Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G347400 Prunus persica HOM05D006721 ORTHO05D000476 1.7e-58 229.2 121 100.0
MD12G1244800 Malus domestica HOM05D006721 ORTHO05D000476 1.5e-49 199.5 121 87.6
FAN05G5208 Fragaria x ananassa HOM05D006721 ORTHO05D000476 2.2e-42 175.6 122 80.3
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 2.2e-42 175.6 122 80.3
FvH4_6g02371 Fragaria vesca HOM05D006721 ORTHO05D000476 1.5e-41 172.9 119 80.7
RcHm_v2.0_Chr3g0450141 Rosa chinensis HOM05D006721 ORTHO05D000476 5.5e-41 171.0 124 79.8
Potri.019G014100 Populus trichocarpa HOM05D006721 ORTHO05D000476 1.4e-39 166.4 119 77.3
FAN14G4094 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.8e-39 166.0 118 79.7
FAN02G4370 Fragaria x ananassa HOM05D006721 ORTHO05D000476 5.2e-39 164.5 119 78.2
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.5e-38 162.9 116 79.3
Sabra19G0016300 Salix brachista HOM05D006721 ORTHO05D000476 2.0e-38 162.5 119 74.8
Sabra19G0026800 Salix brachista HOM05D006721 ORTHO05D000476 2.0e-38 162.5 119 74.8
Ciclev10022930m.g Citrus clementina HOM05D006721 ORTHO05D000476 3.4e-38 161.8 119 74.8
Manes.09G149900 Manihot esculenta HOM05D006721 ORTHO05D000476 5.7e-38 161.0 95 86.3
QL03p032184 Quercus lobata HOM05D006721 ORTHO05D000476 5.7e-38 161.0 120 74.2
QL03p032281 Quercus lobata HOM05D006721 ORTHO05D000476 5.7e-38 161.0 120 74.2
Haze_04466 Corylus avellana HOM05D006721 ORTHO05D000476 1.7e-37 159.5 121 73.6
Sed0018278 Sechium edule HOM05D006721 ORTHO05D000476 2.8e-37 158.7 120 70.8
QL01p041965 Quercus lobata HOM05D006721 ORTHO05D000476 4.9e-37 157.9 120 73.3
CiPaw.07G077700 Carya illinoinensis HOM05D006721 ORTHO05D000476 6.3e-37 157.5 117 74.4
PGR142G1199 Punica granatum HOM05D006721 ORTHO05D000476 8.3e-37 157.1 121 71.1
COL.COLO4_15417 Corchorus olitorius HOM05D006721 ORTHO05D000476 2.4e-36 155.6 118 71.2
Glyma.03G251900 Glycine max HOM05D006721 ORTHO05D000476 3.1e-36 155.2 118 70.3
Phvul.006G106600 Phaseolus vulgaris HOM05D006721 ORTHO05D000476 3.1e-36 155.2 118 70.3
Thecc.05G276800 Theobroma cacao HOM05D006721 ORTHO05D000476 3.1e-36 155.2 119 73.1
Eucgr.B02129 Eucalyptus grandis HOM05D006721 ORTHO05D000476 5.4e-36 154.5 114 72.8
Aa31LG8G12480 Aethionema arabicum HOM05D006721 ORTHO05D000476 9.2e-36 153.7 119 72.3
Gohir.A13G168900 Gossypium hirsutum HOM05D006721 ORTHO05D000476 9.2e-36 153.7 119 68.1
Gohir.D13G174300 Gossypium hirsutum HOM05D006721 ORTHO05D000476 9.2e-36 153.7 119 68.1
Gorai.013G186500 Gossypium raimondii HOM05D006721 ORTHO05D000476 9.2e-36 153.7 119 68.1
Medtr7g116300 Medicago truncatula HOM05D006721 ORTHO05D000476 9.2e-36 153.7 115 71.3
