Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 3.9e-61 238.0 127 100.0
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 2.6e-57 225.3 127 92.1
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 2.6e-57 225.3 127 92.1
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 2.6e-57 225.3 127 92.9
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 3.4e-57 224.9 127 93.7
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 3.4e-57 224.9 127 92.9
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 4.4e-57 224.6 127 93.7
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 4.4e-57 224.6 128 93.8
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 5.8e-57 224.2 127 92.1
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 7.6e-57 223.8 127 91.3
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.3e-56 223.0 127 92.9
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 1.7e-56 222.6 127 92.1
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.7e-56 222.6 127 92.1
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 2.2e-56 222.2 128 92.2
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 2.9e-56 221.9 127 92.9
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 3.8e-56 221.5 127 90.6
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 3.8e-56 221.5 128 93.0
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.8e-56 221.5 127 92.1
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 4.9e-56 221.1 127 90.6
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 6.4e-56 220.7 127 91.3
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 6.4e-56 220.7 127 91.3
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 6.4e-56 220.7 127 89.8
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 8.4e-56 220.3 127 91.3
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 1.1e-55 219.9 127 90.6
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 1.1e-55 219.9 127 90.6
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 1.9e-55 219.2 127 89.8
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 4.1e-55 218.0 124 91.1
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 4.1e-55 218.0 128 92.2
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 9.2e-55 216.9 127 88.2
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 9.2e-55 216.9 127 88.2
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 9.2e-55 216.9 127 89.0
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 1.2e-54 216.5 127 87.4
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.2e-54 216.5 128 90.6
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.2e-54 216.5 126 88.1
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 1.6e-54 216.1 127 87.4
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 2.1e-54 215.7 129 90.7
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 2.7e-54 215.3 126 88.9
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 3.5e-54 214.9 127 88.2
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 6.0e-54 214.2 127 86.6
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 6.0e-54 214.2 127 88.2
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 7.8e-54 213.8 123 91.1
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 1.3e-53 213.0 127 87.4
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 1.7e-53 212.6 127 87.4
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 3.9e-53 211.5 127 86.6
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 5.1e-53 211.1 127 85.8
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 5.1e-53 211.1 123 89.4
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 5.1e-53 211.1 127 86.6
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 6.6e-53 210.7 127 85.0
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 1.5e-52 209.5 125 87.2
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 1.9e-52 209.1 125 87.2
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 1.9e-52 209.1 127 86.6
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 1.9e-52 209.1 127 85.0
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 2.5e-52 208.8 129 86.0
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 3.3e-52 208.4 129 86.8
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 4.3e-52 208.0 126 85.7
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 4.3e-52 208.0 127 85.8
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 7.3e-52 207.2 129 86.0
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 9.6e-52 206.8 129 84.5
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 9.6e-52 206.8 127 85.0
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.2e-51 206.5 127 83.5
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 1.6e-51 206.1 124 85.5
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.1e-51 205.7 127 85.8
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.8e-51 205.3 127 85.0
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 2.8e-51 205.3 129 84.5
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 2.8e-51 205.3 127 85.0
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 4.7e-51 204.5 126 81.7
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 4.7e-51 204.5 129 85.3
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 6.2e-51 204.1 128 85.2
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 8.1e-51 203.8 126 84.1
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 8.1e-51 203.8 126 83.3
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 8.1e-51 203.8 127 81.9
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 1.8e-50 202.6 122 87.7
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 3.1e-50 201.8 127 80.3
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 3.1e-50 201.8 126 82.5
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 4.0e-50 201.4 129 82.9
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 5.2e-50 201.1 127 82.7
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 9.0e-50 200.3 126 82.5
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 1.2e-49 199.9 124 82.3
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 1.5e-49 199.5 124 83.1
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 3.4e-49 198.4 127 81.9
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 5.8e-49 197.6 126 81.0
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 5.8e-49 197.6 122 85.2
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 7.6e-49 197.2 127 81.1
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 8.4e-48 193.7 127 76.4
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 1.9e-47 192.6 130 79.2
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 2.4e-47 192.2 126 78.6
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 3.2e-47 191.8 131 78.6
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 9.3e-47 190.3 130 77.7
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 9.3e-47 190.3 125 78.4
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 9.3e-47 190.3 127 77.2
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 2.1e-46 189.1 131 77.9
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 2.7e-46 188.7 122 78.7
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 3.5e-46 188.3 122 78.7
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 3.5e-46 188.3 127 76.4
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 2.3e-45 185.7 125 78.4
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 2.3e-45 185.7 131 74.8
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 2.3e-45 185.7 131 74.8
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 2.3e-45 185.7 118 80.5
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 5.1e-45 184.5 118 79.7
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 8.7e-45 183.7 130 76.2
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 1.1e-44 183.3 127 75.6
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 1.1e-44 183.3 131 73.3
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 1.9e-44 182.6 118 80.5
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 7.3e-44 180.6 130 75.4
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 8.1e-43 177.2 127 75.6
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 1.1e-42 176.8 127 74.8
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 1.1e-42 176.8 129 76.7
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 4.0e-42 174.9 127 73.2
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 6.9e-42 174.1 127 72.4
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 1.2e-41 173.3 129 76.0
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 1.2e-41 173.3 129 76.0
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 9.9e-41 170.2 147 63.9
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 1.1e-39 166.8 127 68.5
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 7.1e-39 164.1 154 63.6
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 2.7e-38 162.2 127 66.9
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 1.6e-35 152.9 127 63.8
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 1.6e-35 152.9 127 65.4
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 1.5e-33 146.4 127 61.4
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 7.6e-33 144.1 90 85.6
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 3.8e-32 141.7 90 78.9
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 1.1e-31 140.2 87 86.2
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 3.2e-31 138.7 127 58.3
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 4.6e-30 134.8 87 81.6
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 8.7e-29 130.6 133 57.1
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 1.1e-26 123.6 87 73.6
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 6.7e-21 104.4 120 46.7
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 3.4e-17 92.0 61 78.7
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 8.5e-16 87.4 121 43.0
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 1.1e-15 87.0 121 42.1
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 1.9e-12 76.3 46 84.8
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 2.5e-12 75.9 40 87.5
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 4.3e-12 75.1 55 70.9
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 2.0e-09 66.2 50 70.0
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 8.5e-08 60.8 41 70.7
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.1e-07 60.5 31 87.1


User provided reference genes

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