Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 2.3e-219 765.4 422 100.0
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 2.2e-161 572.8 422 77.7
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 8.4e-153 544.3 439 70.4
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.3e-150 537.0 439 70.8
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.0e-150 535.8 439 69.0
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.1e-149 533.9 439 70.6
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.9e-149 533.1 439 69.0
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 1.4e-144 516.9 423 69.7
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 5.5e-144 515.0 422 68.5
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 1.5e-141 506.9 423 66.7
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 1.6e-140 503.4 361 73.1
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 6.2e-140 501.5 423 65.5
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 1.4e-139 500.4 422 66.1
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 9.0e-139 497.7 423 65.5
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 2.6e-138 496.1 420 68.6
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 5.8e-138 495.0 426 67.1
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 7.6e-138 494.6 428 66.1
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 7.6e-138 494.6 422 66.8
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 8.4e-137 491.1 430 64.9
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 1.1e-136 490.7 431 64.0
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.2e-135 487.3 439 67.0
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 1.2e-135 487.3 359 72.1
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 4.6e-135 485.3 431 64.7
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 7.9e-135 484.6 439 66.7
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 1.0e-134 484.2 355 70.7
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 2.3e-134 483.0 439 66.7
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 3.0e-134 482.6 424 63.9
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 3.9e-134 482.3 424 64.9
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 6.7e-134 481.5 361 69.8
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 9.7e-133 477.6 423 65.7
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 1.3e-132 477.2 426 62.4
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 3.7e-132 475.7 421 67.7
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 6.3e-132 474.9 424 64.9
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 6.3e-132 474.9 535 54.0
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 6.3e-132 474.9 425 62.1
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 1.1e-131 474.2 424 62.3
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 9.0e-131 471.1 424 62.0
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 5.9e-130 468.4 422 62.3
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 2.9e-129 466.1 424 62.5
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 2.5e-128 463.0 432 64.1
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 5.5e-128 461.8 428 60.5
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 9.3e-128 461.1 362 68.2
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 2.7e-127 459.5 364 67.9
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 3.6e-127 459.1 443 63.4
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 7.9e-127 458.0 423 60.0
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 3.0e-126 456.1 439 61.7
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 3.9e-126 455.7 358 68.7
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 5.1e-126 455.3 422 62.1
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 5.1e-126 455.3 423 59.1
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 1.1e-125 454.1 423 61.0
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 1.5e-125 453.8 423 61.9
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 4.3e-125 452.2 429 60.8
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 7.4e-125 451.4 424 63.9
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 7.4e-125 451.4 439 58.3
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 7.4e-125 451.4 425 62.4
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 9.7e-125 451.1 420 60.7
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 1.7e-124 450.3 429 61.1
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 2.2e-124 449.9 423 60.0
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 1.4e-123 447.2 424 59.9
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 6.9e-123 444.9 423 59.8
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 2.6e-122 443.0 367 65.7
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 7.7e-122 441.4 422 60.9
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 1.0e-121 441.0 447 57.0
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 6.5e-121 438.3 423 60.5
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 1.4e-120 437.2 443 57.6
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 1.4e-120 437.2 361 65.7
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 1.9e-120 436.8 362 65.5
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 4.2e-120 435.6 448 58.5
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 5.5e-120 435.3 455 56.9
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 5.5e-120 435.3 364 65.4
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 9.4e-120 434.5 426 60.1
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 3.6e-119 432.6 447 56.6
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 6.1e-119 431.8 449 55.9
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 8.8e-118 427.9 452 54.9
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 3.3e-117 426.0 451 56.8
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 7.4e-117 424.9 349 67.0
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 1.3e-116 424.1 422 56.4
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 1.7e-116 423.7 347 66.6
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 2.2e-116 423.3 453 55.4
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 2.2e-116 423.3 336 67.6
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 3.7e-116 422.5 423 58.4
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 8.2e-116 421.4 359 64.3
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 1.1e-115 421.0 418 58.6
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 1.4e-115 420.6 422 56.9
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 4.1e-115 419.1 422 57.8
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 7.0e-115 418.3 422 59.2
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 1.0e-113 414.5 430 57.4
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 5.5e-112 408.7 423 57.7
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 1.2e-111 407.5 456 51.8
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 1.4e-110 404.1 427 55.5
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 1.7e-108 397.1 426 56.3
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 8.2e-108 394.8 446 52.5
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 1.1e-107 394.4 320 65.6
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 1.1e-107 394.4 446 52.5
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 1.1e-107 394.4 270 77.8
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 3.5e-106 389.4 423 53.2
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 1.4e-99 367.5 423 53.7
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 5.2e-94 349.0 378 52.9
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 7.5e-93 345.1 341 59.5
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 2.2e-92 343.6 354 54.5
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 9.1e-91 338.2 327 57.2
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 3.5e-90 336.3 337 55.5
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 1.2e-87 327.8 315 58.7
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 3.6e-79 299.7 335 56.1
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 6.4e-76 288.9 421 42.5
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.9e-75 287.3 270 57.0
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 3.0e-73 280.0 368 44.6
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 5.4e-67 259.2 335 45.4
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 6.6e-65 252.3 316 49.1
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 5.8e-61 239.2 223 57.0
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 1.4e-59 234.6 375 38.9
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 2.4e-46 190.7 129 75.2
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 4.2e-43 179.9 140 67.9
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 7.1e-43 179.1 220 48.2
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.3e-33 148.3 88 79.5
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 2.5e-24 117.5 353 27.8
MD04G1228300 Malus domestica HOM05D006391 ORTHO05D007767 4.3e-24 116.7 141 60.3
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 2.7e-18 97.4 86 60.5
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 8.2e-15 85.9 145 36.6
PRCOL_00004538 Prasinoderma coloniale HOM05D006391 ORTHO05D007767 2.2e-12 77.8 326 25.8
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 2.1e-10 71.2 66 56.1
BolC3t13192H Brassica oleracea HOM05D006391 ORTHO05D007767 3.0e-09 67.4 190 28.9
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 3.0e-09 67.4 46 67.4
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 2.0e-08 64.7 81 43.2
SHI23188 Sapria himalayana HOM05D006391 ORTHO05D007767 1.8e-06 58.2 124 38.7


User provided reference genes

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