Atru.chr2.886 Acer truncatum HOM05D006721 ORTHO05D000476 1.2e-35 153.3 113 73.5
THA.LOC104808031 Tarenaya hassleriana HOM05D006721 ORTHO05D000476 1.6e-35 152.9 115 73.0
Carub.0003s2825 Capsella rubella HOM05D006721 ORTHO05D000476 2.0e-35 152.5 117 71.8
Thhalv10023143m.g Eutrema salsugineum HOM05D006721 ORTHO05D000476 2.0e-35 152.5 113 71.7
Lj1g0023872 Lotus japonicus HOM05D006721 ORTHO05D000476 2.0e-35 152.5 118 71.2
Sp3g27300 Schrenkiella parvula HOM05D006721 ORTHO05D000476 2.0e-35 152.5 119 69.7
CARHR104660 Cardamine hirsuta HOM05D006721 ORTHO05D000476 2.7e-35 152.1 119 68.9
Lalb_Chr04g0262001 Lupinus albus HOM05D006721 ORTHO05D000476 2.7e-35 152.1 118 69.5
GSVIVG01036217001 Vitis vinifera HOM05D006721 ORTHO05D000476 2.7e-35 152.1 114 72.8
TWI56G0396 Tripterygium wilfordii HOM05D006721 ORTHO05D000476 3.5e-35 151.8 115 69.6
AT2G14045 Arabidopsis thaliana HOM05D006721 ORTHO05D000476 4.5e-35 151.4 117 70.9
CsaV3_2G003760 Cucumis sativus L. HOM05D006721 ORTHO05D000476 4.5e-35 151.4 120 68.3
BraA03t13647Z Brassica rapa HOM05D006721 ORTHO05D000476 5.9e-35 151.0 119 68.9
Psat3g006080 Pisum sativum HOM05D006721 ORTHO05D000476 1.3e-34 149.8 115 69.6
TAR365G0041 Trochodendron aralioides HOM05D006721 ORTHO05D000476 2.3e-34 149.1 115 71.3
Dinv14631 Davidia involucrata HOM05D006721 ORTHO05D000476 2.9e-34 148.7 114 70.2
HanXRQChr11g0322821 Helianthus annuus HOM05D006721 ORTHO05D000476 5.0e-34 147.9 115 71.3
Aqoxy2G03596 Aquilegia oxysepala HOM05D006721 ORTHO05D000476 8.6e-34 147.1 112 71.4
BcaC01g03109 Brassica carinata HOM05D006721 ORTHO05D000476 1.5e-33 146.4 112 74.1
BolC3t17881H Brassica oleracea HOM05D006721 ORTHO05D000476 1.5e-33 146.4 112 74.1
Migut.F00814 Erythranthe guttata HOM05D006721 ORTHO05D000476 1.5e-33 146.4 115 71.3
Sopen04g004980 Solanum pennellii HOM05D006721 ORTHO05D000476 1.5e-33 146.4 108 74.1
TPR.G6950 Trifolium pratense HOM05D006721 ORTHO05D000476 1.5e-33 146.4 115 67.8
EL10Ac4g09049 Beta vulgaris HOM05D006721 ORTHO05D000476 1.9e-33 146.0 101 73.3
PGSC0003DMG400025428 Solanum tuberosum HOM05D006721 ORTHO05D000476 1.9e-33 146.0 108 74.1
Ah.04g163750 Amaranthus hybridus HOM05D006721 ORTHO05D000476 4.3e-33 144.8 103 73.8
Cpa.g.sc162.11 Carica papaya HOM05D006721 ORTHO05D000476 5.6e-33 144.4 115 67.8
Lsat_1_v5_gn_2_107641 Lactuca sativa HOM05D006721 ORTHO05D000476 5.6e-33 144.4 106 70.8
HPP92_000759 Vanilla planifolia HOM05D006721 ORTHO05D000476 5.6e-33 144.4 106 70.8
Dinv18276 Davidia involucrata HOM05D006721 ORTHO05D000476 7.3e-33 144.1 90 81.1
A03p45120 Brassica napus HOM05D006721 ORTHO05D000476 9.5e-33 143.7 114 68.4
