Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 0.0e+00 1093.2 541 100.0
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 9.2e-253 876.7 542 81.0
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.3e-248 862.1 542 79.5
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 9.8e-247 856.7 542 79.9
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 9.8e-247 856.7 544 79.6
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 9.8e-247 856.7 542 79.9
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 1.1e-245 853.2 539 79.8
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 1.4e-216 756.5 535 73.1
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 5.2e-216 754.6 506 74.5
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.7e-212 742.3 563 70.2
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 1.6e-209 733.0 543 68.3
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 8.1e-209 730.7 518 70.3
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 1.2e-207 726.9 549 66.7
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 8.4e-206 720.7 520 68.7
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 2.4e-205 719.2 541 66.7
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 1.3e-203 713.4 509 69.7
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 1.9e-202 709.5 535 66.0
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 3.3e-202 708.8 508 70.3
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 1.3e-201 706.8 514 68.3
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 1.6e-201 706.4 504 71.2
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 4.8e-201 704.9 509 68.8
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 8.1e-201 704.1 532 67.1
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 1.1e-200 703.7 546 66.5
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 1.4e-200 703.4 512 68.2
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 5.3e-200 701.4 508 69.3
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 4.5e-199 698.4 530 66.4
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 7.6e-199 697.6 531 66.5
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 9.9e-199 697.2 511 68.9
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 1.3e-198 696.8 510 68.6
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 2.9e-198 695.7 538 65.4
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 1.1e-197 693.7 508 67.9
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 7.1e-197 691.0 514 67.9
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 1.2e-196 690.3 519 66.1
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 1.6e-196 689.9 517 67.1
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 2.7e-196 689.1 510 67.5
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 5.1e-195 684.9 535 64.7
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 8.7e-195 684.1 500 68.6
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 2.5e-194 682.6 444 75.7
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 3.3e-194 682.2 541 63.6
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 5.6e-194 681.4 518 66.6
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 1.3e-193 680.2 529 64.5
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 1.3e-193 680.2 515 67.2
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 4.8e-193 678.3 513 65.9
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 8.1e-193 677.6 533 64.2
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 8.1e-193 677.6 513 65.9
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 1.8e-192 676.4 521 66.8
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 2.4e-192 676.0 528 64.4
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 3.1e-192 675.6 543 62.1
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 1.2e-191 673.7 542 62.0
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.5e-191 673.3 506 66.2
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 2.6e-191 672.5 543 63.2
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 3.4e-191 672.2 541 61.9
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 5.8e-191 671.4 528 64.4
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 6.5e-190 667.9 538 61.7
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 5.5e-189 664.8 514 65.2
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 7.1e-189 664.5 546 61.5
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 6.0e-188 661.4 529 63.1
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 1.3e-187 660.2 545 61.5
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 6.7e-187 657.9 510 63.5
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 1.5e-186 656.8 502 65.7
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 3.3e-186 655.6 533 62.9
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 5.7e-186 654.8 460 68.9
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 5.7e-186 654.8 457 71.3
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 9.6e-186 654.1 546 61.9
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 9.6e-186 654.1 521 63.7
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 6.3e-185 651.4 513 63.5
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 1.4e-184 650.2 546 61.4
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.3e-182 643.7 506 64.0
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.7e-182 643.3 506 64.0
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 5.0e-182 641.7 512 63.1
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 4.2e-181 638.6 535 60.7
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 5.5e-181 638.3 543 61.7
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 7.2e-181 637.9 538 60.2
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 1.2e-180 637.1 546 60.8
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 3.9e-179 632.1 404 77.5
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 6.7e-179 631.3 444 69.8
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.1e-176 624.0 517 61.5
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 1.5e-175 620.2 504 61.7
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 1.0e-174 617.5 521 59.5
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 1.9e-173 613.2 505 62.6
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 3.7e-169 599.0 389 76.6
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 3.8e-166 589.0 500 59.2
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.3e-162 575.9 607 52.9
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 1.8e-160 570.1 438 64.4
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 3.1e-160 569.3 526 55.1
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.1e-160 569.3 395 71.4
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.1e-160 569.3 395 71.4
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 5.0e-158 562.0 389 71.5
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 8.5e-158 561.2 390 69.7
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 1.1e-157 560.8 390 70.8
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 3.2e-157 559.3 515 57.3
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 5.5e-157 558.5 425 63.8
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.2e-150 536.6 417 63.8
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 3.8e-150 535.8 528 54.4
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.4e-147 527.3 400 65.2
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 3.5e-143 512.7 504 55.0
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 2.9e-142 509.6 497 52.7
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.5e-141 507.3 480 54.2
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 1.4e-139 500.7 499 54.9
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 9.2e-136 488.0 333 71.8
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 4.5e-135 485.7 354 67.2
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 1.9e-133 480.3 487 50.9
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 4.7e-132 475.7 350 66.6
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 1.7e-129 467.2 345 65.8
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 1.4e-128 464.2 405 59.3
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 7.8e-127 458.4 501 48.1
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 8.6e-126 454.9 490 49.4
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 6.8e-123 445.3 306 67.6
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 2.5e-117 426.8 295 72.9
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 9.5e-117 424.9 381 55.4
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 6.8e-115 418.7 363 58.4
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.7e-111 406.8 507 43.8
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 1.5e-106 391.0 257 72.8
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 1.7e-94 350.9 304 56.9
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.7e-94 350.9 511 42.3
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 2.4e-91 340.5 537 36.7
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 4.6e-87 326.2 276 56.9
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.3e-81 308.1 388 45.4
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 6.4e-81 305.8 249 62.2
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 2.4e-75 287.3 197 67.5
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 7.4e-69 265.8 524 34.9
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 4.8e-68 263.1 163 79.1
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 4.8e-60 236.5 152 79.6
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 1.6e-55 221.5 133 79.7
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.3e-52 211.8 195 49.7
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 7.4e-45 186.0 139 71.2
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.0e-34 151.4 126 63.5
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.8e-33 147.1 126 61.1
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 9.4e-32 142.5 148 52.0
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 2.1e-31 141.4 123 57.7
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 2.3e-30 137.9 124 58.9
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 8.9e-22 109.4 110 52.7
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 2.0e-21 108.2 112 50.9
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 2.4e-19 101.3 81 61.7
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 4.3e-16 90.5 115 45.2
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 8.0e-15 86.3 90 53.3
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 4.4e-13 80.5 76 52.6


User provided reference genes

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