Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 3.7e-255 884.4 455 100.0
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 3.4e-208 728.4 457 81.6
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 2.5e-195 685.6 459 76.3
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 7.3e-195 684.1 461 75.7
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.4e-193 679.9 460 75.4
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.6e-192 675.6 461 74.6
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.5e-181 638.6 387 80.4
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 1.9e-179 632.9 464 70.9
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 1.1e-174 617.1 459 67.5
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 1.1e-174 617.1 463 68.9
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 9.3e-174 614.0 455 69.5
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 9.3e-174 614.0 463 68.5
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 1.3e-172 610.1 460 66.7
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 3.1e-169 599.0 417 71.2
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 4.0e-169 598.6 461 68.3
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 9.0e-169 597.4 471 67.3
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 2.6e-168 595.9 463 65.4
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 2.6e-168 595.9 471 67.3
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 7.6e-168 594.3 456 66.9
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 7.6e-168 594.3 441 68.3
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 2.5e-166 589.3 463 67.0
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.3e-164 583.6 459 68.2
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.9e-164 582.0 459 68.0
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 3.9e-164 582.0 426 69.0
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 1.5e-163 580.1 424 69.1
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 1.5e-163 580.1 461 63.6
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 9.7e-163 577.4 456 65.6
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 9.0e-161 570.9 460 64.8
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 5.9e-160 568.2 407 69.3
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 1.3e-159 567.0 456 63.4
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 5.0e-159 565.1 392 70.7
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 6.5e-159 564.7 443 64.8
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 8.5e-159 564.3 413 67.6
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 4.2e-158 562.0 462 62.1
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 1.6e-157 560.1 423 66.7
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 1.6e-157 560.1 417 68.6
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 3.6e-157 558.9 434 65.2
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 4.3e-155 552.0 412 68.2
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 9.7e-155 550.8 412 67.5
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 3.7e-154 548.9 328 81.4
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 1.4e-153 547.0 416 66.3
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 2.1e-149 533.1 457 60.8
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 4.7e-149 531.9 415 64.8
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 4.1e-145 518.8 420 62.6
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 1.0e-143 514.2 461 57.7
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 1.0e-143 514.2 394 64.5
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 1.7e-143 513.5 394 64.5
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 5.0e-143 511.9 438 63.2
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 1.9e-142 510.0 446 59.6
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.6e-141 506.9 460 59.1
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 2.7e-141 506.1 435 59.8
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 1.4e-140 503.8 420 62.6
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.8e-140 503.4 460 58.7
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 3.3e-139 499.2 432 63.0
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 9.7e-139 497.7 464 57.8
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 9.7e-139 497.7 427 63.0
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 3.7e-138 495.7 460 58.0
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 1.1e-137 494.2 465 57.0
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 2.4e-137 493.0 395 63.3
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 2.4e-137 493.0 474 55.3
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 3.1e-137 492.7 465 56.8
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 4.1e-137 492.3 394 61.2
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 9.1e-137 491.1 465 56.8
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 9.1e-137 491.1 465 57.0
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 9.1e-137 491.1 465 56.8
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 7.7e-136 488.0 462 57.4
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 5.0e-135 485.3 461 56.8
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 6.5e-135 485.0 471 55.2
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 2.5e-134 483.0 459 56.0
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.2e-133 480.7 443 57.1
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 8.0e-133 478.0 427 59.5
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.4e-132 477.2 468 53.6
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.8e-132 476.9 458 55.2
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 5.2e-132 475.3 467 54.4
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 5.2e-132 475.3 433 58.0
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 1.2e-131 474.2 461 54.0
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 2.0e-131 473.4 458 55.2
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 1.3e-130 470.7 408 58.8
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.7e-130 470.3 429 56.4
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 2.8e-130 469.5 394 59.6
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 4.8e-130 468.8 476 52.1
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 5.3e-129 465.3 457 54.7
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 5.9e-128 461.8 456 54.8
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 2.9e-127 459.5 462 54.1
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 1.1e-126 457.6 456 53.7
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 2.5e-126 456.4 397 58.7
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 8.0e-125 451.4 457 54.0
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 8.0e-125 451.4 457 54.0
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 3.4e-123 446.0 343 61.5
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 5.7e-123 445.3 467 53.3
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 7.5e-123 444.9 409 55.5
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.6e-120 437.2 474 50.0
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 2.3e-119 433.3 442 54.5
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 1.5e-118 430.6 348 64.9
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 9.5e-118 427.9 421 55.6
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.2e-117 427.6 471 49.3
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 1.8e-116 423.7 414 52.9
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 3.4e-115 419.5 405 55.3
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 2.4e-113 413.3 379 56.2
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 1.2e-109 401.0 426 53.3
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 4.0e-108 396.0 347 57.1
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 4.4e-107 392.5 227 84.6
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 6.4e-106 388.7 313 65.8
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 4.1e-105 386.0 434 50.2
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 5.0e-103 379.0 371 52.8
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 3.4e-99 366.3 338 59.2
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 9.2e-97 358.2 459 46.4
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 2.1e-93 347.1 337 57.3
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 8.9e-92 341.7 258 67.1
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 8.1e-85 318.5 411 44.0
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 2.4e-84 317.0 343 51.9
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 2.8e-77 293.5 412 42.5
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 9.0e-76 288.5 398 43.5
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 7.1e-73 278.9 265 58.9
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 2.3e-71 273.9 436 44.5
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 5.6e-70 269.2 238 61.3
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 2.1e-64 250.8 238 55.5
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 3.8e-58 229.9 400 37.2
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 2.5e-57 227.3 397 37.3
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 6.0e-56 222.6 405 37.0
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 5.1e-55 219.5 416 35.3
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 8.2e-29 132.5 108 61.1
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 1.3e-26 125.2 404 29.0
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 8.0e-24 115.9 257 35.4
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 4.5e-19 100.1 169 36.7
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.3e-18 98.6 70 64.3
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 3.8e-18 97.1 193 35.2
PRCOL_00003529 Prasinoderma coloniale HOM05D006219 ORTHO05D007562 4.2e-17 93.6 395 25.8
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 2.3e-15 87.8 421 24.5
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 2.2e-13 81.3 159 35.2
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 4.1e-12 77.0 82 48.8


User provided reference genes

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