Cfa006323 Carpinus fangiana HOM05D006721 ORTHO05D000476 9.5e-33 143.7 90 84.4
Actinidia38949 Actinidia chinensis HOM05D006721 ORTHO05D000476 1.2e-32 143.3 108 69.4
CAN.G186.72 Capsicum annuum HOM05D006721 ORTHO05D000476 1.2e-32 143.3 108 73.1
Nitab4.5_0000930g0080 Nicotiana tabacum HOM05D006721 ORTHO05D000476 1.6e-32 142.9 112 71.4
Hund06940 Selenicereus undatus HOM05D006721 ORTHO05D000476 1.6e-32 142.9 112 67.0
CANSAT54G3036 Cannabis sativa HOM05D006721 ORTHO05D000476 2.1e-32 142.5 123 62.6
AUR62001066 Chenopodium quinoa HOM05D006721 ORTHO05D000476 2.1e-32 142.5 116 66.4
ECA238G3797 Erigeron canadensis HOM05D006721 ORTHO05D000476 2.1e-32 142.5 112 69.6
SGA_v2.0_scaffold90G27702 Striga asiatica HOM05D006721 ORTHO05D000476 2.1e-32 142.5 110 69.1
Peaxi162Scf00135g00914 Petunia axillaris HOM05D006721 ORTHO05D000476 2.8e-32 142.1 114 71.1
AL3G45710 Arabidopsis lyrata HOM05D006721 ORTHO05D000476 3.6e-32 141.7 128 64.1
Actinidia34741 Actinidia chinensis HOM05D006721 ORTHO05D000476 4.7e-32 141.4 109 69.7
Oeu058331.1 Olea europaea HOM05D006721 ORTHO05D000476 4.7e-32 141.4 109 69.7
Gorai.008G193300 Gossypium raimondii HOM05D006721 ORTHO05D000476 6.1e-32 141.0 113 66.4
Nn1g02669 Nelumbo nucifera HOM05D006721 ORTHO05D000476 1.0e-31 140.2 107 69.2
vmacro10349 Vaccinium macrocarpon HOM05D006721 ORTHO05D000476 1.0e-31 140.2 113 67.3
Cc02_g09090 Coffea canephora HOM05D006721 ORTHO05D000476 1.4e-31 139.8 102 69.6
AUR62004887 Chenopodium quinoa HOM05D006721 ORTHO05D000476 1.8e-31 139.4 102 69.6
MBI19_g37090_MAGBIO Magnolia biondii HOM05D006721 ORTHO05D000476 2.3e-31 139.0 112 66.1
Nitab4.5_0002651g0060 Nicotiana tabacum HOM05D006721 ORTHO05D000476 2.3e-31 139.0 123 65.9
C03p55970 Brassica napus HOM05D006721 ORTHO05D000476 3.0e-31 138.7 107 73.8
CSS0047325 Camellia sinensis var. sinensis HOM05D006721 ORTHO05D000476 3.0e-31 138.7 89 80.9
Gohir.D12G180151 Gossypium hirsutum HOM05D006721 ORTHO05D000476 6.8e-31 137.5 113 66.4
Os07g0185800 Oryza sativa ssp. japonica HOM05D006721 ORTHO05D000476 4.4e-30 134.8 90 74.4
PSO210G7245 Papaver somniferum HOM05D006721 ORTHO05D000476 5.7e-30 134.4 114 66.7
Sc15g0002500 Simmondsia chinensis HOM05D006721 ORTHO05D000476 7.5e-30 134.0 82 81.7
Ca_09468_v3 Cicer arietinum L. HOM05D006721 ORTHO05D000476 9.8e-30 133.7 115 66.1
PSO832G0589 Papaver somniferum HOM05D006721 ORTHO05D000476 9.8e-30 133.7 114 66.7
MSTRG.9005 Avicennia marina HOM05D006721 ORTHO05D000476 2.9e-29 132.1 111 64.0
ATR0665G282 Amborella trichopoda HOM05D006721 ORTHO05D000476 6.4e-29 131.0 95 70.5
Zm00001eb301780 Zea mays HOM05D006721 ORTHO05D000476 8.3e-29 130.6 88 73.9
CDE06G1546 Ceratophyllum demersum HOM05D006721 ORTHO05D000476 1.8e-28 129.4 90 72.2
