Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 1.0e-21 109.0 55 100.0
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 1.7e-19 101.7 53 96.2
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 1.7e-19 101.7 53 96.2
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 2.2e-19 101.3 54 90.7
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 4.1e-18 97.1 51 94.1
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 2.7e-17 94.4 75 96.0
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.7e-17 94.4 75 96.0
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.7e-17 94.4 75 96.0
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.8e-17 92.8 75 69.3
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.0e-16 92.4 75 94.7
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 3.0e-16 90.9 76 59.2
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 5.0e-16 90.1 55 80.0
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 1.5e-15 88.6 76 55.3
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 3.3e-15 87.4 76 56.6
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 3.3e-15 87.4 76 56.6
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 3.3e-15 87.4 76 56.6
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 4.3e-15 87.0 75 86.7
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 4.3e-15 87.0 53 77.4
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 1.6e-14 85.1 75 57.3
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 2.8e-14 84.3 76 84.2
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 4.7e-14 83.6 76 53.9
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 6.2e-14 83.2 76 52.6
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 6.2e-14 83.2 76 52.6
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 8.0e-14 82.8 76 53.9
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 8.0e-14 82.8 76 77.6
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 1.0e-13 82.4 76 52.6
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 1.8e-13 81.6 75 54.7
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 2.3e-13 81.3 46 76.1
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 2.3e-13 81.3 46 76.1
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 2.3e-13 81.3 46 76.1
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 2.3e-13 81.3 51 70.6
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 3.1e-13 80.9 76 53.9
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 3.1e-13 80.9 76 53.9
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 3.1e-13 80.9 76 53.9
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 3.1e-13 80.9 76 53.9
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 3.1e-13 80.9 75 53.3
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 4.0e-13 80.5 74 54.1
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 4.0e-13 80.5 76 55.3
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 5.2e-13 80.1 76 85.5
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 5.2e-13 80.1 76 85.5
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 6.8e-13 79.7 75 88.0
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 8.9e-13 79.3 41 87.8
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 1.2e-12 79.0 74 54.1
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 1.5e-12 78.6 75 53.3
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 1.5e-12 78.6 76 81.6
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 2.0e-12 78.2 51 68.6
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 2.6e-12 77.8 76 82.9
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 3.4e-12 77.4 74 81.1
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 3.4e-12 77.4 76 84.2
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 3.4e-12 77.4 76 84.2
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 3.4e-12 77.4 76 84.2
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 4.4e-12 77.0 76 82.9
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 4.4e-12 77.0 76 48.7
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 4.4e-12 77.0 74 52.7
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 5.8e-12 76.6 76 48.7
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 5.8e-12 76.6 76 50.0
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 9.8e-12 75.9 46 71.7
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 1.3e-11 75.5 51 68.6
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 1.7e-11 75.1 74 47.3
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 1.7e-11 75.1 76 51.3
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 1.7e-11 75.1 48 68.8
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 2.9e-11 74.3 40 82.5
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 3.7e-11 73.9 74 48.6
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 3.7e-11 73.9 75 82.7
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 4.9e-11 73.6 40 82.5
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 6.4e-11 73.2 76 44.7
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 8.3e-11 72.8 76 47.4
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 1.4e-10 72.0 73 47.9
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 1.4e-10 72.0 76 77.6
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 1.4e-10 72.0 50 72.0
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 1.9e-10 71.6 76 47.4
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 2.4e-10 71.2 51 62.7
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 3.2e-10 70.9 76 47.4
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 5.4e-10 70.1 74 79.7
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 5.4e-10 70.1 76 46.1
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 5.4e-10 70.1 74 74.3
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 7.0e-10 69.7 76 46.1
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 1.2e-09 68.9 74 73.0
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 1.2e-09 68.9 76 47.4
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 1.2e-09 68.9 51 60.8
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 2.0e-09 68.2 50 66.0
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 2.7e-09 67.8 41 70.7
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 6.0e-09 66.6 40 75.0
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.1e-07 62.4 41 65.9
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 1.1e-07 62.4 76 42.1
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.5e-07 62.0 41 65.9
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 1.9e-07 61.6 76 38.2
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 9.5e-07 59.3 40 60.0
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 9.5e-07 59.3 37 70.3
Glyma.19G248500 Glycine max HOM05D007620 ORTHO05D009568 4.7e-06 57.0 50 52.0
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 6.2e-06 56.6 34 70.6
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 8.1e-06 56.2 74 37.8


User provided reference genes

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