Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 0.0e+00 1176.8 582 100.0
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 5.3e-291 1003.8 619 82.1
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 3.5e-266 921.4 617 74.7
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.5e-266 921.4 617 74.7
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 8.6e-265 916.8 617 75.4
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.1e-263 912.1 617 74.2
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 6.2e-263 910.6 617 74.1
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 9.5e-248 860.1 619 69.0
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 6.0e-242 840.9 625 67.7
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 5.1e-241 837.8 622 67.8
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 1.4e-235 819.7 620 66.3
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 2.7e-234 815.5 621 65.9
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.1e-232 810.1 617 64.7
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 3.3e-232 808.5 624 66.5
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 1.6e-231 806.2 618 65.5
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 1.6e-231 806.2 615 66.0
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 2.1e-231 805.8 620 65.5
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 1.4e-230 803.1 615 66.2
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 2.0e-229 799.3 615 64.2
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 1.7e-228 796.2 615 64.4
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 2.9e-228 795.4 622 64.5
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 2.9e-228 795.4 620 64.2
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 8.4e-228 793.9 619 63.2
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 2.4e-227 792.3 659 63.0
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 1.6e-226 789.6 632 63.3
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 2.1e-226 789.3 655 62.6
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 6.0e-226 787.7 615 63.4
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 5.1e-225 784.6 631 63.1
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 8.7e-225 783.9 600 65.8
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 1.5e-224 783.1 615 63.3
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 2.5e-224 782.3 626 64.7
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.5e-224 782.3 623 63.9
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 3.3e-224 781.9 618 63.4
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 2.8e-223 778.9 631 62.9
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 3.6e-223 778.5 631 62.4
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 4.8e-223 778.1 616 63.5
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 1.4e-222 776.5 608 65.0
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 5.3e-222 774.6 615 62.9
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 6.9e-222 774.2 615 62.8
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 3.4e-221 771.9 626 61.3
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 4.5e-221 771.5 626 61.8
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 5.5e-219 764.6 615 62.6
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 1.8e-217 759.6 616 62.8
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 5.1e-217 758.1 618 61.3
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 3.3e-216 755.4 615 61.5
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.4e-214 750.0 622 61.4
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 1.8e-214 749.6 625 60.3
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.4e-214 749.2 619 60.9
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 6.9e-214 747.7 618 60.4
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 1.5e-213 746.5 615 62.1
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 4.5e-213 745.0 618 60.8
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 1.9e-211 739.6 617 61.8
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 1.2e-210 736.9 621 60.4
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 1.6e-210 736.5 617 59.2
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 2.1e-210 736.1 621 60.2
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 2.7e-210 735.7 615 60.3
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 3.0e-209 732.3 627 60.0
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 8.7e-209 730.7 642 59.2
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 1.5e-208 729.9 680 56.6
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 1.9e-208 729.6 628 58.4
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 4.3e-208 728.4 624 59.1
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.6e-207 726.5 624 60.1
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 4.8e-207 724.9 622 60.3
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 6.3e-207 724.5 620 59.5
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 1.1e-206 723.8 622 60.0
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 1.4e-206 723.4 624 59.0
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 1.2e-205 720.3 616 59.1
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 5.9e-205 718.0 625 59.7
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 4.6e-202 708.4 591 61.3
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 9.7e-200 700.7 626 57.0
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 1.6e-199 699.9 405 84.7
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 3.1e-198 695.7 567 61.9
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 1.7e-196 689.9 625 56.2
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 1.4e-195 686.8 619 58.0
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 4.6e-194 681.8 453 70.9
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 2.3e-193 679.5 610 56.6
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 3.7e-191 672.2 485 67.0
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 6.3e-191 671.4 615 55.1
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 8.2e-191 671.0 614 55.2
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 2.9e-188 662.5 485 65.8
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 2.9e-188 662.5 582 55.8
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 5.5e-187 658.3 485 66.0
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 3.0e-185 652.5 584 58.0
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 5.7e-184 648.3 617 56.4
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 4.8e-183 645.2 513 62.6
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.3e-180 637.1 616 54.2
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 8.5e-180 634.4 594 56.9
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 1.0e-177 627.5 617 54.5
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 3.3e-176 622.5 606 54.0
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 9.4e-171 604.4 620 53.5
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 6.8e-169 598.2 393 73.0
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 6.8e-169 598.2 624 49.7
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.3e-164 583.9 640 52.2
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 4.4e-160 568.9 387 69.8
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 1.3e-159 567.4 654 48.6
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 1.0e-153 547.7 523 56.4
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 8.6e-148 528.1 372 68.8
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.5e-136 490.7 623 44.9
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 1.1e-131 474.6 620 43.1
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 6.6e-124 448.7 446 52.7
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 2.8e-122 443.4 375 60.0
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 1.3e-119 434.5 497 46.1
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.7e-109 400.2 290 65.9
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 4.5e-104 382.9 477 43.4
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.6e-93 347.8 469 40.9
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.7e-93 347.1 411 44.5
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.1e-92 342.8 242 66.9
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 1.5e-91 341.3 731 32.6
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.8e-89 334.3 495 43.4
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 8.2e-82 308.9 469 39.0
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 3.9e-76 290.0 276 55.4
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 1.6e-69 268.1 227 63.9
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 5.2e-68 263.1 239 59.0
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.5e-62 244.2 188 62.2
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.4e-60 238.4 125 80.0
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 3.5e-56 223.8 307 41.4
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 1.7e-55 221.5 333 38.7
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 7.2e-54 216.1 244 44.3
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 4.5e-48 196.8 259 40.5
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 7.7e-48 196.1 125 70.4
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 9.8e-43 179.1 125 67.2
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.7e-42 178.3 190 53.2
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 3.2e-33 147.5 111 66.7
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 7.0e-33 146.4 114 54.4
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 3.6e-29 134.0 168 45.8
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 1.3e-26 125.6 131 47.3
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 2.0e-19 101.7 85 56.5
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 4.9e-18 97.1 66 60.6
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 5.6e-14 83.6 78 55.1
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 7.3e-14 83.2 61 54.1
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 5.2e-12 77.0 78 48.7
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 2.0e-11 75.1 76 50.0
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 4.2e-09 67.4 43 62.8
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 4.2e-09 67.4 239 27.6
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 1.6e-08 65.5 44 63.6
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 2.1e-08 65.1 39 66.7
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 4.6e-08 63.9 44 63.6
arahy.Tifrunner.gnm1.ann1.1SX7LU Arachis hypogaea HOM05D005479 ORTHO05D019704 5.1e-07 60.5 84 42.9
VMungo0331G0048 Vigna mungo HOM05D000010 ORTHO05D435787 5.6e-06 57.0 47 55.3


User provided reference genes

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