GSVIVG01014622001 Vitis vinifera HOM05D006721 ORTHO05D000476 5.4e-28 127.9 81 79.0
GSVIVG01015127001 Vitis vinifera HOM05D006721 ORTHO05D000476 1.6e-27 126.3 82 79.3
Duzib128G0372 Durio zibethinus HOM05D006721 ORTHO05D000476 1.9e-25 119.4 119 63.0
Rhsim09G0138600 Rhododendron simsii HOM05D006721 ORTHO05D000476 7.3e-25 117.5 151 48.3
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 3.4e-22 108.6 109 57.8
Pp3c7_11510 Physcomitrium patens HOM05D006721 ORTHO05D000476 6.4e-21 104.4 85 57.6
SMO367G0192 Selaginella moellendorffii HOM05D001348 ORTHO05D002788 6.4e-21 104.4 90 60.0
Mapoly0013s0055 Marchantia polymorpha HOM05D006721 ORTHO05D000476 1.1e-20 103.6 84 60.7
BraA09t38027Z Brassica rapa HOM05D006721 ORTHO05D000476 2.7e-19 99.0 82 65.9
BraA10t43135Z Brassica rapa HOM05D006721 ORTHO05D000476 2.7e-19 99.0 82 65.9
A07p07050 Brassica napus HOM05D006721 ORTHO05D000476 7.8e-19 97.4 79 67.1
BraA06t26268Z Brassica rapa HOM05D006721 ORTHO05D000476 7.8e-19 97.4 83 66.3
arahy.Tifrunner.gnm1.ann1.DA1MAK Arachis hypogaea HOM05D006721 ORTHO05D000476 1.3e-18 96.7 88 59.1
arahy.Tifrunner.gnm1.ann1.P0L55B Arachis hypogaea HOM05D006721 ORTHO05D000476 1.3e-18 96.7 88 59.1
MELO3C004419.2 Cucumis melo HOM05D006721 ORTHO05D000476 8.6e-18 94.0 94 54.3
FAN09G4219 Fragaria x ananassa HOM05D006721 ORTHO05D000476 1.8e-15 86.3 85 56.5
ClCG02G016980 Citrullus lanatus HOM05D006721 ORTHO05D000476 8.9e-15 84.0 122 43.4
A09p24350 Brassica napus HOM05D006721 ORTHO05D000476 2.0e-14 82.8 58 72.4
C07p11900 Brassica napus HOM05D006721 ORTHO05D000476 2.0e-14 82.8 76 67.1
CBR_g51472 Chara braunii HOM05D006721 ORTHO05D000476 2.6e-14 82.4 96 43.8
MCO10G233 Micromonas commoda HOM05D006721 ORTHO05D000476 4.4e-14 81.6 80 51.2
A01p30750 Brassica napus HOM05D001035 ORTHO05D000476 9.8e-14 80.5 58 70.7
BolC7t41661H Brassica oleracea HOM05D006721 ORTHO05D000476 4.9e-13 78.2 76 65.8
BcaB06g29605 Brassica carinata HOM05D001035 ORTHO05D021752 1.1e-12 77.0 58 65.5
Cre02.g105950 Chlamydomonas reinhardtii HOM05D006721 ORTHO05D000476 1.4e-12 76.6 85 49.4
Zm00001eb112450 Zea mays HOM05D006721 ORTHO05D000476 1.2e-11 73.6 48 70.8
PRCOL_00003504 Prasinoderma coloniale HOM05D006721 ORTHO05D000476 2.1e-11 72.8 66 51.5
A05p09770 Brassica napus HOM05D006721 ORTHO05D000476 1.5e-09 66.6 49 69.4
DCAR_030976 Daucus carota HOM05D006721 ORTHO05D000476 4.7e-08 61.6 64 53.1
SHI31376 Sapria himalayana HOM05D006721 ORTHO05D000476 4.0e-07 58.5 46 60.9
A09p05680 Brassica napus HOM05D006721 ORTHO05D000476 4.4e-06 55.1 28 92.9


User provided reference genes

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