ORTHO05D008737 5.0e-64 248.4 159 71.7
Lalb_Chr06g0173931 Lupinus albus HOM05D006942 ORTHO05D008737 1.9e-63 246.5 204 61.8
EL10Ac3g06808 Beta vulgaris HOM05D006942 ORTHO05D008737 4.0e-61 238.8 188 62.2
CDE06G2457 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 4.0e-61 238.8 163 71.2
AUR62032674 Chenopodium quinoa HOM05D006942 ORTHO05D008737 4.4e-60 235.3 159 69.8
PGR142G1268 Punica granatum HOM05D006942 ORTHO05D008737 8.3e-59 231.1 163 68.7
Actinidia38618 Actinidia chinensis HOM05D006942 ORTHO05D008737 1.8e-58 229.9 165 69.7
Gohir.D11G268200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 2.5e-55 219.5 129 82.2
AUR62032073 Chenopodium quinoa HOM05D006942 ORTHO05D008737 1.6e-49 200.3 159 60.4
Sc13g0007650 Simmondsia chinensis HOM05D006942 ORTHO05D008737 1.3e-48 197.2 123 74.0
CSS0046453 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 3.9e-48 195.7 157 63.1
Actinidia17307 Actinidia chinensis HOM05D006942 ORTHO05D008737 3.4e-44 182.6 209 50.2
Potri.019G033200 Populus trichocarpa HOM05D006942 ORTHO05D008737 4.9e-43 178.7 98 83.7
Pp3c4_7620 Physcomitrium patens HOM05D006942 ORTHO05D008737 7.0e-42 174.9 161 52.2
Mapoly0043s0076 Marchantia polymorpha HOM05D006942 ORTHO05D008737 1.6e-41 173.7 159 50.9
Pp3c12_13900 Physcomitrium patens HOM05D006942 ORTHO05D008737 1.6e-41 173.7 161 50.9
AagrBONN_evm.TU.Sc2ySwM_344.2088 Anthoceros agrestis HOM05D006942 ORTHO05D008737 6.6e-40 168.3 159 50.3
Manes.09G142700 Manihot esculenta HOM05D006942 ORTHO05D008737 7.3e-39 164.9 97 77.3
CBR_g603 Chara braunii HOM05D006942 ORTHO05D008737 2.1e-38 163.3 149 56.4
Gohir.A11G258200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 2.1e-38 163.3 98 80.6
SalBow2G1960 Salvia bowleyana HOM05D006942 ORTHO05D008737 1.8e-37 160.2 98 77.6
Oeu048436.1 Olea europaea HOM05D006942 ORTHO05D008737 3.1e-37 159.5 165 53.3
arahy.Tifrunner.gnm1.ann1.T4HPZA Arachis hypogaea HOM05D006942 ORTHO05D008737 1.2e-36 157.5 157 52.9
Duzib128G0620 Durio zibethinus HOM05D006942 ORTHO05D008737 2.6e-36 156.4 87 80.5
SMO364G0530 Selaginella moellendorffii HOM05D006942 ORTHO05D008737 2.2e-35 153.3 157 45.9
Hund24842 Selenicereus undatus HOM05D006942 ORTHO05D008737 3.0e-32 142.9 89 69.7
Nitab4.5_0000911g0030 Nicotiana tabacum HOM05D006942 ORTHO05D008737 8.6e-32 141.4 95 71.6
Ah.04g153240 Amaranthus hybridus HOM05D000653 ORTHO05D003117 1.9e-31 140.2 157 48.4
unitig_85.g27430 Utricularia gibba HOM05D006942 ORTHO05D008737 5.2e-29 132.1 109 60.6
PRCOL_00006758 Prasinoderma coloniale HOM05D006942 ORTHO05D008737 1.2e-25 120.9 160 39.4
Cre04.g217903 Chlamydomonas reinhardtii HOM05D006942 ORTHO05D008737 5.6e-23 112.1 147 41.5
Pp3s30_1160 Physcomitrium patens HOM05D006942 ORTHO05D317230 7.4e-07 58.5 62 40.3
SEGI_36650 Sequoiadendron giganteum HOM05D006942 ORTHO05D008737 4.8e-06 55.8 37 64.9
CSS0026826 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 6.2e-06 55.5 29 79.3


User provided reference genes

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